RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 IVNS1ABPQ9Y6Y0 642 aa14.04□□□□□ -0.16
SDC1-206ENST00000482879 MEIS2O14770 477 aa14.03□□□□□ -0.16
SDC1-206ENST00000482879 ADAMTS3O15072 1205 aa14.03□□□□□ -0.16
SDC1-206ENST00000482879 PDIA4P13667 645 aaKnown RBP14.03□□□□□ -0.16
SDC1-206ENST00000482879 HOXA13P31271 388 aaPredicted RBP14.03□□□□□ -0.16
SDC1-206ENST00000482879 KRT2P35908 639 aa14.03□□□□□ -0.16
SDC1-206ENST00000482879 HSD17B4P51659 736 aa14.03□□□□□ -0.16
SDC1-206ENST00000482879 RPS6P62753 249 aaKnown RBP14.03□□□□□ -0.16
SDC1-206ENST00000482879 LACTBP83111 547 aaPredicted RBP14.03□□□□□ -0.16
SDC1-206ENST00000482879 GNL2Q13823 731 aaKnown RBP14.03□□□□□ -0.16
SDC1-206ENST00000482879 BAATQ14032 418 aaPredicted RBP14.03□□□□□ -0.16
SDC1-206ENST00000482879 KCTD2Q14681 263 aa14.03□□□□□ -0.16
SDC1-206ENST00000482879 KIF22Q14807 665 aa14.03□□□□□ -0.16
SDC1-206ENST00000482879 NPY5RQ15761 445 aa14.03□□□□□ -0.16
SDC1-206ENST00000482879 MCTP1Q6DN14 999 aa14.03□□□□□ -0.16
SDC1-206ENST00000482879 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.03□□□□□ -0.16
SDC1-206ENST00000482879 DIS3L2Q8IYB7 885 aaKnown RBP14.03□□□□□ -0.16
SDC1-206ENST00000482879 DAGLBQ8NCG7 672 aa14.03□□□□□ -0.16
SDC1-206ENST00000482879 OXER1Q8TDS5 423 aa14.03□□□□□ -0.16
SDC1-206ENST00000482879 MAF1Q9H063 256 aa14.03□□□□□ -0.16
SDC1-206ENST00000482879 A1CFQ9NQ94 594 aaKnown RBP14.03□□□□□ -0.16
SDC1-206ENST00000482879 MAP3K20Q9NYL2 800 aaKnown RBP14.03□□□□□ -0.16
SDC1-206ENST00000482879 CYP39A1Q9NYL5 469 aa14.03□□□□□ -0.16
SDC1-206ENST00000482879 TSKSQ9UJT2 592 aa14.03□□□□□ -0.16
SDC1-206ENST00000482879 PFASO15067 1338 aa14.03□□□□□ -0.16
SDC1-206ENST00000482879 PLXNA1Q9UIW2 1896 aa14.03□□□□□ -0.16
SDC1-206ENST00000482879 MYH7BA7E2Y1 1941 aa14.02□□□□□ -0.16
SDC1-206ENST00000482879 BTBD18B2RXH4 712 aa14.02□□□□□ -0.17
SDC1-206ENST00000482879 PIK3CDO00329 1044 aa14.02□□□□□ -0.17
SDC1-206ENST00000482879 STRNO43815 780 aa14.02□□□□□ -0.17
SDC1-206ENST00000482879 PTPREP23469 700 aa14.02□□□□□ -0.17
SDC1-206ENST00000482879 PSMC4P43686 418 aa14.02□□□□□ -0.17
SDC1-206ENST00000482879 FCGRTP55899 365 aa14.02□□□□□ -0.17
SDC1-206ENST00000482879 GHRHRQ02643 423 aa14.02□□□□□ -0.17
SDC1-206ENST00000482879 JAKMIP3Q5VZ66 844 aa14.02□□□□□ -0.17
SDC1-206ENST00000482879 SLC30A10Q6XR72 485 aa14.02□□□□□ -0.17
SDC1-206ENST00000482879 FCHSD1Q86WN1 690 aa14.02□□□□□ -0.17
SDC1-206ENST00000482879 TEX2Q8IWB9 1127 aa14.02□□□□□ -0.17
SDC1-206ENST00000482879 REXO1Q8N1G1 1221 aaKnown RBP14.02□□□□□ -0.17
SDC1-206ENST00000482879 JMYQ8N9B5 988 aa14.02□□□□□ -0.17
SDC1-206ENST00000482879 RASGRP4Q8TDF6 673 aa14.02□□□□□ -0.17
SDC1-206ENST00000482879 SYTL5Q8TDW5 730 aaPredicted RBP14.02□□□□□ -0.17
SDC1-206ENST00000482879 TMEM260Q9NX78 707 aa14.02□□□□□ -0.17
SDC1-206ENST00000482879 PCDHA6Q9UN73 950 aa14.02□□□□□ -0.17
SDC1-206ENST00000482879 MTMR6Q9Y217 621 aa14.02□□□□□ -0.17
SDC1-206ENST00000482879 PCDHA8Q9Y5H6 950 aa14.02□□□□□ -0.17
SDC1-206ENST00000482879 LCTP09848 1927 aa14.02□□□□□ -0.17
SDC1-206ENST00000482879 ZSWIM8A7E2V4 1837 aa14.01□□□□□ -0.17
SDC1-206ENST00000482879 SLC15A5A6NIM6 579 aa14.01□□□□□ -0.17
SDC1-206ENST00000482879 POTEB2H3BUK9 544 aa14.01□□□□□ -0.17
SDC1-206ENST00000482879 TNPO2O14787 897 aaKnown RBP14.01□□□□□ -0.17
SDC1-206ENST00000482879 FKTNO75072 461 aa14.01□□□□□ -0.17
SDC1-206ENST00000482879 CTGFP29279 349 aa14.01□□□□□ -0.17
SDC1-206ENST00000482879 CLK2P49760 499 aaKnown RBP14.01□□□□□ -0.17
SDC1-206ENST00000482879 NR5A1Q13285 461 aa14.01□□□□□ -0.17
SDC1-206ENST00000482879 NOM1Q5C9Z4 860 aaKnown RBP14.01□□□□□ -0.17
SDC1-206ENST00000482879 ABRAQ8N0Z2 381 aa14.01□□□□□ -0.17
SDC1-206ENST00000482879 ARHGAP39Q9C0H5 1083 aa14.01□□□□□ -0.17
SDC1-206ENST00000482879 CASP8AP2Q9UKL3 1982 aa14.01□□□□□ -0.17
SDC1-206ENST00000482879 SPDYE3A6NKU9 549 aa14□□□□□ -0.17
SDC1-206ENST00000482879 M0R2N6 131 aa14□□□□□ -0.17
SDC1-206ENST00000482879 FOSP01100 380 aaPredicted RBP14□□□□□ -0.17
SDC1-206ENST00000482879 PGK2P07205 417 aa14□□□□□ -0.17
SDC1-206ENST00000482879 ADORA2AP29274 412 aa14□□□□□ -0.17
SDC1-206ENST00000482879 DDIT3P35638 169 aa14□□□□□ -0.17
SDC1-206ENST00000482879 CNTN2Q02246 1040 aa14□□□□□ -0.17
SDC1-206ENST00000482879 AP3B2Q13367 1082 aa14□□□□□ -0.17
SDC1-206ENST00000482879 PKP1Q13835 747 aa14□□□□□ -0.17
SDC1-206ENST00000482879 GRB14Q14449 540 aa14□□□□□ -0.17
SDC1-206ENST00000482879 FOXD4L5Q5VV16 416 aaPredicted RBP14□□□□□ -0.17
SDC1-206ENST00000482879 MCTP2Q6DN12 878 aa14□□□□□ -0.17
SDC1-206ENST00000482879 KRT25Q7Z3Z0 450 aa14□□□□□ -0.17
SDC1-206ENST00000482879 CD99L2Q8TCZ2 262 aa14□□□□□ -0.17
SDC1-206ENST00000482879 ZNF296Q8WUU4 475 aaPredicted RBP14□□□□□ -0.17
SDC1-206ENST00000482879 FOXD4L4Q8WXT5 416 aaPredicted RBP14□□□□□ -0.17
SDC1-206ENST00000482879 ERO1AQ96HE7 468 aa14□□□□□ -0.17
SDC1-206ENST00000482879 PGBD1Q96JS3 809 aa14□□□□□ -0.17
SDC1-206ENST00000482879 TRIM47Q96LD4 638 aa14□□□□□ -0.17
SDC1-206ENST00000482879 PURBQ96QR8 312 aaKnown RBP14□□□□□ -0.17
SDC1-206ENST00000482879 TAAR1Q96RJ0 339 aa14□□□□□ -0.17
SDC1-206ENST00000482879 FOXP1Q9H334 677 aaPredicted RBP14□□□□□ -0.17
SDC1-206ENST00000482879 COL20A1Q9P218 1284 aa14□□□□□ -0.17
SDC1-206ENST00000482879 MCM3APO60318 1980 aa14□□□□□ -0.17
SDC1-206ENST00000482879 DNAJC25-GNG10A0A024R161 153 aa13.99□□□□□ -0.17
SDC1-206ENST00000482879 CCDC194A0A1B0GVG4 234 aa13.99□□□□□ -0.17
SDC1-206ENST00000482879 KIF28PB7ZC32 967 aa13.99□□□□□ -0.17
SDC1-206ENST00000482879 COBLO75128 1261 aa13.99□□□□□ -0.17
SDC1-206ENST00000482879 ZSCAN22P10073 491 aaPredicted RBP13.99□□□□□ -0.17
SDC1-206ENST00000482879 U2AF2P26368 475 aaKnown RBP eCLIP13.99□□□□□ -0.17
SDC1-206ENST00000482879 NUCB2P80303 420 aa13.99□□□□□ -0.17
SDC1-206ENST00000482879 MORN1Q5T089 497 aa13.99□□□□□ -0.17
SDC1-206ENST00000482879 DPP9Q86TI2 863 aa13.99□□□□□ -0.17
SDC1-206ENST00000482879 FERMT3Q86UX7 667 aa13.99□□□□□ -0.17
SDC1-206ENST00000482879 TNFRSF25Q93038 417 aa13.99□□□□□ -0.17
SDC1-206ENST00000482879 RMDN3Q96TC7 470 aa13.99□□□□□ -0.17
SDC1-206ENST00000482879 NUDT12Q9BQG2 462 aa13.99□□□□□ -0.17
SDC1-206ENST00000482879 ANO3Q9BYT9 981 aa13.99□□□□□ -0.17
SDC1-206ENST00000482879 EHMT1Q9H9B1 1298 aa13.99□□□□□ -0.17
SDC1-206ENST00000482879 BRD1O95696 1058 aa13.98□□□□□ -0.17
SDC1-206ENST00000482879 MAP2K5Q13163 448 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms