RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 ATXN2LQ8WWM7 1075 aaKnown RBP7.78□□□□□ -1.16
CD44-221ENST00000526000 ARNTL2Q8WYA1 636 aa7.78□□□□□ -1.16
CD44-221ENST00000526000 VWCEQ96DN2 955 aa7.78□□□□□ -1.16
CD44-221ENST00000526000 ALDH8A1Q9H2A2 487 aaPredicted RBP7.78□□□□□ -1.16
CD44-221ENST00000526000 MTIF3Q9H2K0 278 aaKnown RBP7.78□□□□□ -1.16
CD44-221ENST00000526000 CPVLQ9H3G5 476 aa7.78□□□□□ -1.16
CD44-221ENST00000526000 GPHNQ9NQX3 736 aaPredicted RBP7.78□□□□□ -1.16
CD44-221ENST00000526000 PCDHB15Q9Y5E8 787 aa7.78□□□□□ -1.16
CD44-221ENST00000526000 TTC28Q96AY4 2481 aa7.78□□□□□ -1.16
CD44-221ENST00000526000 ROBO3Q96MS0 1386 aa7.77□□□□□ -1.17
CD44-221ENST00000526000 EPOPA6NHQ4 379 aa7.77□□□□□ -1.17
CD44-221ENST00000526000 FOXP2O15409 715 aa7.77□□□□□ -1.17
CD44-221ENST00000526000 SORBS3O60504 671 aa7.77□□□□□ -1.17
CD44-221ENST00000526000 ARHGEF15O94989 841 aa7.77□□□□□ -1.17
CD44-221ENST00000526000 CA3P07451 260 aa7.77□□□□□ -1.17
CD44-221ENST00000526000 FDX1P10109 184 aa7.77□□□□□ -1.17
CD44-221ENST00000526000 ALDH5A1P51649 535 aaPredicted RBP7.77□□□□□ -1.17
CD44-221ENST00000526000 TMEM67Q5HYA8 995 aa7.77□□□□□ -1.17
CD44-221ENST00000526000 ANKRD45Q5TZF3 282 aa7.77□□□□□ -1.17
CD44-221ENST00000526000 SYDE2Q5VT97 1194 aa7.77□□□□□ -1.17
CD44-221ENST00000526000 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.77□□□□□ -1.17
CD44-221ENST00000526000 CHST3Q7LGC8 479 aa7.77□□□□□ -1.17
CD44-221ENST00000526000 RETREG2Q8NC44 543 aa7.77□□□□□ -1.17
CD44-221ENST00000526000 PI4K2BQ8TCG2 481 aa7.77□□□□□ -1.17
CD44-221ENST00000526000 TBC1D5Q92609 795 aa7.77□□□□□ -1.17
CD44-221ENST00000526000 GMCL1Q96IK5 515 aa7.77□□□□□ -1.17
CD44-221ENST00000526000 UBA5Q9GZZ9 404 aa7.77□□□□□ -1.17
CD44-221ENST00000526000 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.77□□□□□ -1.17
CD44-221ENST00000526000 ZNF236Q9UL36 1845 aa7.77□□□□□ -1.17
CD44-221ENST00000526000 TNKSO95271 1327 aa7.77□□□□□ -1.17
CD44-221ENST00000526000 A0A0G2JMZ2 1700 aa7.76□□□□□ -1.17
CD44-221ENST00000526000 ERC2O15083 957 aa7.76□□□□□ -1.17
CD44-221ENST00000526000 ICAM1P05362 532 aa7.76□□□□□ -1.17
CD44-221ENST00000526000 GOLGA8HP0CJ92 632 aa7.76□□□□□ -1.17
CD44-221ENST00000526000 BMP1P13497 986 aa7.76□□□□□ -1.17
CD44-221ENST00000526000 NKX3-2P78367 333 aa7.76□□□□□ -1.17
CD44-221ENST00000526000 PURAQ00577 322 aaKnown RBP7.76□□□□□ -1.17
CD44-221ENST00000526000 PDE4DQ08499 809 aa7.76□□□□□ -1.17
CD44-221ENST00000526000 LRRFIP1Q32MZ4 808 aaKnown RBP7.76□□□□□ -1.17
CD44-221ENST00000526000 USH1GQ495M9 461 aa7.76□□□□□ -1.17
CD44-221ENST00000526000 DUSP28Q4G0W2 176 aa7.76□□□□□ -1.17
CD44-221ENST00000526000 SLC30A10Q6XR72 485 aa7.76□□□□□ -1.17
CD44-221ENST00000526000 SEPT14Q6ZU15 432 aa7.76□□□□□ -1.17
CD44-221ENST00000526000 TMEM47Q9BQJ4 181 aa7.76□□□□□ -1.17
CD44-221ENST00000526000 ZKSCAN3Q9BRR0 538 aa7.76□□□□□ -1.17
CD44-221ENST00000526000 MTG1Q9BT17 334 aaPredicted RBP7.76□□□□□ -1.17
CD44-221ENST00000526000 TSPYL2Q9H2G4 693 aaPredicted RBP7.76□□□□□ -1.17
CD44-221ENST00000526000 EPHX3Q9H6B9 360 aa7.76□□□□□ -1.17
CD44-221ENST00000526000 VAT1LQ9HCJ6 419 aa7.76□□□□□ -1.17
CD44-221ENST00000526000 VTA1Q9NP79 307 aa7.76□□□□□ -1.17
CD44-221ENST00000526000 POLR3EQ9NVU0 708 aa7.76□□□□□ -1.17
CD44-221ENST00000526000 NOD1Q9Y239 953 aa7.76□□□□□ -1.17
CD44-221ENST00000526000 PCDHA11Q9Y5I1 949 aa7.76□□□□□ -1.17
CD44-221ENST00000526000 MCM3APO60318 1980 aa7.76□□□□□ -1.17
CD44-221ENST00000526000 PLXNA1Q9UIW2 1896 aa7.75□□□□□ -1.17
CD44-221ENST00000526000 PLA2G6O60733 806 aa7.75□□□□□ -1.17
CD44-221ENST00000526000 FGAP02671 866 aa7.75□□□□□ -1.17
CD44-221ENST00000526000 IQCF3P0C7M6 154 aa7.75□□□□□ -1.17
CD44-221ENST00000526000 SUPT20HL2P0C7V6 817 aa7.75□□□□□ -1.17
CD44-221ENST00000526000 TXNP10599 105 aaKnown RBP7.75□□□□□ -1.17
CD44-221ENST00000526000 RPS6P62753 249 aaKnown RBP7.75□□□□□ -1.17
CD44-221ENST00000526000 FAM117BQ6P1L5 589 aa7.75□□□□□ -1.17
CD44-221ENST00000526000 RNF207Q6ZRF8 634 aa7.75□□□□□ -1.17
CD44-221ENST00000526000 DCAF4Q8WV16 495 aa7.75□□□□□ -1.17
CD44-221ENST00000526000 CLEC4DQ8WXI8 215 aa7.75□□□□□ -1.17
CD44-221ENST00000526000 ZFP91Q96JP5 570 aaPredicted RBP7.75□□□□□ -1.17
CD44-221ENST00000526000 FAM227BQ96M60 508 aa7.75□□□□□ -1.17
CD44-221ENST00000526000 RANBP17Q9H2T7 1088 aaKnown RBP7.75□□□□□ -1.17
CD44-221ENST00000526000 ADD3Q9UEY8 706 aaKnown RBP7.75□□□□□ -1.17
CD44-221ENST00000526000 ZBTB47Q9UFB7 747 aaPredicted RBP7.75□□□□□ -1.17
CD44-221ENST00000526000 MTUS1Q9ULD2 1270 aa7.75□□□□□ -1.17
CD44-221ENST00000526000 Q9Y3F1 56 aa7.75□□□□□ -1.17
CD44-221ENST00000526000 MTCH2Q9Y6C9 303 aa7.75□□□□□ -1.17
CD44-221ENST00000526000 TCF20Q9UGU0 1960 aaKnown RBP7.75□□□□□ -1.17
CD44-221ENST00000526000 LCHNA4D1U4 455 aa7.74□□□□□ -1.17
CD44-221ENST00000526000 KIF28PB7ZC32 967 aa7.74□□□□□ -1.17
CD44-221ENST00000526000 GTPBP6O43824 516 aaPredicted RBP7.74□□□□□ -1.17
CD44-221ENST00000526000 ARIH2O95376 493 aa7.74□□□□□ -1.17
CD44-221ENST00000526000 TOP1P11387 765 aaKnown RBP7.74□□□□□ -1.17
CD44-221ENST00000526000 ACTN1P12814 892 aa7.74□□□□□ -1.17
CD44-221ENST00000526000 MX1P20591 662 aa7.74□□□□□ -1.17
CD44-221ENST00000526000 CPT1AP50416 773 aa7.74□□□□□ -1.17
CD44-221ENST00000526000 TAP1Q03518 808 aa7.74□□□□□ -1.17
CD44-221ENST00000526000 NMIQ13287 307 aaPredicted RBP7.74□□□□□ -1.17
CD44-221ENST00000526000 PPP2R5BQ15173 497 aa7.74□□□□□ -1.17
CD44-221ENST00000526000 LY6KQ17RY6 165 aa7.74□□□□□ -1.17
CD44-221ENST00000526000 MORC4Q8TE76 937 aa7.74□□□□□ -1.17
CD44-221ENST00000526000 AFG1LQ8WV93 481 aa7.74□□□□□ -1.17
CD44-221ENST00000526000 RILPL2Q969X0 211 aa7.74□□□□□ -1.17
CD44-221ENST00000526000 TAAR1Q96RJ0 339 aa7.74□□□□□ -1.17
CD44-221ENST00000526000 ALG1Q9BT22 464 aa7.74□□□□□ -1.17
CD44-221ENST00000526000 ZBED2Q9BTP6 218 aa7.74□□□□□ -1.17
CD44-221ENST00000526000 SYNPO2Q9UMS6 1093 aa7.74□□□□□ -1.17
CD44-221ENST00000526000 TTC41PQ6P2S7 1318 aa7.74□□□□□ -1.17
CD44-221ENST00000526000 MYH8P13535 1937 aa7.74□□□□□ -1.17
CD44-221ENST00000526000 A0A0D9SFI3 127 aa7.73□□□□□ -1.17
CD44-221ENST00000526000 RBM47A0AV96 593 aaKnown RBP7.73□□□□□ -1.17
CD44-221ENST00000526000 FAM86C2PA6NEL3 165 aa7.73□□□□□ -1.17
CD44-221ENST00000526000 TRIM6-TRIM34B2RNG4 842 aa7.73□□□□□ -1.17
CD44-221ENST00000526000 TLL1O43897 1013 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms