RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 RLFQ13129 1914 aa9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 STXBP3O00186 592 aa9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 PGK2P07205 417 aa9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 GJB2P29033 226 aa9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 CTGFP29279 349 aa9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 GNA11P29992 359 aa9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 ANP32AP39687 249 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 FLT3LGP49771 235 aa9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 ADCY7P51828 1080 aa9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 MRPL12P52815 198 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 PRKCZQ05513 592 aa9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 ST3GAL1Q11201 340 aa9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 MAP2K5Q13163 448 aa9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 BAATQ14032 418 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 GRB14Q14449 540 aa9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 PPP1R18Q6NYC8 613 aa9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 FCHSD1Q86WN1 690 aa9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 ABRAQ8N0Z2 381 aa9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 SAMD3Q8N6K7 520 aa9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 SPRYD3Q8NCJ5 442 aa9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 CLEC4DQ8WXI8 215 aa9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 MPHOSPH6Q99547 160 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 GLT8D2Q9H1C3 349 aa9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 A1CFQ9NQ94 594 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 SH3GLB2Q9NR46 395 aa9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 CYP39A1Q9NYL5 469 aa9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 SRRDQ9UH36 339 aa9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 GABRQQ9UN88 632 aa9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 STK36Q9NRP7 1315 aa9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 PARP14Q460N5 1801 aa9.44□□□□□ -0.9
LIMCH1-206ENST00000505705 A0A0G2JMZ2 1700 aa9.43□□□□□ -0.9
LIMCH1-206ENST00000505705 B4DLN1 442 aa9.43□□□□□ -0.9
LIMCH1-206ENST00000505705 FDPSP14324 419 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-206ENST00000505705 HOXA13P31271 388 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-206ENST00000505705 PRMT2P55345 433 aa9.43□□□□□ -0.9
LIMCH1-206ENST00000505705 RPS6P62753 249 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-206ENST00000505705 GNL2Q13823 731 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-206ENST00000505705 MORN1Q5T089 497 aa9.43□□□□□ -0.9
LIMCH1-206ENST00000505705 ARHGEF16Q5VV41 709 aa9.43□□□□□ -0.9
LIMCH1-206ENST00000505705 SLC30A10Q6XR72 485 aa9.43□□□□□ -0.9
LIMCH1-206ENST00000505705 OTOP1Q7RTM1 612 aa9.43□□□□□ -0.9
LIMCH1-206ENST00000505705 CTU1Q7Z7A3 348 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-206ENST00000505705 RGS22Q8NE09 1264 aa9.43□□□□□ -0.9
LIMCH1-206ENST00000505705 BICD2Q8TD16 824 aa9.43□□□□□ -0.9
LIMCH1-206ENST00000505705 TBC1D5Q92609 795 aa9.43□□□□□ -0.9
LIMCH1-206ENST00000505705 C8orf76Q96K31 380 aa9.43□□□□□ -0.9
LIMCH1-206ENST00000505705 AIFM3Q96NN9 605 aa9.43□□□□□ -0.9
LIMCH1-206ENST00000505705 EHMT1Q9H9B1 1298 aa9.43□□□□□ -0.9
LIMCH1-206ENST00000505705 BRMS1Q9HCU9 246 aa9.43□□□□□ -0.9
LIMCH1-206ENST00000505705 MAP3K20Q9NYL2 800 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-206ENST00000505705 BIN2Q9UBW5 565 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-206ENST00000505705 BAZ2BQ9UIF8 2168 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-206ENST00000505705 SPDYE3A6NKU9 549 aa9.42□□□□□ -0.9
LIMCH1-206ENST00000505705 H3BQV1 296 aa9.42□□□□□ -0.9
LIMCH1-206ENST00000505705 COBLO75128 1261 aa9.42□□□□□ -0.9
LIMCH1-206ENST00000505705 CNTN2Q02246 1040 aa9.42□□□□□ -0.9
LIMCH1-206ENST00000505705 CUL4AQ13619 759 aa9.42□□□□□ -0.9
LIMCH1-206ENST00000505705 SAFBQ15424 915 aaKnown RBP eCLIP9.42□□□□□ -0.9
LIMCH1-206ENST00000505705 UBE2SQ16763 222 aa9.42□□□□□ -0.9
LIMCH1-206ENST00000505705 IFFO2Q5TF58 517 aa9.42□□□□□ -0.9
LIMCH1-206ENST00000505705 USP17L6PQ6QN14 398 aa9.42□□□□□ -0.9
LIMCH1-206ENST00000505705 INTS4Q96HW7 963 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-206ENST00000505705 APBA2Q99767 749 aa9.42□□□□□ -0.9
LIMCH1-206ENST00000505705 MAF1Q9H063 256 aa9.42□□□□□ -0.9
LIMCH1-206ENST00000505705 RIC8AQ9NPQ8 531 aa9.42□□□□□ -0.9
LIMCH1-206ENST00000505705 PRDM10Q9NQV6 1147 aa9.42□□□□□ -0.9
LIMCH1-206ENST00000505705 ADD3Q9UEY8 706 aaKnown RBP9.42□□□□□ -0.9
LIMCH1-206ENST00000505705 GJD2Q9UKL4 321 aa9.42□□□□□ -0.9
LIMCH1-206ENST00000505705 KCNJ14Q9UNX9 436 aa9.42□□□□□ -0.9
LIMCH1-206ENST00000505705 MYH6P13533 1939 aa9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 C19orf67A6NJJ6 358 aa9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 ASB14A6NK59 587 aa9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 ADCY3O60266 1144 aa9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 HSD17B4P51659 736 aa9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 CAP1Q01518 475 aa9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 GUCY1B3Q02153 619 aa9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 PKN2Q16513 984 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 JAKMIP3Q5VZ66 844 aa9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 LARP1BQ659C4 914 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 KRT40Q6A162 431 aa9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 GALNT17Q6IS24 598 aa9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 TYW1BQ6NUM6 668 aa9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 TRMT44Q8IYL2 757 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 BLIDQ8IZY5 108 aa9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 DNERQ8NFT8 737 aa9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 NPLOC4Q8TAT6 608 aa9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 SYTL5Q8TDW5 730 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 NSUN6Q8TEA1 469 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 PURBQ96QR8 312 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 TAAR1Q96RJ0 339 aa9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 RMDN3Q96TC7 470 aa9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 ZMYND12Q9H0C1 365 aa9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 PCDHA6Q9UN73 950 aa9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 PCDHA4Q9UN74 947 aa9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 DIS3Q9Y2L1 958 aaKnown RBP9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 PTPN22Q9Y2R2 807 aa9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 PCDHA8Q9Y5H6 950 aa9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 PTCH2Q9Y6C5 1203 aa9.41□□□□□ -0.9
LIMCH1-206ENST00000505705 ESYT2A0FGR8 921 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms