RNA–Protein interactions for RNA: ENST00000490032.5

HMGN1-218, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 405 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-218ENST00000490032 KRTAP9-7A8MTY7 169 aa6.33□□□□□ -1.4
HMGN1-218ENST00000490032 SMAD7O15105 426 aaKnown RBP6.33□□□□□ -1.4
HMGN1-218ENST00000490032 PAMP19021 973 aa6.33□□□□□ -1.4
HMGN1-218ENST00000490032 TACR1P25103 407 aa6.33□□□□□ -1.4
HMGN1-218ENST00000490032 RBM10P98175 930 aaKnown RBP6.33□□□□□ -1.4
HMGN1-218ENST00000490032 TRIM59Q8IWR1 403 aa6.33□□□□□ -1.4
HMGN1-218ENST00000490032 MRGPRX3Q96LB0 322 aa6.33□□□□□ -1.4
HMGN1-218ENST00000490032 KRTAP4-7Q9BYR0 210 aa6.33□□□□□ -1.4
HMGN1-218ENST00000490032 ACTR10Q9NZ32 417 aa6.33□□□□□ -1.4
HMGN1-218ENST00000490032 NPHP3-ACAD11A0A0J9YXS1 232 aa6.32□□□□□ -1.4
HMGN1-218ENST00000490032 BUB1BO60566 1050 aaPredicted RBP6.32□□□□□ -1.4
HMGN1-218ENST00000490032 PPP1R11O60927 126 aaPredicted RBP6.32□□□□□ -1.4
HMGN1-218ENST00000490032 KCNH1O95259 989 aa6.32□□□□□ -1.4
HMGN1-218ENST00000490032 SSBP05455 408 aaKnown RBP eCLIP6.32□□□□□ -1.4
HMGN1-218ENST00000490032 INHBBP09529 407 aa6.32□□□□□ -1.4
HMGN1-218ENST00000490032 AFF3P51826 1226 aaKnown RBP6.32□□□□□ -1.4
HMGN1-218ENST00000490032 ZNF200P98182 395 aaPredicted RBP6.32□□□□□ -1.4
HMGN1-218ENST00000490032 CAP1Q01518 475 aa6.32□□□□□ -1.4
HMGN1-218ENST00000490032 GNL2Q13823 731 aaKnown RBP6.32□□□□□ -1.4
HMGN1-218ENST00000490032 CNKSR3Q6P9H4 555 aa6.32□□□□□ -1.4
HMGN1-218ENST00000490032 LZTR1Q8N653 840 aa6.32□□□□□ -1.4
HMGN1-218ENST00000490032 KCNC2Q96PR1 638 aa6.32□□□□□ -1.4
HMGN1-218ENST00000490032 TINF2Q9BSI4 451 aa6.32□□□□□ -1.4
HMGN1-218ENST00000490032 MTA3Q9BTC8 594 aa6.32□□□□□ -1.4
HMGN1-218ENST00000490032 FBLN5Q9UBX5 448 aa6.32□□□□□ -1.4
HMGN1-218ENST00000490032 PRKAG3Q9UGI9 489 aa6.32□□□□□ -1.4
HMGN1-218ENST00000490032 HCFC2Q9Y5Z7 792 aa6.32□□□□□ -1.4
HMGN1-218ENST00000490032 MRVI1Q9Y6F6 885 aa6.32□□□□□ -1.4
HMGN1-218ENST00000490032 F8W031 263 aaPredicted RBP6.31□□□□□ -1.4
HMGN1-218ENST00000490032 NOP56O00567 594 aaKnown RBP6.31□□□□□ -1.4
HMGN1-218ENST00000490032 FGRP09769 529 aa6.31□□□□□ -1.4
HMGN1-218ENST00000490032 PFKLP17858 780 aa6.31□□□□□ -1.4
HMGN1-218ENST00000490032 NCKAP1LP55160 1127 aa6.31□□□□□ -1.4
HMGN1-218ENST00000490032 PRR5P85299 388 aa6.31□□□□□ -1.4
HMGN1-218ENST00000490032 TARBP2Q15633 366 aaKnown RBP6.31□□□□□ -1.4
HMGN1-218ENST00000490032 C6orf15Q6UXA7 325 aaPredicted RBP6.31□□□□□ -1.4
HMGN1-218ENST00000490032 CPNE8Q86YQ8 564 aa6.31□□□□□ -1.4
HMGN1-218ENST00000490032 MARCH10Q8NA82 808 aaPredicted RBP6.31□□□□□ -1.4
HMGN1-218ENST00000490032 NETO2Q8NC67 525 aa6.31□□□□□ -1.4
HMGN1-218ENST00000490032 ZNF428Q96B54 188 aa6.31□□□□□ -1.4
HMGN1-218ENST00000490032 MMP19Q99542 508 aa6.31□□□□□ -1.4
HMGN1-218ENST00000490032 NKX2-4Q9H2Z4 354 aa6.31□□□□□ -1.4
HMGN1-218ENST00000490032 PARD6AQ9NPB6 346 aa6.31□□□□□ -1.4
HMGN1-218ENST00000490032 CYP26B1Q9NR63 512 aa6.31□□□□□ -1.4
HMGN1-218ENST00000490032 ZC3H12DA2A288 527 aaKnown RBP6.3□□□□□ -1.4
HMGN1-218ENST00000490032 C7orf72A4D263 438 aa6.3□□□□□ -1.4
HMGN1-218ENST00000490032 TRIM13O60858 407 aa6.3□□□□□ -1.4
HMGN1-218ENST00000490032 ETFBP38117 255 aa6.3□□□□□ -1.4
HMGN1-218ENST00000490032 CYP4F3Q08477 520 aa6.3□□□□□ -1.4
HMGN1-218ENST00000490032 SCRN1Q12765 414 aa6.3□□□□□ -1.4
HMGN1-218ENST00000490032 GTF2IRD2BQ6EKJ0 949 aa6.3□□□□□ -1.4
HMGN1-218ENST00000490032 GTF2IRD2Q86UP8 949 aa6.3□□□□□ -1.4
HMGN1-218ENST00000490032 CABP7Q86V35 215 aa6.3□□□□□ -1.4
HMGN1-218ENST00000490032 FAM178BQ8IXR5 827 aa6.3□□□□□ -1.4
HMGN1-218ENST00000490032 TSPAN17Q96FV3 270 aa6.3□□□□□ -1.4
HMGN1-218ENST00000490032 RNF38Q9H0F5 515 aa6.3□□□□□ -1.4
HMGN1-218ENST00000490032 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP6.3□□□□□ -1.4
HMGN1-218ENST00000490032 PLA2G2DQ9UNK4 145 aa6.3□□□□□ -1.4
HMGN1-218ENST00000490032 RWDD3Q9Y3V2 267 aa6.3□□□□□ -1.4
HMGN1-218ENST00000490032 NPHS1O60500 1241 aa6.29□□□□□ -1.4
HMGN1-218ENST00000490032 PLS3P13797 630 aa6.29□□□□□ -1.4
HMGN1-218ENST00000490032 BMP7P18075 431 aa6.29□□□□□ -1.4
HMGN1-218ENST00000490032 HOXA5P20719 270 aa6.29□□□□□ -1.4
HMGN1-218ENST00000490032 MBLAC2Q68D91 279 aa6.29□□□□□ -1.4
HMGN1-218ENST00000490032 LILRA6Q6PI73 481 aa6.29□□□□□ -1.4
HMGN1-218ENST00000490032 PWWP2AQ96N64 755 aa6.29□□□□□ -1.4
HMGN1-218ENST00000490032 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.29□□□□□ -1.43e-14■■■□□ 15.2
HMGN1-218ENST00000490032 GPRC5CQ9NQ84 441 aa6.29□□□□□ -1.4
HMGN1-218ENST00000490032 CLEC1BQ9P126 229 aa6.29□□□□□ -1.4
HMGN1-218ENST00000490032 GULP1Q9UBP9 304 aa6.29□□□□□ -1.4
HMGN1-218ENST00000490032 B2RBV5 119 aa6.28□□□□□ -1.4
HMGN1-218ENST00000490032 SUSD5O60279 629 aa6.28□□□□□ -1.4
HMGN1-218ENST00000490032 THBDP07204 575 aa6.28□□□□□ -1.4
HMGN1-218ENST00000490032 ATF2P15336 505 aa6.28□□□□□ -1.4
HMGN1-218ENST00000490032 ARID5AQ03989 594 aa6.28□□□□□ -1.4
HMGN1-218ENST00000490032 LARP1BQ659C4 914 aaKnown RBP6.28□□□□□ -1.4
HMGN1-218ENST00000490032 WWC2Q6AWC2 1192 aa6.28□□□□□ -1.4
HMGN1-218ENST00000490032 MRM1Q6IN84 353 aaKnown RBP6.28□□□□□ -1.4
HMGN1-218ENST00000490032 MCF2L2Q86YR7 1114 aa6.28□□□□□ -1.4
HMGN1-218ENST00000490032 SLC43A3Q8NBI5 491 aa6.28□□□□□ -1.4
HMGN1-218ENST00000490032 NPLOC4Q8TAT6 608 aa6.28□□□□□ -1.4
HMGN1-218ENST00000490032 FRS2Q8WU20 508 aa6.28□□□□□ -1.4
HMGN1-218ENST00000490032 PEX11GQ96HA9 241 aa6.28□□□□□ -1.4
HMGN1-218ENST00000490032 LGR4Q9BXB1 951 aa6.28□□□□□ -1.4
HMGN1-218ENST00000490032 ZCCHC4Q9H5U6 513 aa6.28□□□□□ -1.4
HMGN1-218ENST00000490032 ZNF408Q9H9D4 720 aa6.28□□□□□ -1.4
HMGN1-218ENST00000490032 DBR1Q9UK59 544 aaKnown RBP6.28□□□□□ -1.4
HMGN1-218ENST00000490032 SCG5P05408 212 aa6.27□□□□□ -1.41
HMGN1-218ENST00000490032 ASGR2P07307 311 aa6.27□□□□□ -1.41
HMGN1-218ENST00000490032 NCAM1P13591 858 aa6.27□□□□□ -1.41
HMGN1-218ENST00000490032 LIMS1P48059 325 aa6.27□□□□□ -1.41
HMGN1-218ENST00000490032 SLC9A5Q14940 896 aa6.27□□□□□ -1.41
HMGN1-218ENST00000490032 FXNQ16595 210 aa6.27□□□□□ -1.41
HMGN1-218ENST00000490032 ZNF227Q86WZ6 799 aa6.27□□□□□ -1.41
HMGN1-218ENST00000490032 NLGN1Q8N2Q7 840 aa6.27□□□□□ -1.41
HMGN1-218ENST00000490032 LINC01356Q8N9X3 169 aa6.27□□□□□ -1.41
HMGN1-218ENST00000490032 PLEKHO2Q8TD55 490 aa6.27□□□□□ -1.41
HMGN1-218ENST00000490032 MICAL1Q8TDZ2 1067 aa6.27□□□□□ -1.41
HMGN1-218ENST00000490032 DPF3Q92784 378 aa6.27□□□□□ -1.41
HMGN1-218ENST00000490032 C20orf173Q96LM9 149 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms