RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 TRIM68Q6AZZ1 485 aa3.9□□□□□ -1.78
USP53-205ENST00000509769 RNF207Q6ZRF8 634 aa3.9□□□□□ -1.78
USP53-205ENST00000509769 TRIM69Q86WT6 500 aa3.9□□□□□ -1.78
USP53-205ENST00000509769 RSPH1Q8WYR4 309 aa3.9□□□□□ -1.78
USP53-205ENST00000509769 MTBPQ96DY7 904 aa3.9□□□□□ -1.78
USP53-205ENST00000509769 GSDMAQ96QA5 445 aa3.9□□□□□ -1.78
USP53-205ENST00000509769 MLPHQ9BV36 600 aaPredicted RBP3.9□□□□□ -1.78
USP53-205ENST00000509769 VIPAS39Q9H9C1 493 aa3.9□□□□□ -1.78
USP53-205ENST00000509769 RNF216Q9NWF9 866 aaPredicted RBP3.9□□□□□ -1.78
USP53-205ENST00000509769 C9orf78Q9NZ63 289 aaPredicted RBP3.9□□□□□ -1.78
USP53-205ENST00000509769 KIF17Q9P2E2 1029 aa3.9□□□□□ -1.78
USP53-205ENST00000509769 LZTS1Q9Y250 596 aa3.9□□□□□ -1.78
USP53-205ENST00000509769 AMOTL2Q9Y2J4 779 aa3.9□□□□□ -1.78
USP53-205ENST00000509769 NOC2LQ9Y3T9 749 aaKnown RBP3.9□□□□□ -1.78
USP53-205ENST00000509769 FAM169AQ9Y6X4 670 aa3.9□□□□□ -1.78
USP53-205ENST00000509769 EVPLLA8MZ36 301 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 GIPC1O14908 333 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 SGSM2O43147 1006 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 KRT37O76014 449 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 ASS1P00966 412 aaKnown RBP3.9□□□□□ -1.79
USP53-205ENST00000509769 KRT10P13645 584 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 CASP14P31944 242 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 FNTAP49354 379 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 KIF11P52732 1056 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 ILF2Q12905 390 aaKnown RBP3.9□□□□□ -1.79
USP53-205ENST00000509769 GRM1Q13255 1194 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 SNX1Q13596 522 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 EZH2Q15910 746 aaKnown RBP3.9□□□□□ -1.79
USP53-205ENST00000509769 ALDH1L2Q3SY69 923 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 ATP13A5Q4VNC0 1218 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 OLFML2BQ68BL8 750 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 PRPF40BQ6NWY9 871 aaKnown RBP3.9□□□□□ -1.79
USP53-205ENST00000509769 EMBQ6PCB8 327 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 DIS3LQ8TF46 1054 aaKnown RBP3.9□□□□□ -1.79
USP53-205ENST00000509769 TEX12Q9BXU0 123 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 TBC1D2Q9BYX2 928 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 TUFT1Q9NNX1 390 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 SPG7Q9UQ90 795 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 DIS3Q9Y2L1 958 aaKnown RBP3.9□□□□□ -1.79
USP53-205ENST00000509769 MST1RQ04912 1400 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 MAGEA13PA6NCF6 341 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 MSH5O43196 834 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 THAP12O43422 761 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 PDE5AO76074 875 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 VIL1P09327 827 aaKnown RBP3.9□□□□□ -1.79
USP53-205ENST00000509769 UBTFL1P0CB47 393 aaPredicted RBP3.9□□□□□ -1.79
USP53-205ENST00000509769 GTF2E1P29083 439 aaPredicted RBP3.9□□□□□ -1.79
USP53-205ENST00000509769 ADSLP30566 484 aaPredicted RBP3.9□□□□□ -1.79
USP53-205ENST00000509769 FOSBP53539 338 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 RAB25P57735 213 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 SESN2P58004 480 aaPredicted RBP3.9□□□□□ -1.79
USP53-205ENST00000509769 GUCY1A3Q02108 690 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 NCBP1Q09161 790 aaKnown RBP3.9□□□□□ -1.79
USP53-205ENST00000509769 FKBP5Q13451 457 aaPredicted RBP3.9□□□□□ -1.79
USP53-205ENST00000509769 CASP8Q14790 479 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 KLHL12Q53G59 568 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 OLFML1Q6UWY5 402 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 SYT10Q6XYQ8 523 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 NBPF15Q8N660 670 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 PARD3BQ8TEW8 1205 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 DGCR14Q96DF8 476 aaKnown RBP3.9□□□□□ -1.79
USP53-205ENST00000509769 HIC2Q96JB3 615 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 C8orf76Q96K31 380 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 LNPKQ9C0E8 428 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 DDX28Q9NUL7 540 aaKnown RBP3.9□□□□□ -1.79
USP53-205ENST00000509769 RSL24D1Q9UHA3 163 aaKnown RBP3.9□□□□□ -1.79
USP53-205ENST00000509769 ATP6V1HQ9UI12 483 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 CHMP2BQ9UQN3 213 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 PDE9AO76083 593 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 ALOX5P09917 674 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 UBTFL6P0CB48 400 aaPredicted RBP3.9□□□□□ -1.79
USP53-205ENST00000509769 LRPAP1P30533 357 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 TTKP33981 857 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 Q4G0T1 1027 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 ZNF569Q5MCW4 686 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 TMTC3Q6ZXV5 915 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 DENND6AQ8IWF6 608 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 CCDC36Q8IYA8 594 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 AGGF1Q8N302 714 aaeCLIP3.9□□□□□ -1.79
USP53-205ENST00000509769 VPS37AQ8NEZ2 397 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 CEP70Q8NHQ1 597 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 SEPT1Q8WYJ6 367 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 SPATA17Q96L03 361 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 TRAPPC9Q96Q05 1148 aa3.9□□□□□ -1.79
USP53-205ENST00000509769 RNF41Q9H4P4 317 aaPredicted RBP3.9□□□□□ -1.79
USP53-205ENST00000509769 FBXO2Q9UK22 296 aaPredicted RBP3.9□□□□□ -1.79
USP53-205ENST00000509769 THRAP3Q9Y2W1 955 aaKnown RBP3.9□□□□□ -1.79
USP53-205ENST00000509769 A0A0B4J269 797 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 LOC102724159A0A0B4J2E5 919 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 CALUO43852 315 aaPredicted RBP3.89□□□□□ -1.79
USP53-205ENST00000509769 RGS20O76081 388 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 PGM3O95394 542 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 PSMA3P25788 255 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 LTKP29376 864 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 S100A5P33763 92 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 IRX5P78411 483 aaPredicted RBP3.89□□□□□ -1.79
USP53-205ENST00000509769 MYL5Q02045 173 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 STK4Q13043 487 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 TUBB3Q13509 450 aa3.89□□□□□ -1.79
USP53-205ENST00000509769 PWP2Q15269 919 aaKnown RBP3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms