RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 FOXP2O15409 715 aa11.86□□□□□ -0.51
CHD3-208ENST00000470531 ECM2O94769 699 aaPredicted RBP11.86□□□□□ -0.51
CHD3-208ENST00000470531 INPP5BP32019 993 aa11.86□□□□□ -0.51
CHD3-208ENST00000470531 VPS41P49754 854 aa11.86□□□□□ -0.51
CHD3-208ENST00000470531 CACNB3P54284 484 aa11.86□□□□□ -0.51
CHD3-208ENST00000470531 TBCKQ8TEA7 893 aa11.86□□□□□ -0.51
CHD3-208ENST00000470531 PIGSQ96S52 555 aa11.86□□□□□ -0.51
CHD3-208ENST00000470531 LSM14BQ9BX40 385 aaKnown RBP11.86□□□□□ -0.51
CHD3-208ENST00000470531 UBXN6Q9BZV1 441 aa11.86□□□□□ -0.51
CHD3-208ENST00000470531 YY1AP1Q9H869 796 aa11.86□□□□□ -0.51
CHD3-208ENST00000470531 PPP1R1BQ9UD71 204 aaPredicted RBP11.86□□□□□ -0.51
CHD3-208ENST00000470531 JCADQ9P266 1359 aa11.86□□□□□ -0.51
CHD3-208ENST00000470531 KRT14P02533 472 aa11.86□□□□□ -0.51
CHD3-208ENST00000470531 KCNJ6P48051 423 aa11.86□□□□□ -0.51
CHD3-208ENST00000470531 SATB1Q01826 763 aa11.86□□□□□ -0.51
CHD3-208ENST00000470531 CALCRLQ16602 461 aa11.86□□□□□ -0.51
CHD3-208ENST00000470531 PHLDB2Q86SQ0 1253 aa11.86□□□□□ -0.51
CHD3-208ENST00000470531 RPAINQ86UA6 219 aa11.86□□□□□ -0.51
CHD3-208ENST00000470531 FAM114A1Q8IWE2 563 aa11.86□□□□□ -0.51
CHD3-208ENST00000470531 EHBP1Q8NDI1 1231 aa11.86□□□□□ -0.51
CHD3-208ENST00000470531 RBM28Q9NW13 759 aaKnown RBP11.86□□□□□ -0.51
CHD3-208ENST00000470531 CRYBG1Q9Y4K1 1723 aa11.86□□□□□ -0.51
CHD3-208ENST00000470531 LOC102724428A0A0B4J2F2 783 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 SIK1P57059 783 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 KLHL30Q0D2K2 578 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 STK4Q13043 487 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 NONOQ15233 471 aaKnown RBP eCLIP11.85□□□□□ -0.51
CHD3-208ENST00000470531 KCTD1Q719H9 257 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 MB21D1Q8N884 522 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 LRRC1Q9BTT6 524 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 JRKLQ9Y4A0 524 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 RGPD8O14715 1765 aaPredicted RBP11.85□□□□□ -0.51
CHD3-208ENST00000470531 SORBS3O60504 671 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 UFL1O94874 794 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 SLURP2P0DP57 97 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 SEMA3FQ13275 785 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 WHAMMP3Q1A5X7 153 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 CPLX4Q7Z7G2 160 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 FAM133AQ8N9E0 248 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 GIMAP7Q8NHV1 300 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 EYA3Q99504 573 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 SELENOOQ9BVL4 669 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 RAB34Q9BZG1 259 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 HAUS4Q9H6D7 363 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 WDR17Q8IZU2 1322 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 CHD2O14647 1828 aaKnown RBP11.85□□□□□ -0.51
CHD3-208ENST00000470531 ZSCAN5CA6NGD5 496 aaPredicted RBP11.85□□□□□ -0.51
CHD3-208ENST00000470531 CLIC2O15247 247 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 SYCP3Q8IZU3 236 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 REXO1Q8N1G1 1221 aaKnown RBP11.85□□□□□ -0.51
CHD3-208ENST00000470531 HDAC7Q8WUI4 952 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 TBC1D5Q92609 795 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 CCDC114Q96M63 670 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 CAPS2Q9BXY5 557 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 HPSEQ9Y251 543 aa11.85□□□□□ -0.51
CHD3-208ENST00000470531 H7C1D1 291 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 ATP8B1O43520 1251 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 ERLIN2O94905 339 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 NEFHP12036 1026 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 IFNAR2P48551 515 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 IFT88Q13099 833 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 UBE4AQ14139 1066 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 SPICE1Q8N0Z3 855 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 TRIML1Q8N9V2 468 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 PANX2Q96RD6 677 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 AGXT2Q9BYV1 514 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 DNAJC17Q9NVM6 304 aaKnown RBP11.84□□□□□ -0.51
CHD3-208ENST00000470531 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.84□□□□□ -0.51
CHD3-208ENST00000470531 A0A1B0GTH6 734 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 GSTTP1A0A1W2PQM5 241 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 MCM3P25205 808 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 DNM2P50570 870 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 ZNF658Q5TYW1 1059 aaPredicted RBP11.84□□□□□ -0.51
CHD3-208ENST00000470531 FBXW10Q5XX13 1052 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.84□□□□□ -0.51
CHD3-208ENST00000470531 COG1Q8WTW3 980 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 MED15Q96RN5 788 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 NAA15Q9BXJ9 866 aaKnown RBP11.84□□□□□ -0.51
CHD3-208ENST00000470531 CHORDC1Q9UHD1 332 aaPredicted RBP11.84□□□□□ -0.51
CHD3-208ENST00000470531 RICTORQ6R327 1708 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 NWD1Q149M9 1564 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 BICDL2A1A5D9 508 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 HEXIM1O94992 359 aaKnown RBP11.84□□□□□ -0.51
CHD3-208ENST00000470531 MAP2K2P36507 400 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 E2F5Q15329 346 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 ANKRD40Q6AI12 368 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 SLC30A10Q6XR72 485 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 DAAM2Q86T65 1068 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 SLC51AQ86UW1 340 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 TAB3Q8N5C8 712 aaPredicted RBP11.84□□□□□ -0.51
CHD3-208ENST00000470531 OR2W6PQ8NHA6 318 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 SH2D3AQ9BRG2 576 aa11.84□□□□□ -0.51
CHD3-208ENST00000470531 TECPR2O15040 1411 aa11.83□□□□□ -0.52
CHD3-208ENST00000470531 KDM6AO15550 1401 aaPredicted RBP11.83□□□□□ -0.52
CHD3-208ENST00000470531 SLCO1A2P46721 670 aa11.83□□□□□ -0.52
CHD3-208ENST00000470531 PABPC4Q13310 644 aaKnown RBP eCLIP11.83□□□□□ -0.521e-6■■□□□ 13.3
CHD3-208ENST00000470531 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.83□□□□□ -0.52
CHD3-208ENST00000470531 DISC1Q9NRI5 854 aa11.83□□□□□ -0.52
CHD3-208ENST00000470531 PPP1R3GB7ZBB8 358 aa11.83□□□□□ -0.52
CHD3-208ENST00000470531 ADAMTS3O15072 1205 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms