RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 STOX1Q6ZVD7 989 aa21.73■■□□□ 1.07
COL7A1-209ENST00000474432 TLK2Q86UE8 772 aa21.73■■□□□ 1.07
COL7A1-209ENST00000474432 STAG2Q8N3U4 1231 aa21.73■■□□□ 1.07
COL7A1-209ENST00000474432 RUFY2Q8WXA3 655 aa21.73■■□□□ 1.07
COL7A1-209ENST00000474432 GLT1D1Q96MS3 346 aa21.73■■□□□ 1.07
COL7A1-209ENST00000474432 JMJD4Q9H9V9 463 aa21.73■■□□□ 1.07
COL7A1-209ENST00000474432 ADD3Q9UEY8 706 aaKnown RBP21.73■■□□□ 1.07
COL7A1-209ENST00000474432 TBX21Q9UL17 535 aa21.73■■□□□ 1.07
COL7A1-209ENST00000474432 DYNC1LI2O43237 492 aaPredicted RBP21.72■■□□□ 1.07
COL7A1-209ENST00000474432 SLC35G1Q2M3R5 365 aa21.72■■□□□ 1.07
COL7A1-209ENST00000474432 USH1GQ495M9 461 aa21.72■■□□□ 1.07
COL7A1-209ENST00000474432 Q7L0L9 218 aa21.72■■□□□ 1.07
COL7A1-209ENST00000474432 RGS22Q8NE09 1264 aa21.72■■□□□ 1.07
COL7A1-209ENST00000474432 SENP2Q9HC62 589 aa21.72■■□□□ 1.07
COL7A1-209ENST00000474432 Q9Y3F1 56 aa21.72■■□□□ 1.07
COL7A1-209ENST00000474432 GRIN2DO15399 1336 aa21.72■■□□□ 1.07
COL7A1-209ENST00000474432 LAMA2P24043 3122 aaKnown RBP21.71■■□□□ 1.07
COL7A1-209ENST00000474432 ARVCFO00192 962 aa21.71■■□□□ 1.07
COL7A1-209ENST00000474432 PARP1P09874 1014 aaKnown RBP21.71■■□□□ 1.07
COL7A1-209ENST00000474432 QRICH1Q2TAL8 776 aa21.71■■□□□ 1.07
COL7A1-209ENST00000474432 CXCL17Q6UXB2 119 aa21.71■■□□□ 1.07
COL7A1-209ENST00000474432 KIAA1211Q6ZU35 1233 aa21.71■■□□□ 1.07
COL7A1-209ENST00000474432 SLC43A3Q8NBI5 491 aa21.71■■□□□ 1.07
COL7A1-209ENST00000474432 UBAC1Q9BSL1 405 aa21.71■■□□□ 1.07
COL7A1-209ENST00000474432 TMEM39AQ9NV64 488 aa21.71■■□□□ 1.07
COL7A1-209ENST00000474432 A0A0U1RQG5 324 aaPredicted RBP21.7■■□□□ 1.06
COL7A1-209ENST00000474432 DCDC2CA8MYV0 355 aa21.7■■□□□ 1.06
COL7A1-209ENST00000474432 FSCN1Q16658 493 aaKnown RBP21.7■■□□□ 1.06
COL7A1-209ENST00000474432 DUSP28Q4G0W2 176 aa21.7■■□□□ 1.06
COL7A1-209ENST00000474432 IFIT1BQ5T764 474 aaKnown RBP21.7■■□□□ 1.06
COL7A1-209ENST00000474432 NOL8Q76FK4 1167 aaKnown RBP21.7■■□□□ 1.06
COL7A1-209ENST00000474432 FAM126BQ8IXS8 530 aa21.7■■□□□ 1.06
COL7A1-209ENST00000474432 MAP4K1Q92918 833 aa21.7■■□□□ 1.06
COL7A1-209ENST00000474432 MTMR8Q96EF0 704 aa21.7■■□□□ 1.06
COL7A1-209ENST00000474432 COL20A1Q9P218 1284 aa21.7■■□□□ 1.06
COL7A1-209ENST00000474432 MAD2L2Q9UI95 211 aa21.7■■□□□ 1.06
COL7A1-209ENST00000474432 U3KPZ7 1027 aaPredicted RBP21.7■■□□□ 1.06
COL7A1-209ENST00000474432 PALM3A6NDB9 673 aaPredicted RBP21.69■■□□□ 1.06
COL7A1-209ENST00000474432 E7EWF7 191 aa21.69■■□□□ 1.06
COL7A1-209ENST00000474432 RAG1P15918 1043 aa21.69■■□□□ 1.06
COL7A1-209ENST00000474432 DEFB123Q8N688 67 aa21.69■■□□□ 1.06
COL7A1-209ENST00000474432 DNERQ8NFT8 737 aa21.69■■□□□ 1.06
COL7A1-209ENST00000474432 AP5M1Q9H0R1 490 aa21.69■■□□□ 1.06
COL7A1-209ENST00000474432 OPLAHO14841 1288 aa21.68■■□□□ 1.06
COL7A1-209ENST00000474432 PPP1R11O60927 126 aaPredicted RBP21.68■■□□□ 1.06
COL7A1-209ENST00000474432 CD4P01730 458 aa21.68■■□□□ 1.06
COL7A1-209ENST00000474432 ANTXR2P58335 489 aa21.68■■□□□ 1.06
COL7A1-209ENST00000474432 SKAP1Q86WV1 359 aa21.68■■□□□ 1.06
COL7A1-209ENST00000474432 SYTL5Q8TDW5 730 aaPredicted RBP21.68■■□□□ 1.06
COL7A1-209ENST00000474432 WDR11Q9BZH6 1224 aa21.68■■□□□ 1.06
COL7A1-209ENST00000474432 VAT1LQ9HCJ6 419 aa21.68■■□□□ 1.06
COL7A1-209ENST00000474432 MTMR10Q9NXD2 777 aa21.68■■□□□ 1.06
COL7A1-209ENST00000474432 ABCB11O95342 1321 aa21.68■■□□□ 1.06
COL7A1-209ENST00000474432 BAZ2BQ9UIF8 2168 aaKnown RBP21.68■■□□□ 1.06
COL7A1-209ENST00000474432 MROH7Q68CQ1 1323 aa21.67■■□□□ 1.06
COL7A1-209ENST00000474432 KLRF2D3W0D1 207 aa21.67■■□□□ 1.06
COL7A1-209ENST00000474432 TIMP1P01033 207 aa21.67■■□□□ 1.06
COL7A1-209ENST00000474432 COL9A3Q14050 684 aaPredicted RBP21.67■■□□□ 1.06
COL7A1-209ENST00000474432 VTI1AQ96AJ9 217 aa21.67■■□□□ 1.06
COL7A1-209ENST00000474432 TAAR1Q96RJ0 339 aa21.67■■□□□ 1.06
COL7A1-209ENST00000474432 MAF1Q9H063 256 aa21.67■■□□□ 1.06
COL7A1-209ENST00000474432 COL6A3P12111 3177 aa21.66■■□□□ 1.06
COL7A1-209ENST00000474432 CABYRO75952 493 aa21.66■■□□□ 1.06
COL7A1-209ENST00000474432 CHST3Q7LGC8 479 aa21.66■■□□□ 1.06
COL7A1-209ENST00000474432 FBXO11Q86XK2 927 aa21.66■■□□□ 1.06
COL7A1-209ENST00000474432 MB21D2Q8IYB1 491 aaPredicted RBP21.66■■□□□ 1.06
COL7A1-209ENST00000474432 RBM8AQ9Y5S9 174 aaKnown RBP21.66■■□□□ 1.06
COL7A1-209ENST00000474432 KIAA1217Q5T5P2 1943 aa21.65■■□□□ 1.06
COL7A1-209ENST00000474432 ARIH2O95376 493 aa21.65■■□□□ 1.06
COL7A1-209ENST00000474432 PSMC6P62333 389 aa21.65■■□□□ 1.06
COL7A1-209ENST00000474432 GHRHRQ02643 423 aa21.65■■□□□ 1.06
COL7A1-209ENST00000474432 FPGSQ05932 587 aa21.65■■□□□ 1.06
COL7A1-209ENST00000474432 PDE4DQ08499 809 aa21.65■■□□□ 1.06
COL7A1-209ENST00000474432 TROAPQ12815 778 aa21.65■■□□□ 1.06
COL7A1-209ENST00000474432 TRDNQ13061 729 aa21.65■■□□□ 1.06
COL7A1-209ENST00000474432 ITGA7Q13683 1181 aa21.65■■□□□ 1.06
COL7A1-209ENST00000474432 GRM4Q14833 912 aa21.65■■□□□ 1.06
COL7A1-209ENST00000474432 FAM109BQ6ICB4 259 aaPredicted RBP21.65■■□□□ 1.06
COL7A1-209ENST00000474432 C16orf59Q7L2K0 433 aa21.65■■□□□ 1.06
COL7A1-209ENST00000474432 NCOA7Q8NI08 942 aa21.65■■□□□ 1.06
COL7A1-209ENST00000474432 IGDCC4Q8TDY8 1250 aa21.65■■□□□ 1.06
COL7A1-209ENST00000474432 COPS5Q92905 334 aa21.65■■□□□ 1.06
COL7A1-209ENST00000474432 LSG1Q9H089 658 aaKnown RBP21.65■■□□□ 1.06
COL7A1-209ENST00000474432 IFIT3O14879 490 aaKnown RBP21.64■■□□□ 1.05
COL7A1-209ENST00000474432 CYTH3O43739 400 aa21.64■■□□□ 1.05
COL7A1-209ENST00000474432 MFSD5Q6N075 450 aa21.64■■□□□ 1.05
COL7A1-209ENST00000474432 CCDC62Q6P9F0 684 aa21.64■■□□□ 1.05
COL7A1-209ENST00000474432 RIOX1Q9H6W3 641 aa21.64■■□□□ 1.05
COL7A1-209ENST00000474432 SCN10AQ9Y5Y9 1956 aa21.64■■□□□ 1.05
COL7A1-209ENST00000474432 DHX16O60231 1041 aaKnown RBP21.63■■□□□ 1.05
COL7A1-209ENST00000474432 PURAQ00577 322 aaKnown RBP21.63■■□□□ 1.05
COL7A1-209ENST00000474432 SCFD2Q8WU76 684 aa21.63■■□□□ 1.05
COL7A1-209ENST00000474432 ESYT1Q9BSJ8 1104 aa21.63■■□□□ 1.05
COL7A1-209ENST00000474432 GPHNQ9NQX3 736 aaPredicted RBP21.63■■□□□ 1.05
COL7A1-209ENST00000474432 MRPL11Q9Y3B7 192 aaKnown RBP21.63■■□□□ 1.05
COL7A1-209ENST00000474432 ZBTB5O15062 677 aa21.62■■□□□ 1.05
COL7A1-209ENST00000474432 ZEB2O60315 1214 aa21.62■■□□□ 1.05
COL7A1-209ENST00000474432 HSD17B4P51659 736 aa21.62■■□□□ 1.05
COL7A1-209ENST00000474432 MCF2L2Q86YR7 1114 aa21.62■■□□□ 1.05
COL7A1-209ENST00000474432 AMNQ9BXJ7 453 aa21.62■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms