RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 FGD1P98174 961 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 SCRN1Q12765 414 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 TRIM32Q13049 653 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 CDC37Q16543 378 aaPredicted RBP8.12□□□□□ -1.11
LIMD1-204ENST00000474665 RTN1Q16799 776 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 QRICH1Q2TAL8 776 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 CCDC174Q6PII3 467 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 NOL8Q76FK4 1167 aaKnown RBP8.12□□□□□ -1.11
LIMD1-204ENST00000474665 RIOX2Q8IUF8 465 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 CPXCR1Q8N123 301 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 CCDC82Q8N4S0 544 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 NECAB1Q8N987 351 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 IL27Q8NEV9 243 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 GTF3C2Q8WUA4 911 aaPredicted RBP8.12□□□□□ -1.11
LIMD1-204ENST00000474665 CLEC4DQ8WXI8 215 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 USP6NLQ92738 828 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 PIGSQ96S52 555 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 SPZ1Q9BXG8 430 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 VAT1LQ9HCJ6 419 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 ISY1Q9ULR0 285 aaKnown RBP8.12□□□□□ -1.11
LIMD1-204ENST00000474665 PLXNA1Q9UIW2 1896 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 MUC6Q6W4X9 2439 aa8.12□□□□□ -1.11
LIMD1-204ENST00000474665 ZBTB5O15062 677 aa8.11□□□□□ -1.11
LIMD1-204ENST00000474665 ZBED4O75132 1171 aa8.11□□□□□ -1.11
LIMD1-204ENST00000474665 IGHA2P01877 340 aa8.11□□□□□ -1.11
LIMD1-204ENST00000474665 ICAM1P05362 532 aa8.11□□□□□ -1.11
LIMD1-204ENST00000474665 SMARCA1P28370 1054 aa8.11□□□□□ -1.11
LIMD1-204ENST00000474665 KIF5BP33176 963 aa8.11□□□□□ -1.11
LIMD1-204ENST00000474665 METAP2P50579 478 aaKnown RBP eCLIP8.11□□□□□ -1.11
LIMD1-204ENST00000474665 OAZ1P54368 228 aa8.11□□□□□ -1.11
LIMD1-204ENST00000474665 IKQ13123 557 aaPredicted RBP8.11□□□□□ -1.11
LIMD1-204ENST00000474665 STK3Q13188 491 aa8.11□□□□□ -1.11
LIMD1-204ENST00000474665 IRF5Q13568 498 aa8.11□□□□□ -1.11
LIMD1-204ENST00000474665 PLS1Q14651 629 aa8.11□□□□□ -1.11
LIMD1-204ENST00000474665 CCDC85BQ15834 202 aaPredicted RBP8.11□□□□□ -1.11
LIMD1-204ENST00000474665 PKN1Q16512 942 aa8.11□□□□□ -1.11
LIMD1-204ENST00000474665 MUM1L1Q5H9M0 696 aa8.11□□□□□ -1.11
LIMD1-204ENST00000474665 MORN1Q5T089 497 aa8.11□□□□□ -1.11
LIMD1-204ENST00000474665 SNRNP48Q6IEG0 339 aaKnown RBP8.11□□□□□ -1.11
LIMD1-204ENST00000474665 TYW1BQ6NUM6 668 aa8.11□□□□□ -1.11
LIMD1-204ENST00000474665 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.11□□□□□ -1.11
LIMD1-204ENST00000474665 GPR142Q7Z601 462 aa8.11□□□□□ -1.11
LIMD1-204ENST00000474665 SHCBP1Q8NEM2 672 aa8.11□□□□□ -1.11
LIMD1-204ENST00000474665 CTCFLQ8NI51 663 aaPredicted RBP8.11□□□□□ -1.11
LIMD1-204ENST00000474665 PIBF1Q8WXW3 757 aa8.11□□□□□ -1.11
LIMD1-204ENST00000474665 TBC1D5Q92609 795 aa8.11□□□□□ -1.11
LIMD1-204ENST00000474665 FGD4Q96M96 766 aa8.11□□□□□ -1.11
LIMD1-204ENST00000474665 TEX13BQ9BXU2 312 aa8.11□□□□□ -1.11
LIMD1-204ENST00000474665 UPF2Q9HAU5 1272 aaKnown RBP8.11□□□□□ -1.11
LIMD1-204ENST00000474665 C11orf16Q9NQ32 467 aa8.11□□□□□ -1.11
LIMD1-204ENST00000474665 OGDHLQ9ULD0 1010 aa8.11□□□□□ -1.11
LIMD1-204ENST00000474665 PNMA6FA0A0J9YX94 578 aa8.1□□□□□ -1.11
LIMD1-204ENST00000474665 NFIBO00712 420 aa8.1□□□□□ -1.11
LIMD1-204ENST00000474665 TNPO2O14787 897 aaKnown RBP8.1□□□□□ -1.11
LIMD1-204ENST00000474665 ADAMTS3O15072 1205 aa8.1□□□□□ -1.11
LIMD1-204ENST00000474665 COBLO75128 1261 aa8.1□□□□□ -1.11
LIMD1-204ENST00000474665 FDX1P10109 184 aa8.1□□□□□ -1.11
LIMD1-204ENST00000474665 COL6A1P12109 1028 aa8.1□□□□□ -1.11
LIMD1-204ENST00000474665 BMP1P13497 986 aa8.1□□□□□ -1.11
LIMD1-204ENST00000474665 FDPSP14324 419 aaKnown RBP8.1□□□□□ -1.11
LIMD1-204ENST00000474665 IFNAR1P17181 557 aa8.1□□□□□ -1.11
LIMD1-204ENST00000474665 GNAQP50148 359 aa8.1□□□□□ -1.11
LIMD1-204ENST00000474665 SYNE3Q6ZMZ3 975 aa8.1□□□□□ -1.11
LIMD1-204ENST00000474665 PHKBQ93100 1093 aa8.1□□□□□ -1.11
LIMD1-204ENST00000474665 GTF3C6Q969F1 213 aa8.1□□□□□ -1.11
LIMD1-204ENST00000474665 LZTS2Q9BRK4 669 aa8.1□□□□□ -1.11
LIMD1-204ENST00000474665 HMX1Q9NP08 348 aaPredicted RBP8.1□□□□□ -1.11
LIMD1-204ENST00000474665 HOMER2Q9NSB8 354 aa8.1□□□□□ -1.11
LIMD1-204ENST00000474665 RBM28Q9NW13 759 aaKnown RBP8.1□□□□□ -1.11
LIMD1-204ENST00000474665 CCPG1Q9ULG6 757 aa8.1□□□□□ -1.11
LIMD1-204ENST00000474665 NAP1L2Q9ULW6 460 aaPredicted RBP8.1□□□□□ -1.11
LIMD1-204ENST00000474665 LIMCH1Q9UPQ0 1083 aa8.1□□□□□ -1.11
LIMD1-204ENST00000474665 V9GY48 417 aaPredicted RBP8.1□□□□□ -1.11
LIMD1-204ENST00000474665 ZNF236Q9UL36 1845 aa8.1□□□□□ -1.11
LIMD1-204ENST00000474665 TCF20Q9UGU0 1960 aaKnown RBP8.1□□□□□ -1.11
LIMD1-204ENST00000474665 ASTN1O14525 1302 aa8.09□□□□□ -1.11
LIMD1-204ENST00000474665 NCOR1O75376 2440 aa8.09□□□□□ -1.11
LIMD1-204ENST00000474665 DNAJC25-GNG10A0A024R161 153 aa8.09□□□□□ -1.11
LIMD1-204ENST00000474665 SLC25A27O95847 323 aa8.09□□□□□ -1.11
LIMD1-204ENST00000474665 ALAS1P13196 640 aa8.09□□□□□ -1.11
LIMD1-204ENST00000474665 PTPREP23469 700 aa8.09□□□□□ -1.11
LIMD1-204ENST00000474665 MAPK4P31152 587 aa8.09□□□□□ -1.11
LIMD1-204ENST00000474665 SLC4A3P48751 1232 aa8.09□□□□□ -1.11
LIMD1-204ENST00000474665 CCNA1P78396 465 aa8.09□□□□□ -1.11
LIMD1-204ENST00000474665 GRB14Q14449 540 aa8.09□□□□□ -1.11
LIMD1-204ENST00000474665 PPP2R5BQ15173 497 aa8.09□□□□□ -1.11
LIMD1-204ENST00000474665 ANKRD1Q15327 319 aa8.09□□□□□ -1.11
LIMD1-204ENST00000474665 USH1GQ495M9 461 aa8.09□□□□□ -1.11
LIMD1-204ENST00000474665 PLEKHH3Q7Z736 793 aa8.09□□□□□ -1.11
LIMD1-204ENST00000474665 NCAPG2Q86XI2 1143 aa8.09□□□□□ -1.11
LIMD1-204ENST00000474665 HOMER1Q86YM7 354 aa8.09□□□□□ -1.11
LIMD1-204ENST00000474665 COA7Q96BR5 231 aa8.09□□□□□ -1.11
LIMD1-204ENST00000474665 AIFM3Q96NN9 605 aa8.09□□□□□ -1.11
LIMD1-204ENST00000474665 TRERF1Q96PN7 1200 aa8.09□□□□□ -1.11
LIMD1-204ENST00000474665 PURBQ96QR8 312 aaKnown RBP8.09□□□□□ -1.11
LIMD1-204ENST00000474665 MROH8Q9H579 483 aa8.09□□□□□ -1.11
LIMD1-204ENST00000474665 A1CFQ9NQ94 594 aaKnown RBP8.09□□□□□ -1.11
LIMD1-204ENST00000474665 RNF146Q9NTX7 359 aa8.09□□□□□ -1.11
LIMD1-204ENST00000474665 COL20A1Q9P218 1284 aa8.09□□□□□ -1.11
LIMD1-204ENST00000474665 DDX49Q9Y6V7 483 aaKnown RBP8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms