RNA–Protein interactions for RNA: ENST00000469504.1

COL4A3-204, Transcript of collagen type IV alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL4A3, Length 521 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-204ENST00000469504 BAATQ14032 418 aaPredicted RBP12.86□□□□□ -0.35
COL4A3-204ENST00000469504 DUSP28Q4G0W2 176 aa12.86□□□□□ -0.35
COL4A3-204ENST00000469504 BRDTQ58F21 947 aaPredicted RBP12.86□□□□□ -0.35
COL4A3-204ENST00000469504 PSRC1Q6PGN9 363 aaPredicted RBP12.86□□□□□ -0.35
COL4A3-204ENST00000469504 CWC27Q6UX04 472 aaKnown RBP12.86□□□□□ -0.35
COL4A3-204ENST00000469504 RNF207Q6ZRF8 634 aa12.86□□□□□ -0.35
COL4A3-204ENST00000469504 KRT23Q9C075 422 aa12.86□□□□□ -0.35
COL4A3-204ENST00000469504 GPCPD1Q9NPB8 672 aa12.86□□□□□ -0.35
COL4A3-204ENST00000469504 POLR3EQ9NVU0 708 aa12.86□□□□□ -0.35
COL4A3-204ENST00000469504 ASTN1O14525 1302 aa12.86□□□□□ -0.35
COL4A3-204ENST00000469504 RAD50Q92878 1312 aa12.86□□□□□ -0.35
COL4A3-204ENST00000469504 PTPDC1A2A3K4 754 aa12.85□□□□□ -0.35
COL4A3-204ENST00000469504 NFIBO00712 420 aa12.85□□□□□ -0.35
COL4A3-204ENST00000469504 DYNC1LI2O43237 492 aaPredicted RBP12.85□□□□□ -0.35
COL4A3-204ENST00000469504 CD4P01730 458 aa12.85□□□□□ -0.35
COL4A3-204ENST00000469504 CPT1AP50416 773 aa12.85□□□□□ -0.35
COL4A3-204ENST00000469504 SNAP25P60880 206 aa12.85□□□□□ -0.35
COL4A3-204ENST00000469504 ITGA7Q13683 1181 aa12.85□□□□□ -0.35
COL4A3-204ENST00000469504 ASPRV1Q53RT3 343 aa12.85□□□□□ -0.35
COL4A3-204ENST00000469504 KIAA1211Q6ZU35 1233 aa12.85□□□□□ -0.35
COL4A3-204ENST00000469504 RASGRP2Q7LDG7 609 aa12.85□□□□□ -0.35
COL4A3-204ENST00000469504 FBXO16Q8IX29 292 aaPredicted RBP12.85□□□□□ -0.35
COL4A3-204ENST00000469504 PNMA1Q8ND90 353 aa12.85□□□□□ -0.35
COL4A3-204ENST00000469504 CLEC4DQ8WXI8 215 aa12.85□□□□□ -0.35
COL4A3-204ENST00000469504 CHMP4CQ96CF2 233 aa12.85□□□□□ -0.35
COL4A3-204ENST00000469504 YTHDC1Q96MU7 727 aaKnown RBP12.85□□□□□ -0.35
COL4A3-204ENST00000469504 GUCD1Q96NT3 240 aa12.85□□□□□ -0.35
COL4A3-204ENST00000469504 MTIF3Q9H2K0 278 aaKnown RBP12.85□□□□□ -0.35
COL4A3-204ENST00000469504 KAT14Q9H8E8 782 aa12.85□□□□□ -0.35
COL4A3-204ENST00000469504 NEDD4P46934 1319 aa12.85□□□□□ -0.35
COL4A3-204ENST00000469504 KPNA6O60684 536 aa12.84□□□□□ -0.35
COL4A3-204ENST00000469504 KDM4AO75164 1064 aa12.84□□□□□ -0.35
COL4A3-204ENST00000469504 SUPT20HL2P0C7V6 817 aa12.84□□□□□ -0.35
COL4A3-204ENST00000469504 EDNRBP24530 442 aa12.84□□□□□ -0.35
COL4A3-204ENST00000469504 RPS6P62753 249 aaKnown RBP12.84□□□□□ -0.35
COL4A3-204ENST00000469504 BEX3Q00994 111 aa12.84□□□□□ -0.35
COL4A3-204ENST00000469504 CXCL17Q6UXB2 119 aa12.84□□□□□ -0.35
COL4A3-204ENST00000469504 MCF2L2Q86YR7 1114 aa12.84□□□□□ -0.35
COL4A3-204ENST00000469504 EXOC6Q8TAG9 804 aa12.84□□□□□ -0.35
COL4A3-204ENST00000469504 SCFD2Q8WU76 684 aa12.84□□□□□ -0.35
COL4A3-204ENST00000469504 ZSCAN10Q96SZ4 725 aaPredicted RBP12.84□□□□□ -0.35
COL4A3-204ENST00000469504 WDR11Q9BZH6 1224 aa12.84□□□□□ -0.35
COL4A3-204ENST00000469504 SEMA6BQ9H3T3 888 aa12.84□□□□□ -0.35
COL4A3-204ENST00000469504 ABCB11O95342 1321 aa12.84□□□□□ -0.35
COL4A3-204ENST00000469504 LRRC37A2A6NM11 1700 aa12.83□□□□□ -0.36
COL4A3-204ENST00000469504 CALML3P27482 149 aa12.83□□□□□ -0.36
COL4A3-204ENST00000469504 PDE4DQ08499 809 aa12.83□□□□□ -0.36
COL4A3-204ENST00000469504 EEPD1Q7L9B9 569 aa12.83□□□□□ -0.36
COL4A3-204ENST00000469504 RUFY2Q8WXA3 655 aa12.83□□□□□ -0.36
COL4A3-204ENST00000469504 UBAC1Q9BSL1 405 aa12.83□□□□□ -0.36
COL4A3-204ENST00000469504 GPHNQ9NQX3 736 aaPredicted RBP12.83□□□□□ -0.36
COL4A3-204ENST00000469504 PDGFCQ9NRA1 345 aa12.83□□□□□ -0.36
COL4A3-204ENST00000469504 MCM3APO60318 1980 aa12.82□□□□□ -0.36
COL4A3-204ENST00000469504 PARP1P09874 1014 aaKnown RBP12.82□□□□□ -0.36
COL4A3-204ENST00000469504 EPHB4P54760 987 aa12.82□□□□□ -0.36
COL4A3-204ENST00000469504 IRX5P78411 483 aaPredicted RBP12.82□□□□□ -0.36
COL4A3-204ENST00000469504 TRAF1Q13077 416 aa12.82□□□□□ -0.36
COL4A3-204ENST00000469504 PPP2R5BQ15173 497 aa12.82□□□□□ -0.36
COL4A3-204ENST00000469504 CDC37Q16543 378 aaPredicted RBP12.82□□□□□ -0.36
COL4A3-204ENST00000469504 TMEM240Q5SV17 173 aa12.82□□□□□ -0.36
COL4A3-204ENST00000469504 RASIP1Q5U651 963 aa12.82□□□□□ -0.36
COL4A3-204ENST00000469504 SLC30A10Q6XR72 485 aa12.82□□□□□ -0.36
COL4A3-204ENST00000469504 SAMD3Q8N6K7 520 aa12.82□□□□□ -0.36
COL4A3-204ENST00000469504 ENAHQ8N8S7 591 aaPredicted RBP12.82□□□□□ -0.36
COL4A3-204ENST00000469504 SPDYE1Q8NFV5 336 aaPredicted RBP12.82□□□□□ -0.36
COL4A3-204ENST00000469504 CDX2Q99626 313 aaPredicted RBP12.82□□□□□ -0.36
COL4A3-204ENST00000469504 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.82□□□□□ -0.36
COL4A3-204ENST00000469504 HIPK3Q9H422 1215 aa12.82□□□□□ -0.36
COL4A3-204ENST00000469504 IL23AQ9NPF7 189 aa12.82□□□□□ -0.36
COL4A3-204ENST00000469504 MAP3K20Q9NYL2 800 aaKnown RBP12.82□□□□□ -0.36
COL4A3-204ENST00000469504 ZSWIM5Q9P217 1185 aa12.82□□□□□ -0.36
COL4A3-204ENST00000469504 CDH23Q9H251 3354 aa12.82□□□□□ -0.36
COL4A3-204ENST00000469504 TNKSO95271 1327 aa12.82□□□□□ -0.36
COL4A3-204ENST00000469504 LAMA4Q16363 1823 aa12.81□□□□□ -0.36
COL4A3-204ENST00000469504 LAMA2P24043 3122 aaKnown RBP12.81□□□□□ -0.36
COL4A3-204ENST00000469504 B4E1Z4 1266 aa12.81□□□□□ -0.36
COL4A3-204ENST00000469504 DLL1O00548 723 aa12.81□□□□□ -0.36
COL4A3-204ENST00000469504 PFKMP08237 780 aa12.81□□□□□ -0.36
COL4A3-204ENST00000469504 CSF2RAP15509 400 aa12.81□□□□□ -0.36
COL4A3-204ENST00000469504 DNAJB2P25686 324 aa12.81□□□□□ -0.36
COL4A3-204ENST00000469504 FXR2P51116 673 aaKnown RBP eCLIP12.81□□□□□ -0.36
COL4A3-204ENST00000469504 PTPN11Q06124 597 aaPredicted RBP12.81□□□□□ -0.36
COL4A3-204ENST00000469504 TRDNQ13061 729 aa12.81□□□□□ -0.36
COL4A3-204ENST00000469504 TTLL4Q14679 1199 aa12.81□□□□□ -0.36
COL4A3-204ENST00000469504 RPUSD2Q8IZ73 545 aaKnown RBP12.81□□□□□ -0.36
COL4A3-204ENST00000469504 ADGRF4Q8IZF3 695 aa12.81□□□□□ -0.36
COL4A3-204ENST00000469504 OR6J1Q8NGC5 347 aa12.81□□□□□ -0.36
COL4A3-204ENST00000469504 NSUN6Q8TEA1 469 aaKnown RBP12.81□□□□□ -0.36
COL4A3-204ENST00000469504 FAM161BQ96MY7 647 aa12.81□□□□□ -0.36
COL4A3-204ENST00000469504 IWS1Q96ST2 819 aa12.81□□□□□ -0.36
COL4A3-204ENST00000469504 ZKSCAN3Q9BRR0 538 aa12.81□□□□□ -0.36
COL4A3-204ENST00000469504 MTG1Q9BT17 334 aaPredicted RBP12.81□□□□□ -0.36
COL4A3-204ENST00000469504 MRPL11Q9Y3B7 192 aaKnown RBP12.81□□□□□ -0.36
COL4A3-204ENST00000469504 A6NJR5 290 aa12.8□□□□□ -0.36
COL4A3-204ENST00000469504 PURAQ00577 322 aaKnown RBP12.8□□□□□ -0.36
COL4A3-204ENST00000469504 IFIT1BQ5T764 474 aaKnown RBP12.8□□□□□ -0.36
COL4A3-204ENST00000469504 TTC22Q5TAA0 569 aa12.8□□□□□ -0.36
COL4A3-204ENST00000469504 NFRKBQ6P4R8 1299 aa12.8□□□□□ -0.36
COL4A3-204ENST00000469504 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.8□□□□□ -0.36
COL4A3-204ENST00000469504 HERVK_113Q902F9 699 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms