RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 GPIHBP1Q8IV16 184 aa9.43□□□□□ -0.9
SCN1A-207ENST00000507401 LRRC47Q8N1G4 583 aaKnown RBP9.43□□□□□ -0.9
SCN1A-207ENST00000507401 KIFC2Q96AC6 838 aa9.43□□□□□ -0.9
SCN1A-207ENST00000507401 DDX11Q96FC9 970 aa9.43□□□□□ -0.9
SCN1A-207ENST00000507401 PRO3102Q9H379 93 aa9.43□□□□□ -0.9
SCN1A-207ENST00000507401 RNF41Q9H4P4 317 aaPredicted RBP9.43□□□□□ -0.9
SCN1A-207ENST00000507401 INCENPQ9NQS7 918 aa9.43□□□□□ -0.9
SCN1A-207ENST00000507401 RIPK3Q9Y572 518 aa9.43□□□□□ -0.9
SCN1A-207ENST00000507401 PFASO15067 1338 aa9.42□□□□□ -0.9
SCN1A-207ENST00000507401 ZNF213O14771 459 aa9.42□□□□□ -0.9
SCN1A-207ENST00000507401 PGK2P07205 417 aa9.42□□□□□ -0.9
SCN1A-207ENST00000507401 TOP1P11387 765 aaKnown RBP9.42□□□□□ -0.9
SCN1A-207ENST00000507401 MCCP23508 829 aa9.42□□□□□ -0.9
SCN1A-207ENST00000507401 BMP8BP34820 402 aa9.42□□□□□ -0.9
SCN1A-207ENST00000507401 TKFCQ3LXA3 575 aa9.42□□□□□ -0.9
SCN1A-207ENST00000507401 AKNAD1Q5T1N1 836 aa9.42□□□□□ -0.9
SCN1A-207ENST00000507401 ZNF589Q86UQ0 364 aaPredicted RBP9.42□□□□□ -0.9
SCN1A-207ENST00000507401 CPXCR1Q8N123 301 aa9.42□□□□□ -0.9
SCN1A-207ENST00000507401 DCAF4Q8WV16 495 aa9.42□□□□□ -0.9
SCN1A-207ENST00000507401 ZMYND15Q9H091 742 aa9.42□□□□□ -0.9
SCN1A-207ENST00000507401 PDCL3Q9H2J4 239 aa9.42□□□□□ -0.9
SCN1A-207ENST00000507401 TACC3Q9Y6A5 838 aa9.42□□□□□ -0.9
SCN1A-207ENST00000507401 SYNGAP1Q96PV0 1343 aa9.41□□□□□ -0.9
SCN1A-207ENST00000507401 NMT2O60551 498 aa9.41□□□□□ -0.9
SCN1A-207ENST00000507401 NCLP19338 710 aaKnown RBP9.41□□□□□ -0.9
SCN1A-207ENST00000507401 CCDC178Q5BJE1 867 aa9.41□□□□□ -0.9
SCN1A-207ENST00000507401 PRAMEF19Q5SWL8 479 aa9.41□□□□□ -0.9
SCN1A-207ENST00000507401 CWC27Q6UX04 472 aaKnown RBP9.41□□□□□ -0.9
SCN1A-207ENST00000507401 BTNL9Q6UXG8 535 aa9.41□□□□□ -0.9
SCN1A-207ENST00000507401 DGKHQ86XP1 1220 aa9.41□□□□□ -0.9
SCN1A-207ENST00000507401 ANKRD35Q8N283 1001 aa9.41□□□□□ -0.9
SCN1A-207ENST00000507401 ESR2Q92731 530 aa9.41□□□□□ -0.9
SCN1A-207ENST00000507401 TMEM47Q9BQJ4 181 aa9.41□□□□□ -0.9
SCN1A-207ENST00000507401 DSCC1Q9BVC3 393 aa9.41□□□□□ -0.9
SCN1A-207ENST00000507401 SENP6Q9GZR1 1112 aaPredicted RBP9.41□□□□□ -0.9
SCN1A-207ENST00000507401 RAVER2Q9HCJ3 691 aaKnown RBP9.41□□□□□ -0.9
SCN1A-207ENST00000507401 DIAPH3Q9NSV4 1193 aa9.41□□□□□ -0.9
SCN1A-207ENST00000507401 CTNNA3Q9UI47 895 aa9.41□□□□□ -0.9
SCN1A-207ENST00000507401 PNMA2Q9UL42 364 aa9.41□□□□□ -0.9
SCN1A-207ENST00000507401 CNPY2Q9Y2B0 182 aa9.41□□□□□ -0.9
SCN1A-207ENST00000507401 PLXNA1Q9UIW2 1896 aa9.4□□□□□ -0.9
SCN1A-207ENST00000507401 ZNF536O15090 1300 aa9.4□□□□□ -0.9
SCN1A-207ENST00000507401 SMCHD1A6NHR9 2005 aa9.4□□□□□ -0.9
SCN1A-207ENST00000507401 GOLGA6L3A6NEY3 463 aa9.4□□□□□ -0.9
SCN1A-207ENST00000507401 ZNF865P0CJ78 1059 aaPredicted RBP9.4□□□□□ -0.9
SCN1A-207ENST00000507401 RARBP10826 455 aa9.4□□□□□ -0.9
SCN1A-207ENST00000507401 MRE11P49959 708 aa9.4□□□□□ -0.9
SCN1A-207ENST00000507401 FXR1P51114 621 aaKnown RBP eCLIP9.4□□□□□ -0.9
SCN1A-207ENST00000507401 RRP12Q5JTH9 1297 aaKnown RBP9.4□□□□□ -0.9
SCN1A-207ENST00000507401 C1orf53Q5VUE5 145 aa9.4□□□□□ -0.9
SCN1A-207ENST00000507401 C7orf61Q8IZ16 206 aa9.4□□□□□ -0.9
SCN1A-207ENST00000507401 ANKS1AQ92625 1134 aa9.4□□□□□ -0.9
SCN1A-207ENST00000507401 GDF15Q99988 308 aa9.4□□□□□ -0.9
SCN1A-207ENST00000507401 ABHD16BQ9H3Z7 469 aa9.4□□□□□ -0.9
SCN1A-207ENST00000507401 ACAD9Q9H845 621 aa9.4□□□□□ -0.9
SCN1A-207ENST00000507401 TOMM22Q9NS69 142 aa9.4□□□□□ -0.9
SCN1A-207ENST00000507401 PRR12Q9ULL5 1215 aa9.4□□□□□ -0.9
SCN1A-207ENST00000507401 ALPK3Q96L96 1907 aa9.4□□□□□ -0.9
SCN1A-207ENST00000507401 KBTBD13C9JR72 458 aa9.39□□□□□ -0.91
SCN1A-207ENST00000507401 SNAI1O95863 264 aaPredicted RBP9.39□□□□□ -0.91
SCN1A-207ENST00000507401 AKR1A1P14550 325 aa9.39□□□□□ -0.91
SCN1A-207ENST00000507401 SLC4A3P48751 1232 aa9.39□□□□□ -0.91
SCN1A-207ENST00000507401 COPS2P61201 443 aa9.39□□□□□ -0.91
SCN1A-207ENST00000507401 HAND2P61296 217 aa9.39□□□□□ -0.91
SCN1A-207ENST00000507401 IKQ13123 557 aaPredicted RBP9.39□□□□□ -0.91
SCN1A-207ENST00000507401 IMMTQ16891 758 aaKnown RBP9.39□□□□□ -0.91
SCN1A-207ENST00000507401 LRRC26Q2I0M4 334 aa9.39□□□□□ -0.91
SCN1A-207ENST00000507401 GJC2Q5T442 439 aaPredicted RBP9.39□□□□□ -0.91
SCN1A-207ENST00000507401 SLC39A5Q6ZMH5 540 aa9.39□□□□□ -0.91
SCN1A-207ENST00000507401 KCTD1Q719H9 257 aa9.39□□□□□ -0.91
SCN1A-207ENST00000507401 RNF180Q86T96 592 aa9.39□□□□□ -0.91
SCN1A-207ENST00000507401 FAM133AQ8N9E0 248 aa9.39□□□□□ -0.91
SCN1A-207ENST00000507401 AGBL1Q96MI9 1066 aa9.39□□□□□ -0.91
SCN1A-207ENST00000507401 TRERF1Q96PN7 1200 aa9.39□□□□□ -0.91
SCN1A-207ENST00000507401 UPF2Q9HAU5 1272 aaKnown RBP9.39□□□□□ -0.91
SCN1A-207ENST00000507401 XPNPEP3Q9NQH7 507 aa9.39□□□□□ -0.91
SCN1A-207ENST00000507401 FAM184BQ9ULE4 1060 aa9.39□□□□□ -0.91
SCN1A-207ENST00000507401 FRMPD3Q5JV73 1810 aa9.39□□□□□ -0.91
SCN1A-207ENST00000507401 RANBP2P49792 3224 aaKnown RBP9.39□□□□□ -0.91
SCN1A-207ENST00000507401 TRIOBPQ9H2D6 2365 aa9.38□□□□□ -0.91
SCN1A-207ENST00000507401 LOC102724159A0A0B4J2E5 919 aa9.38□□□□□ -0.91
SCN1A-207ENST00000507401 ASB14A6NK59 587 aa9.38□□□□□ -0.91
SCN1A-207ENST00000507401 ACTN4O43707 911 aaKnown RBP9.38□□□□□ -0.91
SCN1A-207ENST00000507401 ICAM1P05362 532 aa9.38□□□□□ -0.91
SCN1A-207ENST00000507401 SNHG28P0DPA3 235 aa9.38□□□□□ -0.91
SCN1A-207ENST00000507401 TAL1P17542 331 aaPredicted RBP9.38□□□□□ -0.91
SCN1A-207ENST00000507401 ACVR2BQ13705 512 aa9.38□□□□□ -0.91
SCN1A-207ENST00000507401 SNX17Q15036 470 aa9.38□□□□□ -0.91
SCN1A-207ENST00000507401 PWP2Q15269 919 aaKnown RBP9.38□□□□□ -0.91
SCN1A-207ENST00000507401 LRRC41Q15345 812 aa9.38□□□□□ -0.91
SCN1A-207ENST00000507401 TTC22Q5TAA0 569 aa9.38□□□□□ -0.91
SCN1A-207ENST00000507401 IQCA1Q86XH1 822 aa9.38□□□□□ -0.91
SCN1A-207ENST00000507401 NLRP7Q8WX94 980 aa9.38□□□□□ -0.91
SCN1A-207ENST00000507401 RUFY2Q8WXA3 655 aa9.38□□□□□ -0.91
SCN1A-207ENST00000507401 TSEN34Q9BSV6 310 aaKnown RBP9.38□□□□□ -0.91
SCN1A-207ENST00000507401 KRT23Q9C075 422 aa9.38□□□□□ -0.91
SCN1A-207ENST00000507401 MAF1Q9H063 256 aa9.38□□□□□ -0.91
SCN1A-207ENST00000507401 RANBP17Q9H2T7 1088 aaKnown RBP9.38□□□□□ -0.91
SCN1A-207ENST00000507401 CNNM2Q9H8M5 875 aa9.38□□□□□ -0.91
SCN1A-207ENST00000507401 RNF146Q9NTX7 359 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 520.5 ms