RNA–Protein interactions for RNA: ENST00000503060.5

USP46-204, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 5

Gene USP46, Length 2,437 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-204ENST00000503060 TMEM260Q9NX78 707 aa13.04□□□□□ -0.32
USP46-204ENST00000503060 MYH4Q9Y623 1939 aa13.04□□□□□ -0.32
USP46-204ENST00000503060 PP2D1A8MPX8 630 aa13.03□□□□□ -0.32
USP46-204ENST00000503060 CD44P16070 742 aaKnown RBP13.03□□□□□ -0.32
USP46-204ENST00000503060 UBA7P41226 1012 aa13.03□□□□□ -0.32
USP46-204ENST00000503060 CUL4BQ13620 913 aa13.03□□□□□ -0.32
USP46-204ENST00000503060 TATDN1Q6P1N9 297 aa13.03□□□□□ -0.32
USP46-204ENST00000503060 TTLL6Q8N841 843 aa13.03□□□□□ -0.32
USP46-204ENST00000503060 ARHGEF10LQ9HCE6 1279 aa13.03□□□□□ -0.32
USP46-204ENST00000503060 NYAP2Q9P242 653 aa13.03□□□□□ -0.32
USP46-204ENST00000503060 KLHL42Q9P2K6 505 aa13.03□□□□□ -0.32
USP46-204ENST00000503060 PPP1R3GB7ZBB8 358 aa13.03□□□□□ -0.32
USP46-204ENST00000503060 ENTPD3O75355 529 aa13.03□□□□□ -0.32
USP46-204ENST00000503060 EEF2P13639 858 aaKnown RBP13.03□□□□□ -0.32
USP46-204ENST00000503060 SHROOM1Q2M3G4 852 aaPredicted RBP13.03□□□□□ -0.32
USP46-204ENST00000503060 CCDC93Q567U6 631 aa13.03□□□□□ -0.32
USP46-204ENST00000503060 RRAGBQ5VZM2 374 aa13.03□□□□□ -0.32
USP46-204ENST00000503060 ARMCX5Q6P1M9 558 aa13.03□□□□□ -0.32
USP46-204ENST00000503060 KCTD1Q719H9 257 aa13.03□□□□□ -0.32
USP46-204ENST00000503060 VSTM4Q8IW00 320 aa13.03□□□□□ -0.32
USP46-204ENST00000503060 HS6ST3Q8IZP7 471 aa13.03□□□□□ -0.32
USP46-204ENST00000503060 MTMR8Q96EF0 704 aa13.03□□□□□ -0.32
USP46-204ENST00000503060 KANSL2Q9H9L4 492 aa13.03□□□□□ -0.32
USP46-204ENST00000503060 PPP1R11O60927 126 aaPredicted RBP13.02□□□□□ -0.32
USP46-204ENST00000503060 SLC16A2P36021 539 aa13.02□□□□□ -0.32
USP46-204ENST00000503060 SATB1Q01826 763 aa13.02□□□□□ -0.32
USP46-204ENST00000503060 NAALADL2Q58DX5 795 aa13.02□□□□□ -0.32
USP46-204ENST00000503060 HSP90AA4PQ58FG1 418 aa13.02□□□□□ -0.32
USP46-204ENST00000503060 SPATA1Q5VX52 437 aa13.02□□□□□ -0.32
USP46-204ENST00000503060 PRMT6Q96LA8 375 aaPredicted RBP13.02□□□□□ -0.32
USP46-204ENST00000503060 AK8Q96MA6 479 aa13.02□□□□□ -0.32
USP46-204ENST00000503060 INTS13Q9NVM9 706 aa13.02□□□□□ -0.32
USP46-204ENST00000503060 SYNRGQ9UMZ2 1314 aa13.02□□□□□ -0.32
USP46-204ENST00000503060 ATRNL1Q5VV63 1379 aa13.02□□□□□ -0.32
USP46-204ENST00000503060 USP17L10C9JJH3 530 aa13.02□□□□□ -0.33
USP46-204ENST00000503060 TMEM232C9JQI7 657 aa13.02□□□□□ -0.33
USP46-204ENST00000503060 SFPQP23246 707 aaKnown RBP eCLIP13.02□□□□□ -0.33
USP46-204ENST00000503060 KLHL10Q6JEL2 608 aa13.02□□□□□ -0.33
USP46-204ENST00000503060 SMYD4Q8IYR2 804 aaPredicted RBP13.02□□□□□ -0.33
USP46-204ENST00000503060 RTKN2Q8IZC4 609 aa13.02□□□□□ -0.33
USP46-204ENST00000503060 RASSF8Q8NHQ8 419 aa13.02□□□□□ -0.33
USP46-204ENST00000503060 DCAF4Q8WV16 495 aa13.02□□□□□ -0.33
USP46-204ENST00000503060 PMM1Q92871 262 aa13.02□□□□□ -0.33
USP46-204ENST00000503060 RIC8AQ9NPQ8 531 aa13.02□□□□□ -0.33
USP46-204ENST00000503060 SAMSN1Q9NSI8 373 aaKnown RBP13.02□□□□□ -0.33
USP46-204ENST00000503060 ZBTB5O15062 677 aa13.01□□□□□ -0.33
USP46-204ENST00000503060 SEPT2Q15019 361 aa13.01□□□□□ -0.33
USP46-204ENST00000503060 SLFN13Q68D06 897 aa13.01□□□□□ -0.33
USP46-204ENST00000503060 TMEM179Q6ZVK1 233 aa13.01□□□□□ -0.33
USP46-204ENST00000503060 PRIMPOLQ96LW4 560 aa13.01□□□□□ -0.33
USP46-204ENST00000503060 RMND1Q9NWS8 449 aa13.01□□□□□ -0.33
USP46-204ENST00000503060 COL2A1P02458 1487 aaPredicted RBP13.01□□□□□ -0.33
USP46-204ENST00000503060 UQCRHLA0A096LP55 91 aa13.01□□□□□ -0.33
USP46-204ENST00000503060 RPN1P04843 607 aaKnown RBP13.01□□□□□ -0.33
USP46-204ENST00000503060 UQCRHP07919 91 aa13.01□□□□□ -0.33
USP46-204ENST00000503060 BAG6P46379 1132 aa13.01□□□□□ -0.33
USP46-204ENST00000503060 STX17P56962 302 aa13.01□□□□□ -0.33
USP46-204ENST00000503060 ICA1Q05084 483 aa13.01□□□□□ -0.33
USP46-204ENST00000503060 ZRSR2Q15696 482 aaKnown RBP13.01□□□□□ -0.33
USP46-204ENST00000503060 RSBN1LQ6PCB5 846 aaPredicted RBP13.01□□□□□ -0.33
USP46-204ENST00000503060 CABP7Q86V35 215 aa13.01□□□□□ -0.33
USP46-204ENST00000503060 SIAH1Q8IUQ4 282 aa13.01□□□□□ -0.33
USP46-204ENST00000503060 PSME4Q14997 1843 aa13.01□□□□□ -0.33
USP46-204ENST00000503060 A6NJR5 290 aa13□□□□□ -0.33
USP46-204ENST00000503060 GDF11O95390 407 aa13□□□□□ -0.33
USP46-204ENST00000503060 TPD52L1Q16890 204 aaPredicted RBP13□□□□□ -0.33
USP46-204ENST00000503060 ABCB5Q2M3G0 1257 aa13□□□□□ -0.33
USP46-204ENST00000503060 PUS10Q3MIT2 529 aaKnown RBP13□□□□□ -0.33
USP46-204ENST00000503060 POTEDQ86YR6 584 aa13□□□□□ -0.33
USP46-204ENST00000503060 SREK1Q8WXA9 508 aaKnown RBP13□□□□□ -0.33
USP46-204ENST00000503060 CUL5Q93034 780 aa13□□□□□ -0.33
USP46-204ENST00000503060 VTI1AQ96AJ9 217 aa13□□□□□ -0.33
USP46-204ENST00000503060 EDIL3O43854 480 aa13□□□□□ -0.33
USP46-204ENST00000503060 DPEP1P16444 411 aa13□□□□□ -0.33
USP46-204ENST00000503060 SLC1A4P43007 532 aa13□□□□□ -0.33
USP46-204ENST00000503060 SF3B2Q13435 895 aaKnown RBP13□□□□□ -0.33
USP46-204ENST00000503060 ZNF658Q5TYW1 1059 aaPredicted RBP13□□□□□ -0.33
USP46-204ENST00000503060 DEFB132Q7Z7B7 95 aa13□□□□□ -0.33
USP46-204ENST00000503060 BANK1Q8NDB2 785 aa13□□□□□ -0.33
USP46-204ENST00000503060 PLIN2Q99541 437 aa13□□□□□ -0.33
USP46-204ENST00000503060 SPOCK3Q9BQ16 436 aa13□□□□□ -0.33
USP46-204ENST00000503060 CUEDC2Q9H467 287 aa13□□□□□ -0.33
USP46-204ENST00000503060 KBTBD4Q9NVX7 518 aa13□□□□□ -0.33
USP46-204ENST00000503060 KIAA1522Q9P206 1035 aaPredicted RBP13□□□□□ -0.33
USP46-204ENST00000503060 CTNND2Q9UQB3 1225 aa13□□□□□ -0.33
USP46-204ENST00000503060 MYL1P05976 194 aa12.99□□□□□ -0.33
USP46-204ENST00000503060 KCNA3P22001 575 aa12.99□□□□□ -0.33
USP46-204ENST00000503060 CLK2P49760 499 aaKnown RBP12.99□□□□□ -0.33
USP46-204ENST00000503060 MRPL12P52815 198 aaKnown RBP12.99□□□□□ -0.33
USP46-204ENST00000503060 UBE2SQ16763 222 aa12.99□□□□□ -0.33
USP46-204ENST00000503060 CDKAL1Q5VV42 579 aa12.99□□□□□ -0.33
USP46-204ENST00000503060 LARGE2Q8N3Y3 721 aa12.99□□□□□ -0.33
USP46-204ENST00000503060 LRRC15Q8TF66 581 aa12.99□□□□□ -0.33
USP46-204ENST00000503060 C16orf45Q96MC5 204 aaPredicted RBP12.99□□□□□ -0.33
USP46-204ENST00000503060 MTMR9Q96QG7 549 aa12.99□□□□□ -0.33
USP46-204ENST00000503060 MAGEF1Q9HAY2 307 aa12.99□□□□□ -0.33
USP46-204ENST00000503060 KCND1Q9NSA2 647 aa12.99□□□□□ -0.33
USP46-204ENST00000503060 PPP1R1BQ9UD71 204 aaPredicted RBP12.99□□□□□ -0.33
USP46-204ENST00000503060 SPDYE2BA6NHP3 402 aa12.99□□□□□ -0.33
USP46-204ENST00000503060 USP27XA6NNY8 438 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms