RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 ACTN1P12814 892 aa21.91■■□□□ 1.1
SHH-205ENST00000472308 KIAA1211Q6ZU35 1233 aa21.91■■□□□ 1.1
SHH-205ENST00000472308 FAM160B2Q86V87 743 aa21.91■■□□□ 1.1
SHH-205ENST00000472308 PPP1R13LQ8WUF5 828 aa21.91■■□□□ 1.1
SHH-205ENST00000472308 STAG1Q8WVM7 1258 aa21.91■■□□□ 1.1
SHH-205ENST00000472308 CHMP4CQ96CF2 233 aa21.91■■□□□ 1.1
SHH-205ENST00000472308 HMMRO75330 724 aa21.9■■□□□ 1.1
SHH-205ENST00000472308 RFC2P35250 354 aa21.9■■□□□ 1.1
SHH-205ENST00000472308 RASGRP2Q7LDG7 609 aa21.9■■□□□ 1.1
SHH-205ENST00000472308 NEDD1Q8NHV4 660 aa21.9■■□□□ 1.1
SHH-205ENST00000472308 POLR3EQ9NVU0 708 aa21.9■■□□□ 1.1
SHH-205ENST00000472308 ISY1Q9ULR0 285 aaKnown RBP21.9■■□□□ 1.1
SHH-205ENST00000472308 SCN10AQ9Y5Y9 1956 aa21.9■■□□□ 1.1
SHH-205ENST00000472308 PTPRSQ13332 1948 aa21.9■■□□□ 1.1
SHH-205ENST00000472308 LCHNA4D1U4 455 aa21.89■■□□□ 1.09
SHH-205ENST00000472308 PI4K2BG5E9Z4 385 aa21.89■■□□□ 1.09
SHH-205ENST00000472308 PITPNM1O00562 1244 aa21.89■■□□□ 1.09
SHH-205ENST00000472308 IQCF3P0C7M6 154 aa21.89■■□□□ 1.09
SHH-205ENST00000472308 CHURC1Q8WUH1 139 aa21.89■■□□□ 1.09
SHH-205ENST00000472308 GPAA1O43292 621 aa21.88■■□□□ 1.09
SHH-205ENST00000472308 PLA2G6O60733 806 aa21.88■■□□□ 1.09
SHH-205ENST00000472308 MYL3P08590 195 aa21.88■■□□□ 1.09
SHH-205ENST00000472308 MCCP23508 829 aa21.88■■□□□ 1.09
SHH-205ENST00000472308 SLC1A4P43007 532 aa21.88■■□□□ 1.09
SHH-205ENST00000472308 TDO2P48775 406 aa21.88■■□□□ 1.09
SHH-205ENST00000472308 IKQ13123 557 aaPredicted RBP21.88■■□□□ 1.09
SHH-205ENST00000472308 NBPF20Q3BBV1 942 aa21.88■■□□□ 1.09
SHH-205ENST00000472308 APPBP2Q92624 585 aa21.88■■□□□ 1.09
SHH-205ENST00000472308 MTG1Q9BT17 334 aaPredicted RBP21.88■■□□□ 1.09
SHH-205ENST00000472308 WDR11Q9BZH6 1224 aa21.88■■□□□ 1.09
SHH-205ENST00000472308 ZNF287Q9HBT7 754 aa21.88■■□□□ 1.09
SHH-205ENST00000472308 ZBTB40Q9NUA8 1239 aa21.88■■□□□ 1.09
SHH-205ENST00000472308 TET1Q8NFU7 2136 aa21.88■■□□□ 1.09
SHH-205ENST00000472308 M0R2C6 588 aa21.87■■□□□ 1.09
SHH-205ENST00000472308 TSPY3P0CV98 308 aa21.87■■□□□ 1.09
SHH-205ENST00000472308 TSPY8P0CW00 308 aa21.87■■□□□ 1.09
SHH-205ENST00000472308 CPT1AP50416 773 aa21.87■■□□□ 1.09
SHH-205ENST00000472308 FAM47CQ5HY64 1035 aa21.87■■□□□ 1.09
SHH-205ENST00000472308 NSMFQ6X4W1 530 aa21.87■■□□□ 1.09
SHH-205ENST00000472308 KCTD1Q719H9 257 aa21.87■■□□□ 1.09
SHH-205ENST00000472308 KBTBD3Q8NAB2 608 aa21.87■■□□□ 1.09
SHH-205ENST00000472308 GDPD5Q8WTR4 605 aa21.87■■□□□ 1.09
SHH-205ENST00000472308 PRR12Q9ULL5 1215 aa21.87■■□□□ 1.09
SHH-205ENST00000472308 WDFY4Q6ZS81 3184 aa21.86■■□□□ 1.09
SHH-205ENST00000472308 RBM47A0AV96 593 aaKnown RBP21.86■■□□□ 1.09
SHH-205ENST00000472308 ALDH5A1P51649 535 aaPredicted RBP21.86■■□□□ 1.09
SHH-205ENST00000472308 TMCO2Q7Z6W1 182 aaPredicted RBP21.86■■□□□ 1.09
SHH-205ENST00000472308 FTOQ9C0B1 505 aaKnown RBP eCLIP21.86■■□□□ 1.09
SHH-205ENST00000472308 CCPG1Q9ULG6 757 aa21.86■■□□□ 1.09
SHH-205ENST00000472308 KIF28PB7ZC32 967 aa21.85■■□□□ 1.09
SHH-205ENST00000472308 SMARCA5O60264 1052 aaPredicted RBP21.85■■□□□ 1.09
SHH-205ENST00000472308 BAIAP3O94812 1187 aa21.85■■□□□ 1.09
SHH-205ENST00000472308 TFAP4Q01664 338 aa21.85■■□□□ 1.09
SHH-205ENST00000472308 NFRKBQ6P4R8 1299 aa21.85■■□□□ 1.09
SHH-205ENST00000472308 ALYREFQ86V81 257 aaKnown RBP21.85■■□□□ 1.09
SHH-205ENST00000472308 OR6J1Q8NGC5 347 aa21.85■■□□□ 1.09
SHH-205ENST00000472308 GNAT2P19087 354 aa21.84■■□□□ 1.09
SHH-205ENST00000472308 WDR5P61964 334 aaKnown RBP21.84■■□□□ 1.09
SHH-205ENST00000472308 BAATQ14032 418 aaPredicted RBP21.84■■□□□ 1.09
SHH-205ENST00000472308 GPNMBQ14956 572 aa21.84■■□□□ 1.09
SHH-205ENST00000472308 IFNL3Q8IZI9 196 aa21.84■■□□□ 1.09
SHH-205ENST00000472308 RETREG2Q8NC44 543 aa21.84■■□□□ 1.09
SHH-205ENST00000472308 CTAGE1Q96RT6 745 aa21.84■■□□□ 1.09
SHH-205ENST00000472308 NFIBO00712 420 aa21.83■■□□□ 1.09
SHH-205ENST00000472308 RNF113AO15541 343 aaKnown RBP21.83■■□□□ 1.09
SHH-205ENST00000472308 APPP05067 770 aa21.83■■□□□ 1.09
SHH-205ENST00000472308 ICAM1P05362 532 aa21.83■■□□□ 1.09
SHH-205ENST00000472308 RCSD1Q6JBY9 416 aa21.83■■□□□ 1.09
SHH-205ENST00000472308 GPHNQ9NQX3 736 aaPredicted RBP21.83■■□□□ 1.09
SHH-205ENST00000472308 ECHDC1Q9NTX5 307 aa21.83■■□□□ 1.09
SHH-205ENST00000472308 LMCD1Q9NZU5 365 aa21.83■■□□□ 1.09
SHH-205ENST00000472308 A6NJR5 290 aa21.82■■□□□ 1.08
SHH-205ENST00000472308 PATL2C9JE40 543 aaKnown RBP21.82■■□□□ 1.08
SHH-205ENST00000472308 RBAK-RBAKDNI3L0D1 243 aa21.82■■□□□ 1.08
SHH-205ENST00000472308 DEFB103AP81534 67 aa21.82■■□□□ 1.08
SHH-205ENST00000472308 LRRCC1Q9C099 1032 aa21.82■■□□□ 1.08
SHH-205ENST00000472308 UBE2ZQ9H832 354 aaPredicted RBP21.82■■□□□ 1.08
SHH-205ENST00000472308 IL17RBQ9NRM6 502 aa21.82■■□□□ 1.08
SHH-205ENST00000472308 ADD3Q9UEY8 706 aaKnown RBP21.82■■□□□ 1.08
SHH-205ENST00000472308 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.81■■□□□ 1.08
SHH-205ENST00000472308 PRR33A8MZF0 331 aa21.81■■□□□ 1.08
SHH-205ENST00000472308 NMT2O60551 498 aa21.81■■□□□ 1.08
SHH-205ENST00000472308 PTPN11Q06124 597 aaPredicted RBP21.81■■□□□ 1.08
SHH-205ENST00000472308 PDE4BQ07343 736 aa21.81■■□□□ 1.08
SHH-205ENST00000472308 BFSP2Q13515 415 aa21.81■■□□□ 1.08
SHH-205ENST00000472308 TSHZ3Q63HK5 1081 aa21.81■■□□□ 1.08
SHH-205ENST00000472308 SLC30A10Q6XR72 485 aa21.81■■□□□ 1.08
SHH-205ENST00000472308 COPS5Q92905 334 aa21.81■■□□□ 1.08
SHH-205ENST00000472308 RANBP17Q9H2T7 1088 aaKnown RBP21.81■■□□□ 1.08
SHH-205ENST00000472308 SUGCTQ9HAC7 445 aa21.81■■□□□ 1.08
SHH-205ENST00000472308 STX8Q9UNK0 236 aa21.81■■□□□ 1.08
SHH-205ENST00000472308 LOC102724159A0A0B4J2E5 919 aa21.8■■□□□ 1.08
SHH-205ENST00000472308 KCNJ6P48051 423 aa21.8■■□□□ 1.08
SHH-205ENST00000472308 PPARAQ07869 468 aa21.8■■□□□ 1.08
SHH-205ENST00000472308 PWP2Q15269 919 aaKnown RBP21.8■■□□□ 1.08
SHH-205ENST00000472308 TCTN1Q2MV58 587 aa21.8■■□□□ 1.08
SHH-205ENST00000472308 FAM178BQ8IXR5 827 aa21.8■■□□□ 1.08
SHH-205ENST00000472308 GJD3Q8N144 294 aa21.8■■□□□ 1.08
SHH-205ENST00000472308 MTUS1Q9ULD2 1270 aa21.8■■□□□ 1.08
SHH-205ENST00000472308 DDX19BQ9UMR2 479 aa21.8■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms