RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 NPHS1O60500 1241 aa7.28□□□□□ -1.24
CD44-223ENST00000526553 SEMA7AO75326 666 aa7.28□□□□□ -1.24
CD44-223ENST00000526553 ECI1P42126 302 aa7.28□□□□□ -1.24
CD44-223ENST00000526553 TMEM62Q0P6H9 643 aa7.28□□□□□ -1.24
CD44-223ENST00000526553 MAP4K2Q12851 820 aa7.28□□□□□ -1.24
CD44-223ENST00000526553 KCNAB2Q13303 367 aa7.28□□□□□ -1.24
CD44-223ENST00000526553 RASA3Q14644 834 aa7.28□□□□□ -1.24
CD44-223ENST00000526553 OLFML2BQ68BL8 750 aa7.28□□□□□ -1.24
CD44-223ENST00000526553 KREMEN2Q8NCW0 462 aa7.28□□□□□ -1.24
CD44-223ENST00000526553 MKL1Q969V6 931 aa7.28□□□□□ -1.24
CD44-223ENST00000526553 C1orf159Q96HA4 380 aa7.28□□□□□ -1.24
CD44-223ENST00000526553 AARSD1Q9BTE6 412 aaKnown RBP7.28□□□□□ -1.24
CD44-223ENST00000526553 MCOLN1Q9GZU1 580 aa7.28□□□□□ -1.24
CD44-223ENST00000526553 MYOCOSA0A1B0GUC4 107 aa7.27□□□□□ -1.25
CD44-223ENST00000526553 MEFVO15553 781 aaPredicted RBP7.27□□□□□ -1.25
CD44-223ENST00000526553 C8AP07357 584 aa7.27□□□□□ -1.25
CD44-223ENST00000526553 KCNJ6P48051 423 aa7.27□□□□□ -1.25
CD44-223ENST00000526553 CBX2Q14781 532 aaPredicted RBP7.27□□□□□ -1.25
CD44-223ENST00000526553 NR1I3Q14994 352 aa7.27□□□□□ -1.25
CD44-223ENST00000526553 SF1Q15637 639 aaKnown RBP7.27□□□□□ -1.25
CD44-223ENST00000526553 MBLAC2Q68D91 279 aa7.27□□□□□ -1.25
CD44-223ENST00000526553 SYDE1Q6ZW31 735 aaPredicted RBP7.27□□□□□ -1.25
CD44-223ENST00000526553 TMEM145Q8NBT3 493 aa7.27□□□□□ -1.25
CD44-223ENST00000526553 KCTD13Q8WZ19 329 aa7.27□□□□□ -1.25
CD44-223ENST00000526553 ARHGEF4Q9NR80 690 aa7.27□□□□□ -1.25
CD44-223ENST00000526553 TEX51A0A1B0GUA7 166 aa7.26□□□□□ -1.25
CD44-223ENST00000526553 A0A1W2PQJ5 194 aa7.26□□□□□ -1.25
CD44-223ENST00000526553 TSPAN15O95858 294 aa7.26□□□□□ -1.25
CD44-223ENST00000526553 CYBBP04839 570 aa7.26□□□□□ -1.25
CD44-223ENST00000526553 DBHP09172 617 aa7.26□□□□□ -1.25
CD44-223ENST00000526553 FGFR1P11362 822 aa7.26□□□□□ -1.25
CD44-223ENST00000526553 SDHBP21912 280 aa7.26□□□□□ -1.25
CD44-223ENST00000526553 GRIA2P42262 883 aa7.26□□□□□ -1.25
CD44-223ENST00000526553 RAB3GAP1Q15042 981 aa7.26□□□□□ -1.25
CD44-223ENST00000526553 PRSS53Q2L4Q9 553 aa7.26□□□□□ -1.25
CD44-223ENST00000526553 MTERF2Q49AM1 385 aa7.26□□□□□ -1.25
CD44-223ENST00000526553 SLC35F1Q5T1Q4 408 aa7.26□□□□□ -1.25
CD44-223ENST00000526553 BICRALQ6AI39 1079 aa7.26□□□□□ -1.25
CD44-223ENST00000526553 PAQR3Q6TCH7 311 aa7.26□□□□□ -1.25
CD44-223ENST00000526553 PPIL6Q8IXY8 311 aa7.26□□□□□ -1.25
CD44-223ENST00000526553 LZTR1Q8N653 840 aa7.26□□□□□ -1.25
CD44-223ENST00000526553 DIO2Q92813 273 aa7.26□□□□□ -1.25
CD44-223ENST00000526553 DRC1Q96MC2 740 aa7.26□□□□□ -1.25
CD44-223ENST00000526553 DEPDC7Q96QD5 511 aa7.26□□□□□ -1.25
CD44-223ENST00000526553 MTA3Q9BTC8 594 aa7.26□□□□□ -1.25
CD44-223ENST00000526553 IER2Q9BTL4 223 aa7.26□□□□□ -1.25
CD44-223ENST00000526553 KCNK12Q9HB15 430 aa7.26□□□□□ -1.25
CD44-223ENST00000526553 GOLGA2P5Q9HBQ8 144 aa7.26□□□□□ -1.25
CD44-223ENST00000526553 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.26□□□□□ -1.25
CD44-223ENST00000526553 KLHL14Q9P2G3 628 aa7.26□□□□□ -1.25
CD44-223ENST00000526553 CCDC85CA6NKD9 419 aa7.25□□□□□ -1.25
CD44-223ENST00000526553 MED14OSP0DP75 135 aa7.25□□□□□ -1.25
CD44-223ENST00000526553 GLI4P10075 376 aa7.25□□□□□ -1.25
CD44-223ENST00000526553 GLDCP23378 1020 aa7.25□□□□□ -1.25
CD44-223ENST00000526553 TACR1P25103 407 aa7.25□□□□□ -1.25
CD44-223ENST00000526553 PKN1Q16512 942 aa7.25□□□□□ -1.25
CD44-223ENST00000526553 INF2Q27J81 1249 aa7.25□□□□□ -1.25
CD44-223ENST00000526553 RPTNQ6XPR3 784 aa7.25□□□□□ -1.25
CD44-223ENST00000526553 SPATC1Q76KD6 591 aa7.25□□□□□ -1.25
CD44-223ENST00000526553 CABP7Q86V35 215 aa7.25□□□□□ -1.25
CD44-223ENST00000526553 CCDC103Q8IW40 242 aa7.25□□□□□ -1.25
CD44-223ENST00000526553 UBXN4Q92575 508 aa7.25□□□□□ -1.25
CD44-223ENST00000526553 SPATA9Q9BWV2 254 aa7.25□□□□□ -1.25
CD44-223ENST00000526553 SNTG2Q9NY99 539 aa7.25□□□□□ -1.25
CD44-223ENST00000526553 GULP1Q9UBP9 304 aa7.25□□□□□ -1.25
CD44-223ENST00000526553 TMEFF2Q9UIK5 374 aaPredicted RBP7.25□□□□□ -1.25
CD44-223ENST00000526553 RWDD3Q9Y3V2 267 aa7.25□□□□□ -1.25
CD44-223ENST00000526553 TRAV20A0A0B4J274 112 aa7.24□□□□□ -1.25
CD44-223ENST00000526553 NUDT19A8MXV4 375 aa7.24□□□□□ -1.25
CD44-223ENST00000526553 DLX3O60479 287 aa7.24□□□□□ -1.25
CD44-223ENST00000526553 PPP1R11O60927 126 aaPredicted RBP7.24□□□□□ -1.25
CD44-223ENST00000526553 KRT1P04264 644 aa7.24□□□□□ -1.25
CD44-223ENST00000526553 VIPR1P32241 457 aa7.24□□□□□ -1.25
CD44-223ENST00000526553 LTBRP36941 435 aa7.24□□□□□ -1.25
CD44-223ENST00000526553 MAPKAPK2P49137 400 aa7.24□□□□□ -1.25
CD44-223ENST00000526553 DENND5AQ6IQ26 1287 aa7.24□□□□□ -1.25
CD44-223ENST00000526553 NETO2Q8NC67 525 aa7.24□□□□□ -1.25
CD44-223ENST00000526553 PMFBP1Q8TBY8 1022 aa7.24□□□□□ -1.25
CD44-223ENST00000526553 DNAJC2Q99543 621 aaKnown RBP7.24□□□□□ -1.25
CD44-223ENST00000526553 KRTAP4-12Q9BQ66 201 aa7.24□□□□□ -1.25
CD44-223ENST00000526553 KRTAP9-2Q9BYQ4 174 aa7.24□□□□□ -1.25
CD44-223ENST00000526553 NPFFR2Q9Y5X5 522 aa7.24□□□□□ -1.25
CD44-223ENST00000526553 ARNTLO00327 626 aa7.23□□□□□ -1.25
CD44-223ENST00000526553 NFIBO00712 420 aa7.23□□□□□ -1.25
CD44-223ENST00000526553 TMEM253P0C7T8 217 aa7.23□□□□□ -1.25
CD44-223ENST00000526553 GTF2A2P52657 109 aa7.23□□□□□ -1.25
CD44-223ENST00000526553 RPL11P62913 178 aaKnown RBP7.23□□□□□ -1.25
CD44-223ENST00000526553 SRSF3P84103 164 aaKnown RBP7.23□□□□□ -1.25
CD44-223ENST00000526553 SSRP1Q08945 709 aaKnown RBP7.23□□□□□ -1.25
CD44-223ENST00000526553 IFRD2Q12894 506 aaPredicted RBP7.23□□□□□ -1.25
CD44-223ENST00000526553 PLEKHN1Q494U1 663 aaPredicted RBP7.23□□□□□ -1.25
CD44-223ENST00000526553 Q8N1Y9 231 aa7.23□□□□□ -1.25
CD44-223ENST00000526553 DPF3Q92784 378 aa7.23□□□□□ -1.25
CD44-223ENST00000526553 OSBPL2Q9H1P3 480 aa7.23□□□□□ -1.25
CD44-223ENST00000526553 FBLN5Q9UBX5 448 aa7.23□□□□□ -1.25
CD44-223ENST00000526553 TIMM13Q9Y5L4 95 aaPredicted RBP7.23□□□□□ -1.25
CD44-223ENST00000526553 FAM221BA6H8Z2 402 aa7.22□□□□□ -1.25
CD44-223ENST00000526553 ETV2O00321 342 aaPredicted RBP7.22□□□□□ -1.25
CD44-223ENST00000526553 PRODHO43272 600 aa7.22□□□□□ -1.25
CD44-223ENST00000526553 MYO1BO43795 1136 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms