RNA–Protein interactions for RNA: ENST00000487676.1

HLA-DQB1-209, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

Gene HLA-DQB1, Length 4,644 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-209ENST00000487676 MAGOHBQ96A72 148 aaKnown RBP16.78■□□□□ 0.28
HLA-DQB1-209ENST00000487676 CDC27P30260 824 aa16.78■□□□□ 0.28
HLA-DQB1-209ENST00000487676 POLR2FP61218 127 aaKnown RBP16.78■□□□□ 0.28
HLA-DQB1-209ENST00000487676 CUL4BQ13620 913 aa16.78■□□□□ 0.28
HLA-DQB1-209ENST00000487676 MCUR1Q96AQ8 359 aa16.78■□□□□ 0.28
HLA-DQB1-209ENST00000487676 ARL8AQ96BM9 186 aa16.78■□□□□ 0.28
HLA-DQB1-209ENST00000487676 CUEDC2Q9H467 287 aa16.78■□□□□ 0.28
HLA-DQB1-209ENST00000487676 TAF1DQ9H5J8 278 aaPredicted RBP16.78■□□□□ 0.28
HLA-DQB1-209ENST00000487676 TNKSO95271 1327 aa16.78■□□□□ 0.28
HLA-DQB1-209ENST00000487676 TMEM110-MUSTN1A8MSY1 372 aa16.77■□□□□ 0.28
HLA-DQB1-209ENST00000487676 MMEP08473 750 aa16.77■□□□□ 0.28
HLA-DQB1-209ENST00000487676 IKQ13123 557 aaPredicted RBP16.77■□□□□ 0.28
HLA-DQB1-209ENST00000487676 TNRQ92752 1358 aa16.77■□□□□ 0.28
HLA-DQB1-209ENST00000487676 UBN2Q6ZU65 1347 aa16.77■□□□□ 0.28
HLA-DQB1-209ENST00000487676 SYF2O95926 243 aaKnown RBP16.77■□□□□ 0.28
HLA-DQB1-209ENST00000487676 DYMQ7RTS9 669 aa16.77■□□□□ 0.28
HLA-DQB1-209ENST00000487676 UBL4BQ8N7F7 174 aa16.77■□□□□ 0.28
HLA-DQB1-209ENST00000487676 ZSWIM5Q9P217 1185 aa16.77■□□□□ 0.28
HLA-DQB1-209ENST00000487676 PRCPP42785 496 aa16.77■□□□□ 0.28
HLA-DQB1-209ENST00000487676 FYB2Q5VWT5 728 aa16.77■□□□□ 0.28
HLA-DQB1-209ENST00000487676 FAM89AQ96GI7 184 aa16.77■□□□□ 0.28
HLA-DQB1-209ENST00000487676 SMC6Q96SB8 1091 aa16.77■□□□□ 0.28
HLA-DQB1-209ENST00000487676 PRAMEF22A3QJZ6 481 aa16.77■□□□□ 0.27
HLA-DQB1-209ENST00000487676 ATF3P18847 181 aa16.77■□□□□ 0.27
HLA-DQB1-209ENST00000487676 ADORA1P30542 326 aa16.77■□□□□ 0.27
HLA-DQB1-209ENST00000487676 ZNF131P52739 623 aa16.77■□□□□ 0.27
HLA-DQB1-209ENST00000487676 PTPAQ15257 358 aa16.77■□□□□ 0.27
HLA-DQB1-209ENST00000487676 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.77■□□□□ 0.27
HLA-DQB1-209ENST00000487676 SEC16BQ96JE7 1060 aa16.77■□□□□ 0.27
HLA-DQB1-209ENST00000487676 PALLDQ8WX93 1383 aa16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 LRRC23Q53EV4 343 aaPredicted RBP16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 RASIP1Q5U651 963 aa16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 BLIDQ8IZY5 108 aa16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 PRPF38AQ8NAV1 312 aaKnown RBP16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 NEURL4Q96JN8 1562 aa16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 CCDC188H7C350 402 aa16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 GNA14O95837 355 aa16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 GCP02774 474 aa16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 H2AFZP0C0S5 128 aa16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 PDE6CP51160 858 aa16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 H2AFVQ71UI9 128 aa16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 C3orf20Q8ND61 904 aa16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 TMOD3Q9NYL9 352 aa16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 GRID2IPA4D2P6 1211 aa16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 DZIP1Q86YF9 867 aaKnown RBP16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 UHMK1Q8TAS1 419 aaKnown RBP16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 NEK9Q8TD19 979 aa16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 FMO2Q99518 471 aa16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 ABCC12Q96J65 1359 aa16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 TRIM49BA6NDI0 452 aa16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 TBCAO75347 108 aaKnown RBP16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 CHGBP05060 677 aa16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 ITGA6P23229 1130 aa16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 ADD2P35612 726 aa16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 PTPROQ16827 1216 aa16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 DCAF17Q5H9S7 520 aaPredicted RBP16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 NAIF1Q69YI7 327 aaPredicted RBP16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 ARHGAP24Q8N264 748 aa16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 MIEF2Q96C03 454 aa16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 RUNDC3BQ96NL0 473 aa16.76■□□□□ 0.27
HLA-DQB1-209ENST00000487676 METP08581 1390 aa16.75■□□□□ 0.27
HLA-DQB1-209ENST00000487676 TRIM37O94972 964 aa16.75■□□□□ 0.27
HLA-DQB1-209ENST00000487676 SCG2P13521 617 aa16.75■□□□□ 0.27
HLA-DQB1-209ENST00000487676 RPL13P26373 211 aaKnown RBP16.75■□□□□ 0.27
HLA-DQB1-209ENST00000487676 PUM3Q15397 648 aaKnown RBP16.75■□□□□ 0.27
HLA-DQB1-209ENST00000487676 ZNF365Q70YC5 407 aa16.75■□□□□ 0.27
HLA-DQB1-209ENST00000487676 NDST4Q9H3R1 872 aa16.75■□□□□ 0.27
HLA-DQB1-209ENST00000487676 SLC39A2Q9NP94 309 aa16.75■□□□□ 0.27
HLA-DQB1-209ENST00000487676 DAAM1Q9Y4D1 1078 aa16.75■□□□□ 0.27
HLA-DQB1-209ENST00000487676 MYO3AQ8NEV4 1616 aa16.75■□□□□ 0.27
HLA-DQB1-209ENST00000487676 ENO4A6NNW6 628 aa16.75■□□□□ 0.27
HLA-DQB1-209ENST00000487676 POTEJP0CG39 1038 aa16.75■□□□□ 0.27
HLA-DQB1-209ENST00000487676 LRIG3Q6UXM1 1119 aa16.75■□□□□ 0.27
HLA-DQB1-209ENST00000487676 DZIP3Q86Y13 1208 aaKnown RBP16.75■□□□□ 0.27
HLA-DQB1-209ENST00000487676 CCDC105Q8IYK2 499 aa16.75■□□□□ 0.27
HLA-DQB1-209ENST00000487676 VPS52Q8N1B4 723 aa16.75■□□□□ 0.27
HLA-DQB1-209ENST00000487676 CUL5Q93034 780 aa16.75■□□□□ 0.27
HLA-DQB1-209ENST00000487676 PUS3Q9BZE2 481 aaKnown RBP16.75■□□□□ 0.27
HLA-DQB1-209ENST00000487676 SCOCQ9UIL1 159 aa16.75■□□□□ 0.27
HLA-DQB1-209ENST00000487676 NCK2O43639 380 aa16.75■□□□□ 0.27
HLA-DQB1-209ENST00000487676 CCNT1O60563 726 aaKnown RBP16.75■□□□□ 0.27
HLA-DQB1-209ENST00000487676 STXBP4Q6ZWJ1 553 aa16.75■□□□□ 0.27
HLA-DQB1-209ENST00000487676 ILDR1Q86SU0 546 aaPredicted RBP16.75■□□□□ 0.27
HLA-DQB1-209ENST00000487676 AGXT2Q9BYV1 514 aa16.75■□□□□ 0.27
HLA-DQB1-209ENST00000487676 ATP2A1O14983 1001 aa16.74■□□□□ 0.27
HLA-DQB1-209ENST00000487676 POLE2P56282 527 aa16.74■□□□□ 0.27
HLA-DQB1-209ENST00000487676 ZKSCAN4Q969J2 545 aaPredicted RBP16.74■□□□□ 0.27
HLA-DQB1-209ENST00000487676 VCX3BQ9H321 246 aa16.74■□□□□ 0.27
HLA-DQB1-209ENST00000487676 VCX3AQ9NNX9 186 aa16.74■□□□□ 0.27
HLA-DQB1-209ENST00000487676 LARSQ9P2J5 1176 aaKnown RBP16.74■□□□□ 0.27
HLA-DQB1-209ENST00000487676 G3V3G9 751 aa16.74■□□□□ 0.27
HLA-DQB1-209ENST00000487676 TNFAIP3P21580 790 aa16.74■□□□□ 0.27
HLA-DQB1-209ENST00000487676 TXKP42681 527 aa16.74■□□□□ 0.27
HLA-DQB1-209ENST00000487676 GNPTABQ3T906 1256 aa16.74■□□□□ 0.27
HLA-DQB1-209ENST00000487676 SH2D4BQ5SQS7 431 aa16.74■□□□□ 0.27
HLA-DQB1-209ENST00000487676 DCAF8Q5TAQ9 597 aa16.74■□□□□ 0.27
HLA-DQB1-209ENST00000487676 CYB5R4Q7L1T6 521 aa16.74■□□□□ 0.27
HLA-DQB1-209ENST00000487676 SMCR8Q8TEV9 937 aaPredicted RBP16.74■□□□□ 0.27
HLA-DQB1-209ENST00000487676 RRP36Q96EU6 259 aaKnown RBP16.74■□□□□ 0.27
HLA-DQB1-209ENST00000487676 ZC3H13Q5T200 1668 aaKnown RBP16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms