RNA–Protein interactions for RNA: ENST00000484112.5

CPSF4-213, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-213ENST00000484112 SNAP25P60880 206 aa11.74□□□□□ -0.53
CPSF4-213ENST00000484112 PSMC6P62333 389 aa11.74□□□□□ -0.53
CPSF4-213ENST00000484112 MRPS5P82675 430 aaKnown RBP11.74□□□□□ -0.53
CPSF4-213ENST00000484112 CTDSPL2Q05D32 466 aa11.74□□□□□ -0.53
CPSF4-213ENST00000484112 ITGA7Q13683 1181 aa11.74□□□□□ -0.53
CPSF4-213ENST00000484112 TLK2Q86UE8 772 aa11.74□□□□□ -0.53
CPSF4-213ENST00000484112 ESR2Q92731 530 aa11.74□□□□□ -0.53
CPSF4-213ENST00000484112 TRERF1Q96PN7 1200 aa11.74□□□□□ -0.53
CPSF4-213ENST00000484112 KRT23Q9C075 422 aa11.74□□□□□ -0.53
CPSF4-213ENST00000484112 TRPV6Q9H1D0 765 aa11.74□□□□□ -0.53
CPSF4-213ENST00000484112 RNF146Q9NTX7 359 aa11.74□□□□□ -0.53
CPSF4-213ENST00000484112 YBX2Q9Y2T7 364 aaKnown RBP11.74□□□□□ -0.53
CPSF4-213ENST00000484112 ASTN1O14525 1302 aa11.74□□□□□ -0.53
CPSF4-213ENST00000484112 ZBBXA8MT70 800 aa11.73□□□□□ -0.53
CPSF4-213ENST00000484112 CDC45O75419 566 aa11.73□□□□□ -0.53
CPSF4-213ENST00000484112 CABYRO75952 493 aa11.73□□□□□ -0.53
CPSF4-213ENST00000484112 SMPD1P17405 629 aa11.73□□□□□ -0.53
CPSF4-213ENST00000484112 MCCP23508 829 aa11.73□□□□□ -0.53
CPSF4-213ENST00000484112 SLC1A4P43007 532 aa11.73□□□□□ -0.53
CPSF4-213ENST00000484112 STAT2P52630 851 aa11.73□□□□□ -0.53
CPSF4-213ENST00000484112 FSCN1Q16658 493 aaKnown RBP11.73□□□□□ -0.53
CPSF4-213ENST00000484112 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.73□□□□□ -0.53
CPSF4-213ENST00000484112 FAM133AQ8N9E0 248 aa11.73□□□□□ -0.53
CPSF4-213ENST00000484112 MAP4K1Q92918 833 aa11.73□□□□□ -0.53
CPSF4-213ENST00000484112 UHRF1Q96T88 793 aaPredicted RBP11.73□□□□□ -0.53
CPSF4-213ENST00000484112 A1CFQ9NQ94 594 aaKnown RBP11.73□□□□□ -0.53
CPSF4-213ENST00000484112 PDGFCQ9NRA1 345 aa11.73□□□□□ -0.53
CPSF4-213ENST00000484112 MTMR7Q9Y216 660 aa11.73□□□□□ -0.53
CPSF4-213ENST00000484112 GNEQ9Y223 722 aaKnown RBP11.73□□□□□ -0.53
CPSF4-213ENST00000484112 GRIN2DO15399 1336 aa11.72□□□□□ -0.53
CPSF4-213ENST00000484112 B4GALT4O60513 344 aa11.72□□□□□ -0.53
CPSF4-213ENST00000484112 FDX1P10109 184 aa11.72□□□□□ -0.53
CPSF4-213ENST00000484112 MYOGP15173 224 aa11.72□□□□□ -0.53
CPSF4-213ENST00000484112 HAND2P61296 217 aa11.72□□□□□ -0.53
CPSF4-213ENST00000484112 SKIV2LQ15477 1246 aaKnown RBP11.72□□□□□ -0.53
CPSF4-213ENST00000484112 TMEM63BQ5T3F8 832 aa11.72□□□□□ -0.53
CPSF4-213ENST00000484112 PPP2R2DQ66LE6 453 aa11.72□□□□□ -0.53
CPSF4-213ENST00000484112 RCSD1Q6JBY9 416 aa11.72□□□□□ -0.53
CPSF4-213ENST00000484112 KCTD1Q719H9 257 aa11.72□□□□□ -0.53
CPSF4-213ENST00000484112 FAM160B2Q86V87 743 aa11.72□□□□□ -0.53
CPSF4-213ENST00000484112 IQCA1Q86XH1 822 aa11.72□□□□□ -0.53
CPSF4-213ENST00000484112 DGKHQ86XP1 1220 aa11.72□□□□□ -0.53
CPSF4-213ENST00000484112 FBXO16Q8IX29 292 aaPredicted RBP11.72□□□□□ -0.53
CPSF4-213ENST00000484112 RPUSD2Q8IZ73 545 aaKnown RBP11.72□□□□□ -0.53
CPSF4-213ENST00000484112 SLC43A3Q8NBI5 491 aa11.72□□□□□ -0.53
CPSF4-213ENST00000484112 CHURC1Q8WUH1 139 aa11.72□□□□□ -0.53
CPSF4-213ENST00000484112 SCLYQ96I15 445 aa11.72□□□□□ -0.53
CPSF4-213ENST00000484112 GMCL1Q96IK5 515 aa11.72□□□□□ -0.53
CPSF4-213ENST00000484112 ESYT1Q9BSJ8 1104 aa11.72□□□□□ -0.53
CPSF4-213ENST00000484112 NOC4LQ9BVI4 516 aaKnown RBP11.72□□□□□ -0.53
CPSF4-213ENST00000484112 IL25Q9H293 177 aa11.72□□□□□ -0.53
CPSF4-213ENST00000484112 TSPYL2Q9H2G4 693 aaPredicted RBP11.72□□□□□ -0.53
CPSF4-213ENST00000484112 TOMM22Q9NS69 142 aa11.72□□□□□ -0.53
CPSF4-213ENST00000484112 SLC4A7Q9Y6M7 1214 aa11.72□□□□□ -0.53
CPSF4-213ENST00000484112 VCANP13611 3396 aa11.72□□□□□ -0.53
CPSF4-213ENST00000484112 CDH23Q9H251 3354 aa11.72□□□□□ -0.53
CPSF4-213ENST00000484112 MCM3APO60318 1980 aa11.72□□□□□ -0.53
CPSF4-213ENST00000484112 ZNF536O15090 1300 aa11.71□□□□□ -0.53
CPSF4-213ENST00000484112 EPB41L2O43491 1005 aaKnown RBP11.71□□□□□ -0.53
CPSF4-213ENST00000484112 PLA2G6O60733 806 aa11.71□□□□□ -0.53
CPSF4-213ENST00000484112 NKX3-2P78367 333 aa11.71□□□□□ -0.53
CPSF4-213ENST00000484112 TRDNQ13061 729 aa11.71□□□□□ -0.53
CPSF4-213ENST00000484112 TKFCQ3LXA3 575 aa11.71□□□□□ -0.53
CPSF4-213ENST00000484112 MUM1L1Q5H9M0 696 aa11.71□□□□□ -0.53
CPSF4-213ENST00000484112 IQSEC1Q6DN90 963 aa11.71□□□□□ -0.53
CPSF4-213ENST00000484112 NSMFQ6X4W1 530 aa11.71□□□□□ -0.53
CPSF4-213ENST00000484112 TBC1D10CQ8IV04 446 aa11.71□□□□□ -0.53
CPSF4-213ENST00000484112 PURBQ96QR8 312 aaKnown RBP11.71□□□□□ -0.53
CPSF4-213ENST00000484112 WNT8AQ9H1J5 351 aa11.71□□□□□ -0.53
CPSF4-213ENST00000484112 IL17RBQ9NRM6 502 aa11.71□□□□□ -0.53
CPSF4-213ENST00000484112 STX8Q9UNK0 236 aa11.71□□□□□ -0.53
CPSF4-213ENST00000484112 EYSQ5T1H1 3165 aa11.71□□□□□ -0.54
CPSF4-213ENST00000484112 LAMA2P24043 3122 aaKnown RBP11.7□□□□□ -0.54
CPSF4-213ENST00000484112 TOP1P11387 765 aaKnown RBP11.7□□□□□ -0.54
CPSF4-213ENST00000484112 CYP2C9P11712 490 aa11.7□□□□□ -0.54
CPSF4-213ENST00000484112 RRP12Q5JTH9 1297 aaKnown RBP11.7□□□□□ -0.54
CPSF4-213ENST00000484112 TAPT1Q6NXT6 567 aa11.7□□□□□ -0.54
CPSF4-213ENST00000484112 DEFB128Q7Z7B8 93 aa11.7□□□□□ -0.54
CPSF4-213ENST00000484112 ANKS1AQ92625 1134 aa11.7□□□□□ -0.54
CPSF4-213ENST00000484112 NECAB3Q96P71 396 aaPredicted RBP11.7□□□□□ -0.54
CPSF4-213ENST00000484112 MTA3Q9BTC8 594 aa11.7□□□□□ -0.54
CPSF4-213ENST00000484112 CERS4Q9HA82 394 aa11.7□□□□□ -0.54
CPSF4-213ENST00000484112 MYH4Q9Y623 1939 aa11.7□□□□□ -0.54
CPSF4-213ENST00000484112 NEDD4P46934 1319 aa11.69□□□□□ -0.54
CPSF4-213ENST00000484112 RFXAPO00287 272 aa11.69□□□□□ -0.54
CPSF4-213ENST00000484112 EIF5BO60841 1220 aaKnown RBP11.69□□□□□ -0.54
CPSF4-213ENST00000484112 MYL3P08590 195 aa11.69□□□□□ -0.54
CPSF4-213ENST00000484112 CYP21A2P08686 494 aa11.69□□□□□ -0.54
CPSF4-213ENST00000484112 ATP2A2P16615 1042 aaKnown RBP11.69□□□□□ -0.54
CPSF4-213ENST00000484112 TFF2Q03403 129 aa11.69□□□□□ -0.54
CPSF4-213ENST00000484112 PTH1RQ03431 593 aa11.69□□□□□ -0.54
CPSF4-213ENST00000484112 RNF20Q5VTR2 975 aa11.69□□□□□ -0.54
CPSF4-213ENST00000484112 RASGRP2Q7LDG7 609 aa11.69□□□□□ -0.54
CPSF4-213ENST00000484112 DCAF4Q8WV16 495 aa11.69□□□□□ -0.54
CPSF4-213ENST00000484112 SEZ6LQ9BYH1 1024 aa11.69□□□□□ -0.54
CPSF4-213ENST00000484112 LSG1Q9H089 658 aaKnown RBP11.69□□□□□ -0.54
CPSF4-213ENST00000484112 ALDH8A1Q9H2A2 487 aaPredicted RBP11.69□□□□□ -0.54
CPSF4-213ENST00000484112 INCENPQ9NQS7 918 aa11.69□□□□□ -0.54
CPSF4-213ENST00000484112 TRMT13Q9NUP7 481 aaKnown RBP11.69□□□□□ -0.54
CPSF4-213ENST00000484112 CYP39A1Q9NYL5 469 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms