RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 SGMS1Q86VZ5 419 aa13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 BLIDQ8IZY5 108 aa13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 CNBD1Q8NA66 436 aa13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 STAG1Q8WVM7 1258 aa13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 ZNF622Q969S3 477 aaKnown RBP eCLIP13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 CALML4Q96GE6 196 aa13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 FAM84BQ96KN1 310 aaPredicted RBP13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 MLXIPQ9HAP2 919 aa13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 KCND1Q9NSA2 647 aa13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 ERVV-1B6SEH8 477 aa13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 GUCY1A3Q02108 690 aa13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 CEP85LQ5SZL2 805 aa13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 PROCA1Q8NCQ7 364 aaPredicted RBP13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 HPS3Q969F9 1004 aa13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 NCAPGQ9BPX3 1015 aa13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 LRRC37A3O60309 1634 aa13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 ZNF804BA4D1E1 1349 aa13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 CDHR2Q9BYE9 1310 aa13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 CALML3P27482 149 aa13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 SCNN1DP51172 638 aa13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 IRAK1P51617 712 aa13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 CCDC40Q4G0X9 1142 aa13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 POTEDQ86YR6 584 aa13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 CLEC10AQ8IUN9 316 aa13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 SRBD1Q8N5C6 995 aaKnown RBP13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 SLC39A2Q9NP94 309 aa13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 SEPT11Q9NVA2 429 aaKnown RBP13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 RMND1Q9NWS8 449 aa13.69□□□□□ -0.22
SHROOM3-208ENST00000486758 KLRF2D3W0D1 207 aa13.68□□□□□ -0.22
SHROOM3-208ENST00000486758 MAGEA1P43355 309 aa13.68□□□□□ -0.22
SHROOM3-208ENST00000486758 RRAGAQ7L523 313 aa13.68□□□□□ -0.22
SHROOM3-208ENST00000486758 ZNF34Q8IZ26 560 aa13.68□□□□□ -0.22
SHROOM3-208ENST00000486758 UBLCP1Q8WVY7 318 aaPredicted RBP13.68□□□□□ -0.22
SHROOM3-208ENST00000486758 TBC1D31Q96DN5 1066 aa13.68□□□□□ -0.22
SHROOM3-208ENST00000486758 CCDC51Q96ER9 411 aa13.68□□□□□ -0.22
SHROOM3-208ENST00000486758 MAP3K14Q99558 947 aa13.68□□□□□ -0.22
SHROOM3-208ENST00000486758 LRRC1Q9BTT6 524 aa13.68□□□□□ -0.22
SHROOM3-208ENST00000486758 STK32BQ9NY57 414 aa13.68□□□□□ -0.22
SHROOM3-208ENST00000486758 TACC3Q9Y6A5 838 aa13.68□□□□□ -0.22
SHROOM3-208ENST00000486758 WNT7AO00755 349 aa13.68□□□□□ -0.22
SHROOM3-208ENST00000486758 KLK7P49862 253 aa13.68□□□□□ -0.22
SHROOM3-208ENST00000486758 NFRKBQ6P4R8 1299 aa13.68□□□□□ -0.22
SHROOM3-208ENST00000486758 TXNRD3Q86VQ6 643 aa13.68□□□□□ -0.22
SHROOM3-208ENST00000486758 MARCH10Q8NA82 808 aaPredicted RBP13.68□□□□□ -0.22
SHROOM3-208ENST00000486758 AGPAT5Q9NUQ2 364 aa13.68□□□□□ -0.22
SHROOM3-208ENST00000486758 CRYBG1Q9Y4K1 1723 aa13.68□□□□□ -0.22
SHROOM3-208ENST00000486758 PLEKHG2Q9H7P9 1386 aa13.68□□□□□ -0.22
SHROOM3-208ENST00000486758 BMP15O95972 392 aa13.68□□□□□ -0.22
SHROOM3-208ENST00000486758 RPN1P04843 607 aaKnown RBP13.68□□□□□ -0.22
SHROOM3-208ENST00000486758 CACNB1Q02641 598 aaPredicted RBP13.68□□□□□ -0.22
SHROOM3-208ENST00000486758 NNTQ13423 1086 aa13.68□□□□□ -0.22
SHROOM3-208ENST00000486758 TCP11X2Q5H9J9 407 aa13.68□□□□□ -0.22
SHROOM3-208ENST00000486758 CPLX4Q7Z7G2 160 aa13.68□□□□□ -0.22
SHROOM3-208ENST00000486758 RNF225M0QZC1 329 aaPredicted RBP13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 MYBL2P10244 700 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 TBX2Q13207 712 aaPredicted RBP13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 B4GALNT4Q76KP1 1039 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 KSR1Q8IVT5 923 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 NELFCDQ8IXH7 590 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 FERMT2Q96AC1 680 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 GSDMAQ96QA5 445 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 EPB41L5Q9HCM4 733 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 DCP1AQ9NPI6 582 aaPredicted RBP13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 NFU1Q9UMS0 254 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 LAMA4Q16363 1823 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 SMCO2A6NFE2 343 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 SEC24CP53992 1094 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 GTF2IP78347 998 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 UBE4AQ14139 1066 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 MFSD14BQ5SR56 506 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 SH3RF3Q8TEJ3 882 aaPredicted RBP13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 HDAC7Q8WUI4 952 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 HNRNPLLQ8WVV9 542 aaKnown RBP13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 PLA2G12BQ9BX93 195 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 SPON1Q9HCB6 807 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 TOPAZ1Q8N9V7 1692 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 LDHCP07864 332 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 ZNF18P17022 549 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 PRCPP42785 496 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 RASSF7Q02833 373 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 LRRC41Q15345 812 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 SLC51AQ86UW1 340 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 KIRREL3Q8IZU9 778 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 MSANTD4Q8NCY6 345 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 CABS1Q96KC9 395 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 EYA3Q99504 573 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 TUBGCP2Q9BSJ2 902 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 NHEJ1Q9H9Q4 299 aaPredicted RBP13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 BAIAP2L1Q9UHR4 511 aa13.67□□□□□ -0.22
SHROOM3-208ENST00000486758 ZNF76P36508 570 aa13.66□□□□□ -0.22
SHROOM3-208ENST00000486758 APBA1Q02410 837 aa13.66□□□□□ -0.22
SHROOM3-208ENST00000486758 PNMA8AQ86V59 439 aaPredicted RBP13.66□□□□□ -0.22
SHROOM3-208ENST00000486758 COA7Q96BR5 231 aa13.66□□□□□ -0.22
SHROOM3-208ENST00000486758 LACRTQ9GZZ8 138 aa13.66□□□□□ -0.22
SHROOM3-208ENST00000486758 CD248Q9HCU0 757 aa13.66□□□□□ -0.22
SHROOM3-208ENST00000486758 CLGNO14967 610 aa13.66□□□□□ -0.22
SHROOM3-208ENST00000486758 ACTN4O43707 911 aaKnown RBP13.66□□□□□ -0.22
SHROOM3-208ENST00000486758 CAMTA2O94983 1202 aa13.66□□□□□ -0.22
SHROOM3-208ENST00000486758 HNRNPH1P31943 449 aaKnown RBP13.66□□□□□ -0.22
SHROOM3-208ENST00000486758 TRIM14Q14142 442 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms