RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 RCAN1P53805 252 aa11.29□□□□□ -0.6
RNF4-221ENST00000513643 EVCP57679 992 aa11.29□□□□□ -0.6
RNF4-221ENST00000513643 GJA9P57773 515 aa11.29□□□□□ -0.6
RNF4-221ENST00000513643 FUT2Q10981 343 aa11.29□□□□□ -0.6
RNF4-221ENST00000513643 SNX17Q15036 470 aa11.29□□□□□ -0.6
RNF4-221ENST00000513643 CCDC144BQ3MJ40 725 aa11.29□□□□□ -0.6
RNF4-221ENST00000513643 C1orf53Q5VUE5 145 aa11.29□□□□□ -0.6
RNF4-221ENST00000513643 POTEDQ86YR6 584 aa11.29□□□□□ -0.6
RNF4-221ENST00000513643 SRBD1Q8N5C6 995 aaKnown RBP11.29□□□□□ -0.6
RNF4-221ENST00000513643 FANCBQ8NB91 859 aa11.29□□□□□ -0.6
RNF4-221ENST00000513643 PIGSQ96S52 555 aa11.29□□□□□ -0.6
RNF4-221ENST00000513643 LZTS2Q9BRK4 669 aa11.29□□□□□ -0.6
RNF4-221ENST00000513643 TSEN34Q9BSV6 310 aaKnown RBP11.29□□□□□ -0.6
RNF4-221ENST00000513643 LRRC2Q9BYS8 371 aa11.29□□□□□ -0.6
RNF4-221ENST00000513643 PRO3102Q9H379 93 aa11.29□□□□□ -0.6
RNF4-221ENST00000513643 FAM217BQ9NTX9 383 aaPredicted RBP11.29□□□□□ -0.6
RNF4-221ENST00000513643 ADD3Q9UEY8 706 aaKnown RBP11.29□□□□□ -0.6
RNF4-221ENST00000513643 PHF24Q9UPV7 400 aa11.29□□□□□ -0.6
RNF4-221ENST00000513643 MRPL11Q9Y3B7 192 aaKnown RBP11.29□□□□□ -0.6
RNF4-221ENST00000513643 DDX49Q9Y6V7 483 aaKnown RBP11.29□□□□□ -0.6
RNF4-221ENST00000513643 LAMA2P24043 3122 aaKnown RBP11.28□□□□□ -0.6
RNF4-221ENST00000513643 KIF5BP33176 963 aa11.28□□□□□ -0.6
RNF4-221ENST00000513643 GNAQP50148 359 aa11.28□□□□□ -0.6
RNF4-221ENST00000513643 LRRC26Q2I0M4 334 aa11.28□□□□□ -0.6
RNF4-221ENST00000513643 USH1GQ495M9 461 aa11.28□□□□□ -0.6
RNF4-221ENST00000513643 GJC2Q5T442 439 aaPredicted RBP11.28□□□□□ -0.6
RNF4-221ENST00000513643 ANO1Q5XXA6 986 aa11.28□□□□□ -0.6
RNF4-221ENST00000513643 IQSEC1Q6DN90 963 aa11.28□□□□□ -0.6
RNF4-221ENST00000513643 APOA5Q6Q788 366 aa11.28□□□□□ -0.6
RNF4-221ENST00000513643 MCF2L2Q86YR7 1114 aa11.28□□□□□ -0.6
RNF4-221ENST00000513643 MYL10Q9BUA6 226 aa11.28□□□□□ -0.6
RNF4-221ENST00000513643 VTA1Q9NP79 307 aa11.28□□□□□ -0.6
RNF4-221ENST00000513643 XPNPEP3Q9NQH7 507 aa11.28□□□□□ -0.6
RNF4-221ENST00000513643 PDGFCQ9NRA1 345 aa11.28□□□□□ -0.6
RNF4-221ENST00000513643 Q9Y3F1 56 aa11.28□□□□□ -0.6
RNF4-221ENST00000513643 PCDHA1Q9Y5I3 950 aa11.28□□□□□ -0.6
RNF4-221ENST00000513643 FRMPD3Q5JV73 1810 aa11.28□□□□□ -0.6
RNF4-221ENST00000513643 MCM3APO60318 1980 aa11.27□□□□□ -0.61
RNF4-221ENST00000513643 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.27□□□□□ -0.61
RNF4-221ENST00000513643 PTPDC1A2A3K4 754 aa11.27□□□□□ -0.61
RNF4-221ENST00000513643 CCDC69A6NI79 296 aa11.27□□□□□ -0.61
RNF4-221ENST00000513643 H0YGN5 161 aa11.27□□□□□ -0.61
RNF4-221ENST00000513643 PLEKHA8P1O95397 391 aa11.27□□□□□ -0.61
RNF4-221ENST00000513643 PGK1P00558 417 aa11.27□□□□□ -0.61
RNF4-221ENST00000513643 SMPD1P17405 629 aa11.27□□□□□ -0.61
RNF4-221ENST00000513643 CALML3P27482 149 aa11.27□□□□□ -0.61
RNF4-221ENST00000513643 TRAF1Q13077 416 aa11.27□□□□□ -0.61
RNF4-221ENST00000513643 TMEM63BQ5T3F8 832 aa11.27□□□□□ -0.61
RNF4-221ENST00000513643 TMTC3Q6ZXV5 915 aa11.27□□□□□ -0.61
RNF4-221ENST00000513643 CTCFLQ8NI51 663 aaPredicted RBP11.27□□□□□ -0.61
RNF4-221ENST00000513643 NUP133Q8WUM0 1156 aa11.27□□□□□ -0.61
RNF4-221ENST00000513643 DPF3Q92784 378 aa11.27□□□□□ -0.61
RNF4-221ENST00000513643 LENG1Q96BZ8 264 aaPredicted RBP11.27□□□□□ -0.61
RNF4-221ENST00000513643 TCEANC2Q96MN5 208 aa11.27□□□□□ -0.61
RNF4-221ENST00000513643 TAAR1Q96RJ0 339 aa11.27□□□□□ -0.61
RNF4-221ENST00000513643 IWS1Q96ST2 819 aa11.27□□□□□ -0.61
RNF4-221ENST00000513643 TM6SF1Q9BZW5 370 aa11.27□□□□□ -0.61
RNF4-221ENST00000513643 ZSWIM6Q9HCJ5 1215 aa11.27□□□□□ -0.61
RNF4-221ENST00000513643 ZHX1Q9UKY1 873 aaPredicted RBP11.27□□□□□ -0.61
RNF4-221ENST00000513643 SLC12A7Q9Y666 1083 aa11.27□□□□□ -0.61
RNF4-221ENST00000513643 SYNRGQ9UMZ2 1314 aa11.27□□□□□ -0.61
RNF4-221ENST00000513643 NID2Q14112 1375 aa11.27□□□□□ -0.61
RNF4-221ENST00000513643 TRIOBPQ9H2D6 2365 aa11.26□□□□□ -0.61
RNF4-221ENST00000513643 MYADML2A6NDP7 307 aa11.26□□□□□ -0.61
RNF4-221ENST00000513643 CPA1P15085 419 aa11.26□□□□□ -0.61
RNF4-221ENST00000513643 RXRAP19793 462 aa11.26□□□□□ -0.61
RNF4-221ENST00000513643 RPS6KB1P23443 525 aa11.26□□□□□ -0.61
RNF4-221ENST00000513643 ADCYAP1R1P41586 468 aa11.26□□□□□ -0.61
RNF4-221ENST00000513643 IRX5P78411 483 aaPredicted RBP11.26□□□□□ -0.61
RNF4-221ENST00000513643 DUSP28Q4G0W2 176 aa11.26□□□□□ -0.61
RNF4-221ENST00000513643 CCDC62Q6P9F0 684 aa11.26□□□□□ -0.61
RNF4-221ENST00000513643 SLC39A5Q6ZMH5 540 aa11.26□□□□□ -0.61
RNF4-221ENST00000513643 RNF180Q86T96 592 aa11.26□□□□□ -0.61
RNF4-221ENST00000513643 NSUN6Q8TEA1 469 aaKnown RBP11.26□□□□□ -0.61
RNF4-221ENST00000513643 JAKMIP1Q96N16 626 aaKnown RBP11.26□□□□□ -0.61
RNF4-221ENST00000513643 SENP6Q9GZR1 1112 aaPredicted RBP11.26□□□□□ -0.61
RNF4-221ENST00000513643 NR2E3Q9Y5X4 410 aa11.26□□□□□ -0.61
RNF4-221ENST00000513643 ALPK3Q96L96 1907 aa11.26□□□□□ -0.61
RNF4-221ENST00000513643 MOXD2PA6NHM9 499 aa11.25□□□□□ -0.61
RNF4-221ENST00000513643 PIK3CDO00329 1044 aa11.25□□□□□ -0.61
RNF4-221ENST00000513643 DHX16O60231 1041 aaKnown RBP11.25□□□□□ -0.61
RNF4-221ENST00000513643 EVI5O60447 810 aa11.25□□□□□ -0.61
RNF4-221ENST00000513643 RGS20O76081 388 aa11.25□□□□□ -0.61
RNF4-221ENST00000513643 TNFAIP2Q03169 654 aa11.25□□□□□ -0.61
RNF4-221ENST00000513643 PPP2R5BQ15173 497 aa11.25□□□□□ -0.61
RNF4-221ENST00000513643 NFXL1Q6ZNB6 911 aa11.25□□□□□ -0.61
RNF4-221ENST00000513643 FBXO16Q8IX29 292 aaPredicted RBP11.25□□□□□ -0.61
RNF4-221ENST00000513643 CMTR1Q8N1G2 835 aaKnown RBP11.25□□□□□ -0.61
RNF4-221ENST00000513643 SZT2Q5T011 3432 aa11.25□□□□□ -0.61
RNF4-221ENST00000513643 FRMPD4Q14CM0 1322 aa11.25□□□□□ -0.61
RNF4-221ENST00000513643 A0A1W2PQ45 241 aaPredicted RBP11.24□□□□□ -0.61
RNF4-221ENST00000513643 A0A1W2PQY0 241 aa11.24□□□□□ -0.61
RNF4-221ENST00000513643 KBTBD13C9JR72 458 aa11.24□□□□□ -0.61
RNF4-221ENST00000513643 MEIS2O14770 477 aa11.24□□□□□ -0.61
RNF4-221ENST00000513643 ZBTB43O43298 467 aa11.24□□□□□ -0.61
RNF4-221ENST00000513643 PTGS1P23219 599 aa11.24□□□□□ -0.61
RNF4-221ENST00000513643 PSMA5P28066 241 aa11.24□□□□□ -0.61
RNF4-221ENST00000513643 CDC27P30260 824 aa11.24□□□□□ -0.61
RNF4-221ENST00000513643 CDK7P50613 346 aa11.24□□□□□ -0.61
RNF4-221ENST00000513643 ACLYP53396 1101 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms