RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 IRX5P78411 483 aaPredicted RBP15.95■□□□□ 0.14
TCOF1-215ENST00000515516 SART3Q15020 963 aaKnown RBP15.95■□□□□ 0.14
TCOF1-215ENST00000515516 TAPT1Q6NXT6 567 aa15.95■□□□□ 0.14
TCOF1-215ENST00000515516 SLC30A10Q6XR72 485 aa15.95■□□□□ 0.14
TCOF1-215ENST00000515516 MCF2L2Q86YR7 1114 aa15.95■□□□□ 0.14
TCOF1-215ENST00000515516 DEFB123Q8N688 67 aa15.95■□□□□ 0.14
TCOF1-215ENST00000515516 RGS22Q8NE09 1264 aa15.95■□□□□ 0.14
TCOF1-215ENST00000515516 DNERQ8NFT8 737 aa15.95■□□□□ 0.14
TCOF1-215ENST00000515516 MAF1Q9H063 256 aa15.95■□□□□ 0.14
TCOF1-215ENST00000515516 CPVLQ9H3G5 476 aa15.95■□□□□ 0.14
TCOF1-215ENST00000515516 DDX49Q9Y6V7 483 aaKnown RBP15.95■□□□□ 0.14
TCOF1-215ENST00000515516 PTH1RQ03431 593 aa15.94■□□□□ 0.14
TCOF1-215ENST00000515516 FAAP100Q0VG06 881 aa15.94■□□□□ 0.14
TCOF1-215ENST00000515516 FBXO11Q86XK2 927 aa15.94■□□□□ 0.14
TCOF1-215ENST00000515516 WDR11Q9BZH6 1224 aa15.94■□□□□ 0.14
TCOF1-215ENST00000515516 MRPL11Q9Y3B7 192 aaKnown RBP15.94■□□□□ 0.14
TCOF1-215ENST00000515516 PLXNA1Q9UIW2 1896 aa15.94■□□□□ 0.14
TCOF1-215ENST00000515516 IFIT3O14879 490 aaKnown RBP15.93■□□□□ 0.14
TCOF1-215ENST00000515516 SGSM2O43147 1006 aa15.93■□□□□ 0.14
TCOF1-215ENST00000515516 CYP21A2P08686 494 aa15.93■□□□□ 0.14
TCOF1-215ENST00000515516 CDK7P50613 346 aa15.93■□□□□ 0.14
TCOF1-215ENST00000515516 FPGSQ05932 587 aa15.93■□□□□ 0.14
TCOF1-215ENST00000515516 SHHQ15465 462 aa15.93■□□□□ 0.14
TCOF1-215ENST00000515516 DUSP28Q4G0W2 176 aa15.93■□□□□ 0.14
TCOF1-215ENST00000515516 BRDTQ58F21 947 aaPredicted RBP15.93■□□□□ 0.14
TCOF1-215ENST00000515516 CXCL17Q6UXB2 119 aa15.93■□□□□ 0.14
TCOF1-215ENST00000515516 CYB5R4Q7L1T6 521 aa15.93■□□□□ 0.14
TCOF1-215ENST00000515516 NCOA7Q8NI08 942 aa15.93■□□□□ 0.14
TCOF1-215ENST00000515516 SEZ6LQ9BYH1 1024 aa15.93■□□□□ 0.14
TCOF1-215ENST00000515516 RANBP2P49792 3224 aaKnown RBP15.92■□□□□ 0.14
TCOF1-215ENST00000515516 KLRF2D3W0D1 207 aa15.92■□□□□ 0.14
TCOF1-215ENST00000515516 CTAGE5O15320 804 aa15.92■□□□□ 0.14
TCOF1-215ENST00000515516 TIMP1P01033 207 aa15.92■□□□□ 0.14
TCOF1-215ENST00000515516 QRICH1Q2TAL8 776 aa15.92■□□□□ 0.14
TCOF1-215ENST00000515516 OR6J1Q8NGC5 347 aa15.92■□□□□ 0.14
TCOF1-215ENST00000515516 JMJD4Q9H9V9 463 aa15.92■□□□□ 0.14
TCOF1-215ENST00000515516 GPHNQ9NQX3 736 aaPredicted RBP15.92■□□□□ 0.14
TCOF1-215ENST00000515516 RBM47A0AV96 593 aaKnown RBP15.91■□□□□ 0.14
TCOF1-215ENST00000515516 E7EWF7 191 aa15.91■□□□□ 0.14
TCOF1-215ENST00000515516 NKRFO15226 690 aaKnown RBP eCLIP15.91■□□□□ 0.14
TCOF1-215ENST00000515516 ITGB8P26012 769 aa15.91■□□□□ 0.14
TCOF1-215ENST00000515516 CPT1AP50416 773 aa15.91■□□□□ 0.14
TCOF1-215ENST00000515516 TRAF1Q13077 416 aa15.91■□□□□ 0.14
TCOF1-215ENST00000515516 ITGA7Q13683 1181 aa15.91■□□□□ 0.14
TCOF1-215ENST00000515516 WTAPQ15007 396 aa15.91■□□□□ 0.14
TCOF1-215ENST00000515516 PPP2R5BQ15173 497 aa15.91■□□□□ 0.14
TCOF1-215ENST00000515516 SEC23AQ15436 765 aa15.91■□□□□ 0.14
TCOF1-215ENST00000515516 C9orf50Q5SZB4 431 aa15.91■□□□□ 0.14
TCOF1-215ENST00000515516 NSUN6Q8TEA1 469 aaKnown RBP15.91■□□□□ 0.14
TCOF1-215ENST00000515516 SCFD2Q8WU76 684 aa15.91■□□□□ 0.14
TCOF1-215ENST00000515516 AMNQ9BXJ7 453 aa15.91■□□□□ 0.14
TCOF1-215ENST00000515516 POLR3EQ9NVU0 708 aa15.91■□□□□ 0.14
TCOF1-215ENST00000515516 TTLL4Q14679 1199 aa15.9■□□□□ 0.14
TCOF1-215ENST00000515516 TMEM67Q5HYA8 995 aa15.9■□□□□ 0.14
TCOF1-215ENST00000515516 Q7L0L9 218 aa15.9■□□□□ 0.14
TCOF1-215ENST00000515516 CATIPQ7Z7H3 387 aa15.9■□□□□ 0.14
TCOF1-215ENST00000515516 FAM126BQ8IXS8 530 aa15.9■□□□□ 0.14
TCOF1-215ENST00000515516 STAG2Q8N3U4 1231 aa15.9■□□□□ 0.14
TCOF1-215ENST00000515516 TMEM199Q8N511 208 aa15.9■□□□□ 0.14
TCOF1-215ENST00000515516 MAP4K1Q92918 833 aa15.9■□□□□ 0.14
TCOF1-215ENST00000515516 RNPC3Q96LT9 517 aaKnown RBP15.9■□□□□ 0.14
TCOF1-215ENST00000515516 TBX21Q9UL17 535 aa15.9■□□□□ 0.14
TCOF1-215ENST00000515516 SMCHD1A6NHR9 2005 aa15.89■□□□□ 0.13
TCOF1-215ENST00000515516 MYL3P08590 195 aa15.89■□□□□ 0.13
TCOF1-215ENST00000515516 TXNP10599 105 aaKnown RBP15.89■□□□□ 0.13
TCOF1-215ENST00000515516 PTGS1P23219 599 aa15.89■□□□□ 0.13
TCOF1-215ENST00000515516 EDNRBP24530 442 aa15.89■□□□□ 0.13
TCOF1-215ENST00000515516 PPIGQ13427 754 aaKnown RBP eCLIP15.89■□□□□ 0.132e-7■■□□□ 13.8
TCOF1-215ENST00000515516 TMEM63BQ5T3F8 832 aa15.89■□□□□ 0.13
TCOF1-215ENST00000515516 ARHGEF16Q5VV41 709 aa15.89■□□□□ 0.13
TCOF1-215ENST00000515516 FAM109BQ6ICB4 259 aaPredicted RBP15.89■□□□□ 0.13
TCOF1-215ENST00000515516 MFSD5Q6N075 450 aa15.89■□□□□ 0.13
TCOF1-215ENST00000515516 SYTL5Q8TDW5 730 aaPredicted RBP15.89■□□□□ 0.13
TCOF1-215ENST00000515516 TAAR1Q96RJ0 339 aa15.89■□□□□ 0.13
TCOF1-215ENST00000515516 IWS1Q96ST2 819 aa15.89■□□□□ 0.13
TCOF1-215ENST00000515516 RMDN3Q96TC7 470 aa15.89■□□□□ 0.13
TCOF1-215ENST00000515516 MAD2L2Q9UI95 211 aa15.89■□□□□ 0.13
TCOF1-215ENST00000515516 RBM8AQ9Y5S9 174 aaKnown RBP15.89■□□□□ 0.13
TCOF1-215ENST00000515516 PALM3A6NDB9 673 aaPredicted RBP15.88■□□□□ 0.13
TCOF1-215ENST00000515516 ZBTB5O15062 677 aa15.88■□□□□ 0.13
TCOF1-215ENST00000515516 KPNA6O60684 536 aa15.88■□□□□ 0.13
TCOF1-215ENST00000515516 CFBP00751 764 aa15.88■□□□□ 0.13
TCOF1-215ENST00000515516 GRM4Q14833 912 aa15.88■□□□□ 0.13
TCOF1-215ENST00000515516 STXBP2Q15833 593 aa15.88■□□□□ 0.13
TCOF1-215ENST00000515516 ZNF697Q5TEC3 545 aa15.88■□□□□ 0.13
TCOF1-215ENST00000515516 CASC1Q6TDU7 716 aa15.88■□□□□ 0.13
TCOF1-215ENST00000515516 CENPQQ7L2Z9 268 aaPredicted RBP15.88■□□□□ 0.13
TCOF1-215ENST00000515516 CHST3Q7LGC8 479 aa15.88■□□□□ 0.13
TCOF1-215ENST00000515516 HOMER1Q86YM7 354 aa15.88■□□□□ 0.13
TCOF1-215ENST00000515516 SLC43A3Q8NBI5 491 aa15.88■□□□□ 0.13
TCOF1-215ENST00000515516 TBC1D5Q92609 795 aa15.88■□□□□ 0.13
TCOF1-215ENST00000515516 MTG1Q9BT17 334 aaPredicted RBP15.88■□□□□ 0.13
TCOF1-215ENST00000515516 PPP1R12CQ9BZL4 782 aa15.88■□□□□ 0.13
TCOF1-215ENST00000515516 MTMR10Q9NXD2 777 aa15.88■□□□□ 0.13
TCOF1-215ENST00000515516 PCDHA1Q9Y5I3 950 aa15.88■□□□□ 0.13
TCOF1-215ENST00000515516 CD4P01730 458 aa15.87■□□□□ 0.13
TCOF1-215ENST00000515516 PSMC6P62333 389 aa15.87■□□□□ 0.13
TCOF1-215ENST00000515516 SMAD3P84022 425 aaKnown RBP15.87■□□□□ 0.13
TCOF1-215ENST00000515516 SEPT14Q6ZU15 432 aa15.87■□□□□ 0.13
TCOF1-215ENST00000515516 MAP3K20Q9NYL2 800 aaKnown RBP15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms