RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 OTOP1Q7RTM1 612 aa13.69□□□□□ -0.22
CUX1-210ENST00000497815 CCDC12Q8WUD4 166 aaPredicted RBP13.69□□□□□ -0.22
CUX1-210ENST00000497815 SHISA4Q96DD7 197 aa13.69□□□□□ -0.22
CUX1-210ENST00000497815 PURBQ96QR8 312 aaKnown RBP13.69□□□□□ -0.22
CUX1-210ENST00000497815 PSTPIP2Q9H939 334 aa13.69□□□□□ -0.22
CUX1-210ENST00000497815 CYP39A1Q9NYL5 469 aa13.69□□□□□ -0.22
CUX1-210ENST00000497815 SRRDQ9UH36 339 aa13.69□□□□□ -0.22
CUX1-210ENST00000497815 GJD2Q9UKL4 321 aa13.69□□□□□ -0.22
CUX1-210ENST00000497815 KCNJ14Q9UNX9 436 aa13.69□□□□□ -0.22
CUX1-210ENST00000497815 PFASO15067 1338 aa13.68□□□□□ -0.22
CUX1-210ENST00000497815 POTEB2H3BUK9 544 aa13.68□□□□□ -0.22
CUX1-210ENST00000497815 GCOM1H8Y6P7 765 aaPredicted RBP13.68□□□□□ -0.22
CUX1-210ENST00000497815 COBLO75128 1261 aa13.68□□□□□ -0.22
CUX1-210ENST00000497815 POLR2MP0CAP2 368 aa13.68□□□□□ -0.22
CUX1-210ENST00000497815 ADCY7P51828 1080 aa13.68□□□□□ -0.22
CUX1-210ENST00000497815 NLRP5P59047 1200 aa13.68□□□□□ -0.22
CUX1-210ENST00000497815 CNTN2Q02246 1040 aa13.68□□□□□ -0.22
CUX1-210ENST00000497815 MAP2K5Q13163 448 aa13.68□□□□□ -0.22
CUX1-210ENST00000497815 BECN1Q14457 450 aa13.68□□□□□ -0.22
CUX1-210ENST00000497815 UBE2SQ16763 222 aa13.68□□□□□ -0.22
CUX1-210ENST00000497815 USP17L6PQ6QN14 398 aa13.68□□□□□ -0.22
CUX1-210ENST00000497815 FCHSD1Q86WN1 690 aa13.68□□□□□ -0.22
CUX1-210ENST00000497815 ABRAQ8N0Z2 381 aa13.68□□□□□ -0.22
CUX1-210ENST00000497815 CCDC148Q8NFR7 591 aa13.68□□□□□ -0.22
CUX1-210ENST00000497815 SOCS4Q8WXH5 440 aa13.68□□□□□ -0.22
CUX1-210ENST00000497815 CUL5Q93034 780 aa13.68□□□□□ -0.22
CUX1-210ENST00000497815 C6orf50Q9HD87 102 aa13.68□□□□□ -0.22
CUX1-210ENST00000497815 TSHZ2Q9NRE2 1034 aa13.68□□□□□ -0.22
CUX1-210ENST00000497815 PLXNB2O15031 1838 aa13.68□□□□□ -0.22
CUX1-210ENST00000497815 MYH6P13533 1939 aa13.68□□□□□ -0.22
CUX1-210ENST00000497815 ADAMTS3O15072 1205 aa13.67□□□□□ -0.22
CUX1-210ENST00000497815 GNRH1P01148 92 aa13.67□□□□□ -0.22
CUX1-210ENST00000497815 XBP1P17861 261 aa13.67□□□□□ -0.22
CUX1-210ENST00000497815 RGS2P41220 211 aa13.67□□□□□ -0.22
CUX1-210ENST00000497815 HSD17B4P51659 736 aa13.67□□□□□ -0.22
CUX1-210ENST00000497815 MRPL12P52815 198 aaKnown RBP13.67□□□□□ -0.22
CUX1-210ENST00000497815 GUCY1B3Q02153 619 aa13.67□□□□□ -0.22
CUX1-210ENST00000497815 TRIM29Q14134 588 aa13.67□□□□□ -0.22
CUX1-210ENST00000497815 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.67□□□□□ -0.226e-12■■■■■ 49.8
CUX1-210ENST00000497815 RGS22Q8NE09 1264 aa13.67□□□□□ -0.22
CUX1-210ENST00000497815 NPLOC4Q8TAT6 608 aa13.67□□□□□ -0.22
CUX1-210ENST00000497815 RAET1EQ8TD07 263 aa13.67□□□□□ -0.22
CUX1-210ENST00000497815 SYTL5Q8TDW5 730 aaPredicted RBP13.67□□□□□ -0.22
CUX1-210ENST00000497815 USP6NLQ92738 828 aa13.67□□□□□ -0.22
CUX1-210ENST00000497815 RIC8AQ9NPQ8 531 aa13.67□□□□□ -0.22
CUX1-210ENST00000497815 SH3GLB2Q9NR46 395 aa13.67□□□□□ -0.22
CUX1-210ENST00000497815 TMEM260Q9NX78 707 aa13.67□□□□□ -0.22
CUX1-210ENST00000497815 COL20A1Q9P218 1284 aa13.67□□□□□ -0.22
CUX1-210ENST00000497815 MGAMO43451 1857 aa13.67□□□□□ -0.22
CUX1-210ENST00000497815 DNAJC25-GNG10A0A024R161 153 aa13.66□□□□□ -0.22
CUX1-210ENST00000497815 SOWAHBA6NEL2 793 aa13.66□□□□□ -0.22
CUX1-210ENST00000497815 MEIS2O14770 477 aa13.66□□□□□ -0.22
CUX1-210ENST00000497815 ANP32AP39687 249 aaKnown RBP13.66□□□□□ -0.22
CUX1-210ENST00000497815 CCL14Q16627 93 aa13.66□□□□□ -0.22
CUX1-210ENST00000497815 ZNF792Q3KQV3 632 aa13.66□□□□□ -0.22
CUX1-210ENST00000497815 CTU1Q7Z7A3 348 aaKnown RBP13.66□□□□□ -0.22
CUX1-210ENST00000497815 FAM133AQ8N9E0 248 aa13.66□□□□□ -0.22
CUX1-210ENST00000497815 PGBD1Q96JS3 809 aa13.66□□□□□ -0.22
CUX1-210ENST00000497815 C8orf76Q96K31 380 aa13.66□□□□□ -0.22
CUX1-210ENST00000497815 TAAR1Q96RJ0 339 aa13.66□□□□□ -0.22
CUX1-210ENST00000497815 APBA2Q99767 749 aa13.66□□□□□ -0.22
CUX1-210ENST00000497815 ZMYND12Q9H0C1 365 aa13.66□□□□□ -0.22
CUX1-210ENST00000497815 SLC5A4Q9NY91 659 aa13.66□□□□□ -0.22
CUX1-210ENST00000497815 BIN2Q9UBW5 565 aaPredicted RBP13.66□□□□□ -0.22
CUX1-210ENST00000497815 KIF3AQ9Y496 699 aa13.66□□□□□ -0.22
CUX1-210ENST00000497815 DDX49Q9Y6V7 483 aaKnown RBP13.66□□□□□ -0.22
CUX1-210ENST00000497815 SMCHD1A6NHR9 2005 aa13.66□□□□□ -0.22
CUX1-210ENST00000497815 ESYT2A0FGR8 921 aa13.65□□□□□ -0.22
CUX1-210ENST00000497815 ELNP15502 786 aa13.65□□□□□ -0.22
CUX1-210ENST00000497815 GNA11P29992 359 aa13.65□□□□□ -0.22
CUX1-210ENST00000497815 UBXN2AP68543 259 aa13.65□□□□□ -0.22
CUX1-210ENST00000497815 JAKMIP3Q5VZ66 844 aa13.65□□□□□ -0.22
CUX1-210ENST00000497815 KRT40Q6A162 431 aa13.65□□□□□ -0.22
CUX1-210ENST00000497815 RASGRP4Q8TDF6 673 aa13.65□□□□□ -0.22
CUX1-210ENST00000497815 INTS4Q96HW7 963 aaKnown RBP13.65□□□□□ -0.22
CUX1-210ENST00000497815 PHF20Q9BVI0 1012 aa13.65□□□□□ -0.22
CUX1-210ENST00000497815 PRDM10Q9NQV6 1147 aa13.65□□□□□ -0.22
CUX1-210ENST00000497815 PTPN22Q9Y2R2 807 aa13.65□□□□□ -0.22
CUX1-210ENST00000497815 PTCH2Q9Y6C5 1203 aa13.65□□□□□ -0.22
CUX1-210ENST00000497815 RBBP6Q7Z6E9 1792 aaKnown RBP13.65□□□□□ -0.22
CUX1-210ENST00000497815 ZNF236Q9UL36 1845 aa13.64□□□□□ -0.23
CUX1-210ENST00000497815 CASP8AP2Q9UKL3 1982 aa13.64□□□□□ -0.23
CUX1-210ENST00000497815 SPDYE3A6NKU9 549 aa13.64□□□□□ -0.23
CUX1-210ENST00000497815 PIK3CDO00329 1044 aa13.64□□□□□ -0.23
CUX1-210ENST00000497815 ADCY3O60266 1144 aa13.64□□□□□ -0.23
CUX1-210ENST00000497815 HOXC6P09630 235 aa13.64□□□□□ -0.23
CUX1-210ENST00000497815 EIF2AK2P19525 551 aaKnown RBP13.64□□□□□ -0.23
CUX1-210ENST00000497815 PRMT2P55345 433 aa13.64□□□□□ -0.23
CUX1-210ENST00000497815 GHRHRQ02643 423 aa13.64□□□□□ -0.23
CUX1-210ENST00000497815 ARHGEF16Q5VV41 709 aa13.64□□□□□ -0.23
CUX1-210ENST00000497815 BLIDQ8IZY5 108 aa13.64□□□□□ -0.23
CUX1-210ENST00000497815 REXO1Q8N1G1 1221 aaKnown RBP13.64□□□□□ -0.23
CUX1-210ENST00000497815 BICD2Q8TD16 824 aa13.64□□□□□ -0.23
CUX1-210ENST00000497815 MAML3Q96JK9 1138 aa13.64□□□□□ -0.23
CUX1-210ENST00000497815 FGD4Q96M96 766 aa13.64□□□□□ -0.23
CUX1-210ENST00000497815 RMDN3Q96TC7 470 aa13.64□□□□□ -0.23
CUX1-210ENST00000497815 GLT8D2Q9H1C3 349 aa13.64□□□□□ -0.23
CUX1-210ENST00000497815 MAP3K20Q9NYL2 800 aaKnown RBP13.64□□□□□ -0.23
CUX1-210ENST00000497815 FLRT1Q9NZU1 646 aa13.64□□□□□ -0.23
CUX1-210ENST00000497815 ADD3Q9UEY8 706 aaKnown RBP13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms