RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 RAD50Q92878 1312 aa14.4□□□□□ -0.1
SDC3-204ENST00000487984 LCTP09848 1927 aa14.39□□□□□ -0.11
SDC3-204ENST00000487984 COL6A3P12111 3177 aa14.39□□□□□ -0.11
SDC3-204ENST00000487984 LOC102724159A0A0B4J2E5 919 aa14.39□□□□□ -0.11
SDC3-204ENST00000487984 ARVCFO00192 962 aa14.39□□□□□ -0.11
SDC3-204ENST00000487984 DYNC1LI2O43237 492 aaPredicted RBP14.39□□□□□ -0.11
SDC3-204ENST00000487984 RPS6P62753 249 aaKnown RBP14.39□□□□□ -0.11
SDC3-204ENST00000487984 FPGSQ05932 587 aa14.39□□□□□ -0.11
SDC3-204ENST00000487984 PWP2Q15269 919 aaKnown RBP14.39□□□□□ -0.11
SDC3-204ENST00000487984 CDC37Q16543 378 aaPredicted RBP14.39□□□□□ -0.11
SDC3-204ENST00000487984 USH1GQ495M9 461 aa14.39□□□□□ -0.11
SDC3-204ENST00000487984 ASPRV1Q53RT3 343 aa14.39□□□□□ -0.11
SDC3-204ENST00000487984 CXCL17Q6UXB2 119 aa14.39□□□□□ -0.11
SDC3-204ENST00000487984 KIAA1211Q6ZU35 1233 aa14.39□□□□□ -0.11
SDC3-204ENST00000487984 UBAC1Q9BSL1 405 aa14.39□□□□□ -0.11
SDC3-204ENST00000487984 Q9Y3F1 56 aa14.39□□□□□ -0.11
SDC3-204ENST00000487984 TIMP1P01033 207 aa14.38□□□□□ -0.11
SDC3-204ENST00000487984 CHMLP26374 656 aa14.38□□□□□ -0.11
SDC3-204ENST00000487984 DUSP28Q4G0W2 176 aa14.38□□□□□ -0.11
SDC3-204ENST00000487984 FAM109BQ6ICB4 259 aaPredicted RBP14.38□□□□□ -0.11
SDC3-204ENST00000487984 FAM126BQ8IXS8 530 aa14.38□□□□□ -0.11
SDC3-204ENST00000487984 ADGRF4Q8IZF3 695 aa14.38□□□□□ -0.11
SDC3-204ENST00000487984 RBM47A0AV96 593 aaKnown RBP14.37□□□□□ -0.11
SDC3-204ENST00000487984 ZEB2O60315 1214 aa14.37□□□□□ -0.11
SDC3-204ENST00000487984 CABYRO75952 493 aa14.37□□□□□ -0.11
SDC3-204ENST00000487984 PARP1P09874 1014 aaKnown RBP14.37□□□□□ -0.11
SDC3-204ENST00000487984 EDNRBP24530 442 aa14.37□□□□□ -0.11
SDC3-204ENST00000487984 PTH1RQ03431 593 aa14.37□□□□□ -0.11
SDC3-204ENST00000487984 IFIT1BQ5T764 474 aaKnown RBP14.37□□□□□ -0.11
SDC3-204ENST00000487984 CYB5R4Q7L1T6 521 aa14.37□□□□□ -0.11
SDC3-204ENST00000487984 SLC43A3Q8NBI5 491 aa14.37□□□□□ -0.11
SDC3-204ENST00000487984 RGS22Q8NE09 1264 aa14.37□□□□□ -0.11
SDC3-204ENST00000487984 DNERQ8NFT8 737 aa14.37□□□□□ -0.11
SDC3-204ENST00000487984 RUFY2Q8WXA3 655 aa14.37□□□□□ -0.11
SDC3-204ENST00000487984 RNPC3Q96LT9 517 aaKnown RBP14.37□□□□□ -0.11
SDC3-204ENST00000487984 WDR11Q9BZH6 1224 aa14.37□□□□□ -0.11
SDC3-204ENST00000487984 TLR3O15455 904 aaKnown RBP14.36□□□□□ -0.11
SDC3-204ENST00000487984 CD4P01730 458 aa14.36□□□□□ -0.11
SDC3-204ENST00000487984 CYP21A2P08686 494 aa14.36□□□□□ -0.11
SDC3-204ENST00000487984 PDE4DQ08499 809 aa14.36□□□□□ -0.11
SDC3-204ENST00000487984 SEC23AQ15436 765 aa14.36□□□□□ -0.11
SDC3-204ENST00000487984 QRICH1Q2TAL8 776 aa14.36□□□□□ -0.11
SDC3-204ENST00000487984 ERICH6BQ5W0A0 696 aa14.36□□□□□ -0.11
SDC3-204ENST00000487984 MFSD5Q6N075 450 aa14.36□□□□□ -0.11
SDC3-204ENST00000487984 FAM161BQ96MY7 647 aa14.36□□□□□ -0.11
SDC3-204ENST00000487984 STXBP5LQ9Y2K9 1186 aa14.36□□□□□ -0.11
SDC3-204ENST00000487984 GRIN2DO15399 1336 aa14.36□□□□□ -0.11
SDC3-204ENST00000487984 ABCB11O95342 1321 aa14.36□□□□□ -0.11
SDC3-204ENST00000487984 SGSM2O43147 1006 aa14.35□□□□□ -0.11
SDC3-204ENST00000487984 DHX16O60231 1041 aaKnown RBP14.35□□□□□ -0.11
SDC3-204ENST00000487984 PSMC6P62333 389 aa14.35□□□□□ -0.11
SDC3-204ENST00000487984 SMAD3P84022 425 aaKnown RBP14.35□□□□□ -0.11
SDC3-204ENST00000487984 ITGA7Q13683 1181 aa14.35□□□□□ -0.11
SDC3-204ENST00000487984 STAG2Q8N3U4 1231 aa14.35□□□□□ -0.11
SDC3-204ENST00000487984 TBC1D5Q92609 795 aa14.35□□□□□ -0.11
SDC3-204ENST00000487984 GUCD1Q96NT3 240 aa14.35□□□□□ -0.11
SDC3-204ENST00000487984 MPHOSPH6Q99547 160 aaKnown RBP14.35□□□□□ -0.11
SDC3-204ENST00000487984 PPP1R12CQ9BZL4 782 aa14.35□□□□□ -0.11
SDC3-204ENST00000487984 JMJD4Q9H9V9 463 aa14.35□□□□□ -0.11
SDC3-204ENST00000487984 VAT1LQ9HCJ6 419 aa14.35□□□□□ -0.11
SDC3-204ENST00000487984 TAF6LQ9Y6J9 622 aa14.35□□□□□ -0.11
SDC3-204ENST00000487984 U3KPZ7 1027 aaPredicted RBP14.35□□□□□ -0.11
SDC3-204ENST00000487984 TRDNQ13061 729 aa14.34□□□□□ -0.11
SDC3-204ENST00000487984 PPP2R5BQ15173 497 aa14.34□□□□□ -0.11
SDC3-204ENST00000487984 ZNF697Q5TEC3 545 aa14.34□□□□□ -0.11
SDC3-204ENST00000487984 FBXO11Q86XK2 927 aa14.34□□□□□ -0.11
SDC3-204ENST00000487984 OR6J1Q8NGC5 347 aa14.34□□□□□ -0.11
SDC3-204ENST00000487984 SYTL5Q8TDW5 730 aaPredicted RBP14.34□□□□□ -0.11
SDC3-204ENST00000487984 MAF1Q9H063 256 aa14.34□□□□□ -0.11
SDC3-204ENST00000487984 COL20A1Q9P218 1284 aa14.34□□□□□ -0.11
SDC3-204ENST00000487984 MAD2L2Q9UI95 211 aa14.34□□□□□ -0.11
SDC3-204ENST00000487984 B4DLN1 442 aa14.33□□□□□ -0.12
SDC3-204ENST00000487984 KLRF2D3W0D1 207 aa14.33□□□□□ -0.12
SDC3-204ENST00000487984 CSF2RAP15509 400 aa14.33□□□□□ -0.12
SDC3-204ENST00000487984 CYP2C18P33260 490 aa14.33□□□□□ -0.12
SDC3-204ENST00000487984 CPT1AP50416 773 aa14.33□□□□□ -0.12
SDC3-204ENST00000487984 MRPL12P52815 198 aaKnown RBP14.33□□□□□ -0.12
SDC3-204ENST00000487984 PURAQ00577 322 aaKnown RBP14.33□□□□□ -0.12
SDC3-204ENST00000487984 PPIGQ13427 754 aaKnown RBP eCLIP14.33□□□□□ -0.12
SDC3-204ENST00000487984 C16orf59Q7L2K0 433 aa14.33□□□□□ -0.12
SDC3-204ENST00000487984 MCF2L2Q86YR7 1114 aa14.33□□□□□ -0.12
SDC3-204ENST00000487984 TMEM199Q8N511 208 aa14.33□□□□□ -0.12
SDC3-204ENST00000487984 SLC17A8Q8NDX2 589 aa14.33□□□□□ -0.12
SDC3-204ENST00000487984 SCFD2Q8WU76 684 aa14.33□□□□□ -0.12
SDC3-204ENST00000487984 COPS5Q92905 334 aa14.33□□□□□ -0.12
SDC3-204ENST00000487984 TAAR1Q96RJ0 339 aa14.33□□□□□ -0.12
SDC3-204ENST00000487984 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.33□□□□□ -0.12
SDC3-204ENST00000487984 SEZ6LQ9BYH1 1024 aa14.33□□□□□ -0.12
SDC3-204ENST00000487984 TRPV6Q9H1D0 765 aa14.33□□□□□ -0.12
SDC3-204ENST00000487984 MRPL11Q9Y3B7 192 aaKnown RBP14.33□□□□□ -0.12
SDC3-204ENST00000487984 GTF3C3Q9Y5Q9 886 aa14.33□□□□□ -0.12
SDC3-204ENST00000487984 PALM3A6NDB9 673 aaPredicted RBP14.32□□□□□ -0.12
SDC3-204ENST00000487984 E7EWF7 191 aa14.32□□□□□ -0.12
SDC3-204ENST00000487984 IFIT3O14879 490 aaKnown RBP14.32□□□□□ -0.12
SDC3-204ENST00000487984 NKRFO15226 690 aaKnown RBP eCLIP14.32□□□□□ -0.12
SDC3-204ENST00000487984 B4GALT4O60513 344 aa14.32□□□□□ -0.12
SDC3-204ENST00000487984 ARIH2O95376 493 aa14.32□□□□□ -0.12
SDC3-204ENST00000487984 MYL3P08590 195 aa14.32□□□□□ -0.12
SDC3-204ENST00000487984 SLC35G1Q2M3R5 365 aa14.32□□□□□ -0.12
SDC3-204ENST00000487984 TMEM240Q5SV17 173 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms