RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 KRT40Q6A162 431 aa12.47□□□□□ -0.41
CPSF1-203ENST00000527916 FAM133AQ8N9E0 248 aa12.47□□□□□ -0.41
CPSF1-203ENST00000527916 MKL1Q969V6 931 aa12.47□□□□□ -0.41
CPSF1-203ENST00000527916 SEC62Q99442 399 aaKnown RBP12.47□□□□□ -0.41
CPSF1-203ENST00000527916 CLIP2Q9UDT6 1046 aa12.47□□□□□ -0.41
CPSF1-203ENST00000527916 TNKSO95271 1327 aa12.46□□□□□ -0.41
CPSF1-203ENST00000527916 IGKV6D-41A0A0C4DH26 115 aa12.46□□□□□ -0.41
CPSF1-203ENST00000527916 EPOPA6NHQ4 379 aa12.46□□□□□ -0.41
CPSF1-203ENST00000527916 SLC3A2P08195 630 aaKnown RBP12.46□□□□□ -0.41
CPSF1-203ENST00000527916 CYP2C9P11712 490 aa12.46□□□□□ -0.41
CPSF1-203ENST00000527916 SMPD1P17405 629 aa12.46□□□□□ -0.41
CPSF1-203ENST00000527916 PDE4BQ07343 736 aa12.46□□□□□ -0.41
CPSF1-203ENST00000527916 GRB10Q13322 594 aa12.46□□□□□ -0.41
CPSF1-203ENST00000527916 HERC6Q8IVU3 1022 aa12.46□□□□□ -0.41
CPSF1-203ENST00000527916 RETREG2Q8NC44 543 aa12.46□□□□□ -0.41
CPSF1-203ENST00000527916 KHSRPQ92945 711 aaKnown RBP eCLIP12.46□□□□□ -0.41
CPSF1-203ENST00000527916 VWCEQ96DN2 955 aa12.46□□□□□ -0.41
CPSF1-203ENST00000527916 FTOQ9C0B1 505 aaKnown RBP eCLIP12.46□□□□□ -0.41
CPSF1-203ENST00000527916 GPHNQ9NQX3 736 aaPredicted RBP12.46□□□□□ -0.41
CPSF1-203ENST00000527916 HELLSQ9NRZ9 838 aa12.46□□□□□ -0.41
CPSF1-203ENST00000527916 TRMT13Q9NUP7 481 aaKnown RBP12.46□□□□□ -0.41
CPSF1-203ENST00000527916 POLR3EQ9NVU0 708 aa12.46□□□□□ -0.41
CPSF1-203ENST00000527916 LMCD1Q9NZU5 365 aa12.46□□□□□ -0.41
CPSF1-203ENST00000527916 ALADP13716 330 aa12.45□□□□□ -0.42
CPSF1-203ENST00000527916 CSPP1Q1MSJ5 1256 aa12.45□□□□□ -0.42
CPSF1-203ENST00000527916 TKFCQ3LXA3 575 aa12.45□□□□□ -0.42
CPSF1-203ENST00000527916 NEDD1Q8NHV4 660 aa12.45□□□□□ -0.42
CPSF1-203ENST00000527916 UIMC1Q96RL1 719 aa12.45□□□□□ -0.42
CPSF1-203ENST00000527916 NAPBQ9H115 298 aa12.45□□□□□ -0.42
CPSF1-203ENST00000527916 A1CFQ9NQ94 594 aaKnown RBP12.45□□□□□ -0.42
CPSF1-203ENST00000527916 RNF146Q9NTX7 359 aa12.45□□□□□ -0.42
CPSF1-203ENST00000527916 ISY1Q9ULR0 285 aaKnown RBP12.45□□□□□ -0.42
CPSF1-203ENST00000527916 SOWAHBA6NEL2 793 aa12.44□□□□□ -0.42
CPSF1-203ENST00000527916 PITPNM1O00562 1244 aa12.44□□□□□ -0.42
CPSF1-203ENST00000527916 BAIAP3O94812 1187 aa12.44□□□□□ -0.42
CPSF1-203ENST00000527916 KCNJ6P48051 423 aa12.44□□□□□ -0.42
CPSF1-203ENST00000527916 MRE11P49959 708 aa12.44□□□□□ -0.42
CPSF1-203ENST00000527916 CPT1AP50416 773 aa12.44□□□□□ -0.42
CPSF1-203ENST00000527916 PPARAQ07869 468 aa12.44□□□□□ -0.42
CPSF1-203ENST00000527916 ALX1Q15699 326 aa12.44□□□□□ -0.42
CPSF1-203ENST00000527916 BRDTQ58F21 947 aaPredicted RBP12.44□□□□□ -0.42
CPSF1-203ENST00000527916 FAM47CQ5HY64 1035 aa12.44□□□□□ -0.42
CPSF1-203ENST00000527916 PPP4R3BQ5MIZ7 849 aa12.44□□□□□ -0.42
CPSF1-203ENST00000527916 KIAA1211Q6ZU35 1233 aa12.44□□□□□ -0.42
CPSF1-203ENST00000527916 EEPD1Q7L9B9 569 aa12.44□□□□□ -0.42
CPSF1-203ENST00000527916 GJD3Q8N144 294 aa12.44□□□□□ -0.42
CPSF1-203ENST00000527916 GMCL1P1Q8NEA9 526 aa12.44□□□□□ -0.42
CPSF1-203ENST00000527916 CHURC1Q8WUH1 139 aa12.44□□□□□ -0.42
CPSF1-203ENST00000527916 OSBPL3Q9H4L5 887 aa12.44□□□□□ -0.42
CPSF1-203ENST00000527916 VTA1Q9NP79 307 aa12.44□□□□□ -0.42
CPSF1-203ENST00000527916 MTMR4Q9NYA4 1195 aa12.44□□□□□ -0.42
CPSF1-203ENST00000527916 ANAPC4Q9UJX5 808 aa12.44□□□□□ -0.42
CPSF1-203ENST00000527916 SCN5AQ14524 2016 aa12.44□□□□□ -0.42
CPSF1-203ENST00000527916 PLIN4Q96Q06 1357 aa12.43□□□□□ -0.42
CPSF1-203ENST00000527916 TRIOO75962 3097 aa12.43□□□□□ -0.42
CPSF1-203ENST00000527916 FOXP2O15409 715 aa12.43□□□□□ -0.42
CPSF1-203ENST00000527916 TTLL1O95922 423 aa12.43□□□□□ -0.42
CPSF1-203ENST00000527916 IGHDP01880 384 aa12.43□□□□□ -0.42
CPSF1-203ENST00000527916 BMP3P12645 472 aa12.43□□□□□ -0.42
CPSF1-203ENST00000527916 SSTR3P32745 418 aaPredicted RBP12.43□□□□□ -0.42
CPSF1-203ENST00000527916 STAT2P52630 851 aa12.43□□□□□ -0.42
CPSF1-203ENST00000527916 NUCB1Q02818 461 aa12.43□□□□□ -0.42
CPSF1-203ENST00000527916 IKQ13123 557 aaPredicted RBP12.43□□□□□ -0.42
CPSF1-203ENST00000527916 BFSP2Q13515 415 aa12.43□□□□□ -0.42
CPSF1-203ENST00000527916 DUSP28Q4G0W2 176 aa12.43□□□□□ -0.42
CPSF1-203ENST00000527916 MCMDC2Q4G0Z9 681 aa12.43□□□□□ -0.42
CPSF1-203ENST00000527916 TAPT1Q6NXT6 567 aa12.43□□□□□ -0.42
CPSF1-203ENST00000527916 FAM160B2Q86V87 743 aa12.43□□□□□ -0.42
CPSF1-203ENST00000527916 CHD1LQ86WJ1 897 aa12.43□□□□□ -0.42
CPSF1-203ENST00000527916 FBXO16Q8IX29 292 aaPredicted RBP12.43□□□□□ -0.42
CPSF1-203ENST00000527916 STK11IPQ8N1F8 1099 aa12.43□□□□□ -0.42
CPSF1-203ENST00000527916 CEP95Q96GE4 821 aa12.43□□□□□ -0.42
CPSF1-203ENST00000527916 TRERF1Q96PN7 1200 aa12.43□□□□□ -0.42
CPSF1-203ENST00000527916 MTG1Q9BT17 334 aaPredicted RBP12.43□□□□□ -0.42
CPSF1-203ENST00000527916 ZBED2Q9BTP6 218 aa12.43□□□□□ -0.42
CPSF1-203ENST00000527916 LNPKQ9C0E8 428 aa12.43□□□□□ -0.42
CPSF1-203ENST00000527916 KCNH6Q9H252 994 aa12.43□□□□□ -0.42
CPSF1-203ENST00000527916 CD320Q9NPF0 282 aa12.43□□□□□ -0.42
CPSF1-203ENST00000527916 PDGFCQ9NRA1 345 aa12.43□□□□□ -0.42
CPSF1-203ENST00000527916 RAD50Q92878 1312 aa12.42□□□□□ -0.42
CPSF1-203ENST00000527916 TMEM232C9JQI7 657 aa12.42□□□□□ -0.42
CPSF1-203ENST00000527916 LPXNO60711 386 aa12.42□□□□□ -0.42
CPSF1-203ENST00000527916 PRDM1O75626 825 aa12.42□□□□□ -0.42
CPSF1-203ENST00000527916 MYL3P08590 195 aa12.42□□□□□ -0.42
CPSF1-203ENST00000527916 FGRP09769 529 aa12.42□□□□□ -0.42
CPSF1-203ENST00000527916 IQCF3P0C7M6 154 aa12.42□□□□□ -0.42
CPSF1-203ENST00000527916 TSPY3P0CV98 308 aa12.42□□□□□ -0.42
CPSF1-203ENST00000527916 TSPY8P0CW00 308 aa12.42□□□□□ -0.42
CPSF1-203ENST00000527916 ALAS1P13196 640 aa12.42□□□□□ -0.42
CPSF1-203ENST00000527916 PURAQ00577 322 aaKnown RBP12.42□□□□□ -0.42
CPSF1-203ENST00000527916 TFAP4Q01664 338 aa12.42□□□□□ -0.42
CPSF1-203ENST00000527916 SLFN13Q68D06 897 aa12.42□□□□□ -0.42
CPSF1-203ENST00000527916 NFRKBQ6P4R8 1299 aa12.42□□□□□ -0.42
CPSF1-203ENST00000527916 FAM178BQ8IXR5 827 aa12.42□□□□□ -0.42
CPSF1-203ENST00000527916 EXOC6Q8TAG9 804 aa12.42□□□□□ -0.42
CPSF1-203ENST00000527916 UBE2ZQ9H832 354 aaPredicted RBP12.42□□□□□ -0.42
CPSF1-203ENST00000527916 NOD1Q9Y239 953 aa12.42□□□□□ -0.42
CPSF1-203ENST00000527916 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.42□□□□□ -0.42
CPSF1-203ENST00000527916 TET1Q8NFU7 2136 aa12.41□□□□□ -0.42
CPSF1-203ENST00000527916 ZNF536O15090 1300 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms