RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 HTATIP2Q9BUP3 242 aa18.46■□□□□ 0.55
LIME1-209ENST00000494776 RBM28Q9NW13 759 aaKnown RBP18.46■□□□□ 0.55
LIME1-209ENST00000494776 BRPF3Q9ULD4 1205 aa18.46■□□□□ 0.55
LIME1-209ENST00000494776 CYP46A1Q9Y6A2 500 aa18.46■□□□□ 0.55
LIME1-209ENST00000494776 GOLGA8AA7E2F4 631 aa18.45■□□□□ 0.54
LIME1-209ENST00000494776 GOLGA8BA8MQT2 603 aa18.45■□□□□ 0.54
LIME1-209ENST00000494776 B4DLN1 442 aa18.45■□□□□ 0.54
LIME1-209ENST00000494776 PPP1R11O60927 126 aaPredicted RBP18.45■□□□□ 0.54
LIME1-209ENST00000494776 CFBP00751 764 aa18.45■□□□□ 0.54
LIME1-209ENST00000494776 ALDH5A1P51649 535 aaPredicted RBP18.45■□□□□ 0.54
LIME1-209ENST00000494776 MRPL12P52815 198 aaKnown RBP18.45■□□□□ 0.54
LIME1-209ENST00000494776 APOBRQ0VD83 1088 aa18.45■□□□□ 0.54
LIME1-209ENST00000494776 RTN1Q16799 776 aa18.45■□□□□ 0.54
LIME1-209ENST00000494776 RUFY3Q7L099 469 aa18.45■□□□□ 0.54
LIME1-209ENST00000494776 SRBD1Q8N5C6 995 aaKnown RBP18.45■□□□□ 0.54
LIME1-209ENST00000494776 DIS3LQ8TF46 1054 aaKnown RBP18.45■□□□□ 0.54
LIME1-209ENST00000494776 TBC1D5Q92609 795 aa18.45■□□□□ 0.54
LIME1-209ENST00000494776 DPF3Q92784 378 aa18.45■□□□□ 0.54
LIME1-209ENST00000494776 BRF1Q92994 677 aa18.45■□□□□ 0.54
LIME1-209ENST00000494776 MAF1Q9H063 256 aa18.45■□□□□ 0.54
LIME1-209ENST00000494776 SMCHD1A6NHR9 2005 aa18.45■□□□□ 0.54
LIME1-209ENST00000494776 PDE4DQ08499 809 aa18.44■□□□□ 0.54
LIME1-209ENST00000494776 NOL8Q76FK4 1167 aaKnown RBP18.44■□□□□ 0.54
LIME1-209ENST00000494776 EEPD1Q7L9B9 569 aa18.44■□□□□ 0.54
LIME1-209ENST00000494776 UBE2Q1Q7Z7E8 422 aa18.44■□□□□ 0.54
LIME1-209ENST00000494776 DNERQ8NFT8 737 aa18.44■□□□□ 0.54
LIME1-209ENST00000494776 C11orf49Q9H6J7 331 aa18.44■□□□□ 0.54
LIME1-209ENST00000494776 ZSWIM6Q9HCJ5 1215 aa18.44■□□□□ 0.54
LIME1-209ENST00000494776 XPNPEP3Q9NQH7 507 aa18.44■□□□□ 0.54
LIME1-209ENST00000494776 DDX49Q9Y6V7 483 aaKnown RBP18.44■□□□□ 0.54
LIME1-209ENST00000494776 LOC102724159A0A0B4J2E5 919 aa18.43■□□□□ 0.54
LIME1-209ENST00000494776 KBTBD13C9JR72 458 aa18.43■□□□□ 0.54
LIME1-209ENST00000494776 METAP2P50579 478 aaKnown RBP eCLIP18.43■□□□□ 0.54
LIME1-209ENST00000494776 PWP2Q15269 919 aaKnown RBP18.43■□□□□ 0.54
LIME1-209ENST00000494776 CCDC144BQ3MJ40 725 aa18.43■□□□□ 0.54
LIME1-209ENST00000494776 GJC2Q5T442 439 aaPredicted RBP18.43■□□□□ 0.54
LIME1-209ENST00000494776 TMTC3Q6ZXV5 915 aa18.43■□□□□ 0.54
LIME1-209ENST00000494776 SYTL5Q8TDW5 730 aaPredicted RBP18.43■□□□□ 0.54
LIME1-209ENST00000494776 ASTN1O14525 1302 aa18.43■□□□□ 0.54
LIME1-209ENST00000494776 MYH6P13533 1939 aa18.43■□□□□ 0.54
LIME1-209ENST00000494776 CCDC196A0A1B0GTZ2 297 aa18.42■□□□□ 0.54
LIME1-209ENST00000494776 DNM1LO00429 736 aa18.42■□□□□ 0.54
LIME1-209ENST00000494776 FBXO16Q8IX29 292 aaPredicted RBP18.42■□□□□ 0.54
LIME1-209ENST00000494776 NSUN6Q8TEA1 469 aaKnown RBP18.42■□□□□ 0.54
LIME1-209ENST00000494776 LENG1Q96BZ8 264 aaPredicted RBP18.42■□□□□ 0.54
LIME1-209ENST00000494776 TM6SF1Q9BZW5 370 aa18.42■□□□□ 0.54
LIME1-209ENST00000494776 GCOM1H8Y6P7 765 aaPredicted RBP18.41■□□□□ 0.54
LIME1-209ENST00000494776 PGK1P00558 417 aa18.41■□□□□ 0.54
LIME1-209ENST00000494776 POLR2MP0CAP2 368 aa18.41■□□□□ 0.54
LIME1-209ENST00000494776 MNX1P50219 401 aaPredicted RBP18.41■□□□□ 0.54
LIME1-209ENST00000494776 RCAN1P53805 252 aa18.41■□□□□ 0.54
LIME1-209ENST00000494776 TNFAIP2Q03169 654 aa18.41■□□□□ 0.54
LIME1-209ENST00000494776 PPP2R5BQ15173 497 aa18.41■□□□□ 0.54
LIME1-209ENST00000494776 ARHGEF16Q5VV41 709 aa18.41■□□□□ 0.54
LIME1-209ENST00000494776 RNF180Q86T96 592 aa18.41■□□□□ 0.54
LIME1-209ENST00000494776 FBXL16Q8N461 479 aa18.41■□□□□ 0.54
LIME1-209ENST00000494776 SAMD3Q8N6K7 520 aa18.41■□□□□ 0.54
LIME1-209ENST00000494776 MORC4Q8TE76 937 aa18.41■□□□□ 0.54
LIME1-209ENST00000494776 TAAR1Q96RJ0 339 aa18.41■□□□□ 0.54
LIME1-209ENST00000494776 RMDN3Q96TC7 470 aa18.41■□□□□ 0.54
LIME1-209ENST00000494776 UPF3BQ9BZI7 483 aaKnown RBP18.41■□□□□ 0.54
LIME1-209ENST00000494776 SPC25Q9HBM1 224 aa18.41■□□□□ 0.54
LIME1-209ENST00000494776 VTA1Q9NP79 307 aa18.41■□□□□ 0.54
LIME1-209ENST00000494776 MAP3K20Q9NYL2 800 aaKnown RBP18.41■□□□□ 0.54
LIME1-209ENST00000494776 hCG_1642624A0A1W2PR95 340 aa18.4■□□□□ 0.54
LIME1-209ENST00000494776 DUSP11O75319 330 aaKnown RBP18.4■□□□□ 0.54
LIME1-209ENST00000494776 HOXA13P31271 388 aaPredicted RBP18.4■□□□□ 0.54
LIME1-209ENST00000494776 ADCYAP1R1P41586 468 aa18.4■□□□□ 0.54
LIME1-209ENST00000494776 HSD17B4P51659 736 aa18.4■□□□□ 0.54
LIME1-209ENST00000494776 LRRC41Q15345 812 aa18.4■□□□□ 0.54
LIME1-209ENST00000494776 CUL5Q93034 780 aa18.4■□□□□ 0.54
LIME1-209ENST00000494776 SENP6Q9GZR1 1112 aaPredicted RBP18.4■□□□□ 0.54
LIME1-209ENST00000494776 KATNBL1Q9H079 304 aa18.4■□□□□ 0.54
LIME1-209ENST00000494776 PDRG1Q9NUG6 133 aa18.4■□□□□ 0.54
LIME1-209ENST00000494776 COL20A1Q9P218 1284 aa18.4■□□□□ 0.54
LIME1-209ENST00000494776 BAZ2BQ9UIF8 2168 aaKnown RBP18.4■□□□□ 0.54
LIME1-209ENST00000494776 OPLAHO14841 1288 aa18.39■□□□□ 0.53
LIME1-209ENST00000494776 ANAPC15P60006 121 aa18.39■□□□□ 0.53
LIME1-209ENST00000494776 IQSEC1Q6DN90 963 aa18.39■□□□□ 0.53
LIME1-209ENST00000494776 HEATR3Q7Z4Q2 680 aa18.39■□□□□ 0.53
LIME1-209ENST00000494776 AGXT2Q9BYV1 514 aa18.39■□□□□ 0.53
LIME1-209ENST00000494776 PDGFCQ9NRA1 345 aa18.39■□□□□ 0.53
LIME1-209ENST00000494776 FRMPD3Q5JV73 1810 aa18.38■□□□□ 0.53
LIME1-209ENST00000494776 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.38■□□□□ 0.53
LIME1-209ENST00000494776 EVI5O60447 810 aa18.38■□□□□ 0.53
LIME1-209ENST00000494776 SEC24BO95487 1268 aa18.38■□□□□ 0.53
LIME1-209ENST00000494776 C6orf222P0C671 652 aaPredicted RBP18.38■□□□□ 0.53
LIME1-209ENST00000494776 EIF2AK2P19525 551 aaKnown RBP18.38■□□□□ 0.53
LIME1-209ENST00000494776 CDC27P30260 824 aa18.38■□□□□ 0.53
LIME1-209ENST00000494776 ADD1P35611 737 aaKnown RBP18.38■□□□□ 0.53
LIME1-209ENST00000494776 TAPT1Q6NXT6 567 aa18.38■□□□□ 0.53
LIME1-209ENST00000494776 FCHSD1Q86WN1 690 aa18.38■□□□□ 0.53
LIME1-209ENST00000494776 SMARCC2Q8TAQ2 1214 aa18.38■□□□□ 0.53
LIME1-209ENST00000494776 IWS1Q96ST2 819 aa18.38■□□□□ 0.53
LIME1-209ENST00000494776 V9GY48 417 aaPredicted RBP18.38■□□□□ 0.53
LIME1-209ENST00000494776 MCM3APO60318 1980 aa18.38■□□□□ 0.53
LIME1-209ENST00000494776 CNTNAP5Q8WYK1 1306 aa18.38■□□□□ 0.53
LIME1-209ENST00000494776 SYNRGQ9UMZ2 1314 aa18.38■□□□□ 0.53
LIME1-209ENST00000494776 COL6A1P12109 1028 aa18.37■□□□□ 0.53
LIME1-209ENST00000494776 EDNRBP24530 442 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms