RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 ARHGEF25Q86VW2 580 aa6.28□□□□□ -1.4
NUP54-206ENST00000508465 RETREG2Q8NC44 543 aa6.28□□□□□ -1.4
NUP54-206ENST00000508465 SP110Q9HB58 689 aa6.28□□□□□ -1.4
NUP54-206ENST00000508465 WWC3Q9ULE0 1092 aa6.28□□□□□ -1.4
NUP54-206ENST00000508465 YBX2Q9Y2T7 364 aaKnown RBP6.28□□□□□ -1.4
NUP54-206ENST00000508465 SPATA31A1Q5TZJ5 1347 aa6.27□□□□□ -1.41
NUP54-206ENST00000508465 CPSF1Q10570 1443 aaKnown RBP6.27□□□□□ -1.41
NUP54-206ENST00000508465 MYOCOSA0A1B0GUC4 107 aa6.27□□□□□ -1.41
NUP54-206ENST00000508465 SYN1P17600 705 aa6.27□□□□□ -1.41
NUP54-206ENST00000508465 DUSP4Q13115 394 aa6.27□□□□□ -1.41
NUP54-206ENST00000508465 CCDC85BQ15834 202 aaPredicted RBP6.27□□□□□ -1.41
NUP54-206ENST00000508465 DBX2Q6ZNG2 339 aa6.27□□□□□ -1.41
NUP54-206ENST00000508465 KRT27Q7Z3Y8 459 aa6.27□□□□□ -1.41
NUP54-206ENST00000508465 DNAJB8Q8NHS0 232 aa6.27□□□□□ -1.41
NUP54-206ENST00000508465 PUS7Q96PZ0 661 aaKnown RBP6.27□□□□□ -1.41
NUP54-206ENST00000508465 SETDB2Q96T68 719 aa6.27□□□□□ -1.41
NUP54-206ENST00000508465 MIR1-1HGQ9H1L0 117 aa6.27□□□□□ -1.41
NUP54-206ENST00000508465 ADAM30Q9UKF2 790 aa6.27□□□□□ -1.41
NUP54-206ENST00000508465 KCTD3Q9Y597 815 aa6.27□□□□□ -1.41
NUP54-206ENST00000508465 PCDHB5Q9Y5E4 795 aa6.27□□□□□ -1.41
NUP54-206ENST00000508465 SBNO2Q9Y2G9 1366 aa6.27□□□□□ -1.41
NUP54-206ENST00000508465 ITSN1Q15811 1721 aa6.27□□□□□ -1.41
NUP54-206ENST00000508465 MARF1Q9Y4F3 1742 aaKnown RBP6.27□□□□□ -1.41
NUP54-206ENST00000508465 CDK12Q9NYV4 1490 aaPredicted RBP6.27□□□□□ -1.41
NUP54-206ENST00000508465 TOPAZ1Q8N9V7 1692 aa6.26□□□□□ -1.41
NUP54-206ENST00000508465 TTC21AQ8NDW8 1320 aa6.26□□□□□ -1.41
NUP54-206ENST00000508465 SEPT6Q14141 434 aa6.26□□□□□ -1.41
NUP54-206ENST00000508465 TOM1L2Q6ZVM7 507 aa6.26□□□□□ -1.41
NUP54-206ENST00000508465 DEFB132Q7Z7B7 95 aa6.26□□□□□ -1.41
NUP54-206ENST00000508465 MARCH10Q8NA82 808 aaPredicted RBP6.26□□□□□ -1.41
NUP54-206ENST00000508465 DTWD2Q8NBA8 298 aa6.26□□□□□ -1.41
NUP54-206ENST00000508465 KCNH5Q8NCM2 988 aa6.26□□□□□ -1.41
NUP54-206ENST00000508465 LTV1Q96GA3 475 aaPredicted RBP6.26□□□□□ -1.41
NUP54-206ENST00000508465 GPR160Q9UJ42 338 aa6.26□□□□□ -1.41
NUP54-206ENST00000508465 A0A1W2PP64 1363 aa6.26□□□□□ -1.41
NUP54-206ENST00000508465 BRD4O60885 1362 aaPredicted RBP6.26□□□□□ -1.41
NUP54-206ENST00000508465 SRCAPQ6ZRS2 3230 aa6.26□□□□□ -1.41
NUP54-206ENST00000508465 CD163L1Q9NR16 1453 aa6.26□□□□□ -1.41
NUP54-206ENST00000508465 GLI3P10071 1580 aa6.26□□□□□ -1.41
NUP54-206ENST00000508465 CAMTA1Q9Y6Y1 1673 aa6.26□□□□□ -1.41
NUP54-206ENST00000508465 FYB1O15117 783 aa6.25□□□□□ -1.41
NUP54-206ENST00000508465 EIF4BP23588 611 aaKnown RBP6.25□□□□□ -1.41
NUP54-206ENST00000508465 NFIXQ14938 502 aa6.25□□□□□ -1.41
NUP54-206ENST00000508465 TSNAXIP1Q2TAA8 658 aa6.25□□□□□ -1.41
NUP54-206ENST00000508465 TIGD5Q53EQ6 642 aa6.25□□□□□ -1.41
NUP54-206ENST00000508465 TCP11L2Q8N4U5 519 aa6.25□□□□□ -1.41
NUP54-206ENST00000508465 ANKS4BQ8N8V4 417 aa6.25□□□□□ -1.41
NUP54-206ENST00000508465 COG3Q96JB2 828 aa6.25□□□□□ -1.41
NUP54-206ENST00000508465 ASB16Q96NS5 453 aa6.25□□□□□ -1.41
NUP54-206ENST00000508465 KCNC2Q96PR1 638 aa6.25□□□□□ -1.41
NUP54-206ENST00000508465 PCDHA11Q9Y5I1 949 aa6.25□□□□□ -1.41
NUP54-206ENST00000508465 CPDO75976 1380 aa6.25□□□□□ -1.41
NUP54-206ENST00000508465 AATKQ6ZMQ8 1374 aa6.25□□□□□ -1.41
NUP54-206ENST00000508465 ABCA3Q99758 1704 aa6.25□□□□□ -1.41
NUP54-206ENST00000508465 COL14A1Q05707 1796 aaKnown RBP6.24□□□□□ -1.41
NUP54-206ENST00000508465 PLCH1Q4KWH8 1693 aa6.24□□□□□ -1.41
NUP54-206ENST00000508465 SASH1O94885 1247 aa6.24□□□□□ -1.41
NUP54-206ENST00000508465 ERICH6BQ5W0A0 696 aa6.24□□□□□ -1.41
NUP54-206ENST00000508465 AGMOQ6ZNB7 445 aa6.24□□□□□ -1.41
NUP54-206ENST00000508465 ACSF2Q96CM8 615 aaPredicted RBP6.24□□□□□ -1.41
NUP54-206ENST00000508465 SGPP1Q9BX95 441 aa6.24□□□□□ -1.41
NUP54-206ENST00000508465 EDC4Q6P2E9 1401 aaKnown RBP6.24□□□□□ -1.41
NUP54-206ENST00000508465 PIK3C2AO00443 1686 aa6.23□□□□□ -1.41
NUP54-206ENST00000508465 USP31Q70CQ4 1352 aa6.23□□□□□ -1.41
NUP54-206ENST00000508465 A0A0G2JLL6 359 aaPredicted RBP6.23□□□□□ -1.41
NUP54-206ENST00000508465 OR14I1A6ND48 311 aa6.23□□□□□ -1.41
NUP54-206ENST00000508465 RBAK-RBAKDNI3L0D1 243 aa6.23□□□□□ -1.41
NUP54-206ENST00000508465 TNNT2P45379 298 aaPredicted RBP6.23□□□□□ -1.41
NUP54-206ENST00000508465 AMPHP49418 695 aa6.23□□□□□ -1.41
NUP54-206ENST00000508465 YARSP54577 528 aaKnown RBP6.23□□□□□ -1.41
NUP54-206ENST00000508465 RPL6Q02878 288 aaKnown RBP6.23□□□□□ -1.41
NUP54-206ENST00000508465 CNGB1Q14028 1251 aaPredicted RBP6.23□□□□□ -1.41
NUP54-206ENST00000508465 RRS1Q15050 365 aaKnown RBP6.23□□□□□ -1.41
NUP54-206ENST00000508465 PPP1R13LQ8WUF5 828 aa6.23□□□□□ -1.41
NUP54-206ENST00000508465 CYB5D2Q8WUJ1 264 aa6.23□□□□□ -1.41
NUP54-206ENST00000508465 PANK3Q9H999 370 aa6.23□□□□□ -1.41
NUP54-206ENST00000508465 GCM1Q9NP62 436 aa6.23□□□□□ -1.41
NUP54-206ENST00000508465 JAG2Q9Y219 1238 aa6.23□□□□□ -1.41
NUP54-206ENST00000508465 BRWD3Q6RI45 1802 aa6.22□□□□□ -1.41
NUP54-206ENST00000508465 NWD2Q9ULI1 1742 aa6.22□□□□□ -1.41
NUP54-206ENST00000508465 CRYBG1Q9Y4K1 1723 aa6.22□□□□□ -1.41
NUP54-206ENST00000508465 PHRF1Q9P1Y6 1649 aaKnown RBP6.22□□□□□ -1.41
NUP54-206ENST00000508465 PPM1GO15355 546 aaPredicted RBP6.22□□□□□ -1.41
NUP54-206ENST00000508465 BRD1O95696 1058 aa6.22□□□□□ -1.41
NUP54-206ENST00000508465 LDHBP07195 334 aaKnown RBP6.22□□□□□ -1.41
NUP54-206ENST00000508465 RLBP1P12271 317 aa6.22□□□□□ -1.41
NUP54-206ENST00000508465 LIG3P49916 1009 aa6.22□□□□□ -1.41
NUP54-206ENST00000508465 CLEC16AQ2KHT3 1053 aa6.22□□□□□ -1.41
NUP54-206ENST00000508465 PTF1AQ7RTS3 328 aa6.22□□□□□ -1.41
NUP54-206ENST00000508465 FAM13CQ8NE31 585 aa6.22□□□□□ -1.41
NUP54-206ENST00000508465 RNF141Q8WVD5 230 aa6.22□□□□□ -1.41
NUP54-206ENST00000508465 IP6K1Q92551 441 aa6.22□□□□□ -1.41
NUP54-206ENST00000508465 SIRT5Q9NXA8 310 aa6.22□□□□□ -1.41
NUP54-206ENST00000508465 IRAK3Q9Y616 596 aa6.22□□□□□ -1.41
NUP54-206ENST00000508465 ADAMTS20P59510 1910 aa6.22□□□□□ -1.41
NUP54-206ENST00000508465 NRKQ7Z2Y5 1582 aa6.22□□□□□ -1.41
NUP54-206ENST00000508465 MAP3K19Q56UN5 1328 aa6.22□□□□□ -1.41
NUP54-206ENST00000508465 WDR17Q8IZU2 1322 aa6.22□□□□□ -1.41
NUP54-206ENST00000508465 COL5A2P05997 1499 aaPredicted RBP6.22□□□□□ -1.41
NUP54-206ENST00000508465 AKAP12Q02952 1782 aa6.21□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms