RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 GSTA5Q7RTV2 222 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 HOOK2Q96ED9 719 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 ZFP91Q96JP5 570 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 FAM84BQ96KN1 310 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 IWS1Q96ST2 819 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 PSMB7Q99436 277 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 PICK1Q9NRD5 415 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 FBXO2Q9UK22 296 aaPredicted RBP11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 PNMA6FA0A0J9YX94 578 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 SPOPO43791 374 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 APBA3O96018 575 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 PRR29P0C7W0 189 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 POLD1P28340 1107 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 CUL4BQ13620 913 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 DNAJC21Q5F1R6 531 aaKnown RBP11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 KANSL2Q9H9L4 492 aa11.88□□□□□ -0.51
LIMCH1-205ENST00000503057 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 ATP2A1O14983 1001 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 ZEB2O60315 1214 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 STAT1P42224 750 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 ZBED6P86452 979 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 SND1Q7KZF4 910 aaKnown RBP eCLIP11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 COA1Q9GZY4 146 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 A0A1W2PRG0 241 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 CDC25AP30304 524 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 MB21D1Q8N884 522 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 CEP83Q9Y592 693 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 BZW2Q9Y6E2 419 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 MST1RQ04912 1400 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 TMEM232C9JQI7 657 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 RNASE9P60153 205 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 MTMR3Q13615 1198 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 MIER3Q7Z3K6 550 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 KRT26Q7Z3Y9 468 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 MSANTD4Q8NCY6 345 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 SELENOSQ9BQE4 189 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 MROH7-TTC4A0A0A0MT08 1334 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 CAMTA2O94983 1202 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 NCBP1Q09161 790 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 CNKSR1Q969H4 720 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 MED4Q9NPJ6 270 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 N4BP1O75113 896 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 MYCLP12524 364 aaPredicted RBP11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 ATP2C1P98194 919 aaPredicted RBP11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 STRN3Q13033 797 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 KCTD1Q719H9 257 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 METTL16Q86W50 562 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 ACRBPQ8NEB7 543 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 TMEM47Q9BQJ4 181 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 CTTNBP2NLQ9P2B4 639 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 RABGAP1Q9Y3P9 1069 aa11.87□□□□□ -0.51
LIMCH1-205ENST00000503057 NEBLO76041 1014 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 NDUFA10O95299 355 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 KCNJ6P48051 423 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 LRRC63Q05C16 580 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 SF3B3Q15393 1217 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 RUFY4Q6ZNE9 571 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 CEP128Q6ZU80 1094 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 GPIHBP1Q8IV16 184 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 KLHL7Q8IXQ5 586 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 COA7Q96BR5 231 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 ZBTB9Q96C00 473 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 IL17RAQ96F46 866 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 TEKT3Q9BXF9 490 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 TMOD4Q9NZQ9 345 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 NMT2O60551 498 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 GUCY1A2P33402 732 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 FKBP3Q00688 224 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 CCDC121Q6ZUS5 278 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 CROCCP2Q86T23 111 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 NIM1KQ8IY84 436 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 HPS5Q9UPZ3 1129 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 IKBKGQ9Y6K9 419 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 GAP43P17677 238 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 PPP1R18Q6NYC8 613 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 B4GALNT4Q76KP1 1039 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 FERMT1Q9BQL6 677 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 PHF20Q9BVI0 1012 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 KCNG1Q9UIX4 513 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 AMFRQ9UKV5 643 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 PNMA2Q9UL42 364 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 ADRA2BP18089 450 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 GJC1P36383 396 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 BIRC3Q13489 604 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 LIN9Q5TKA1 542 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 FAM71BQ8TC56 605 aa11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 EPB41L4AQ9HCS5 686 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 MKRN1Q9UHC7 482 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-205ENST00000503057 TOGARAM2Q6ZUX3 1019 aa11.85□□□□□ -0.51
LIMCH1-205ENST00000503057 MAEAQ7L5Y9 396 aa11.85□□□□□ -0.51
LIMCH1-205ENST00000503057 MCF2L2Q86YR7 1114 aa11.85□□□□□ -0.51
LIMCH1-205ENST00000503057 OTUD6BQ8N6M0 293 aa11.85□□□□□ -0.51
LIMCH1-205ENST00000503057 U2AF1L4Q8WU68 220 aaKnown RBP11.85□□□□□ -0.51
LIMCH1-205ENST00000503057 NSUN4Q96CB9 384 aaKnown RBP11.85□□□□□ -0.51
LIMCH1-205ENST00000503057 NHEJ1Q9H9Q4 299 aaPredicted RBP11.85□□□□□ -0.51
LIMCH1-205ENST00000503057 BARHL2Q9NY43 387 aa11.85□□□□□ -0.51
LIMCH1-205ENST00000503057 BUB1O43683 1085 aa11.85□□□□□ -0.51
LIMCH1-205ENST00000503057 ATP5DP30049 168 aa11.85□□□□□ -0.51
LIMCH1-205ENST00000503057 SP4Q02446 784 aa11.85□□□□□ -0.51
LIMCH1-205ENST00000503057 ELOA2Q8IYF1 753 aaPredicted RBP11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms