RNA–Protein interactions for RNA: ENST00000468300.5

BRCA1-208, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 3,273 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-208ENST00000468300 CLMNQ96JQ2 1002 aa9.41□□□□□ -0.9
BRCA1-208ENST00000468300 MTMR9Q96QG7 549 aa9.41□□□□□ -0.9
BRCA1-208ENST00000468300 NOL7Q9UMY1 257 aaKnown RBP9.41□□□□□ -0.9
BRCA1-208ENST00000468300 GOLGA6L4A6NEF3 574 aa9.4□□□□□ -0.9
BRCA1-208ENST00000468300 PIK3CDO00329 1044 aa9.4□□□□□ -0.9
BRCA1-208ENST00000468300 MAP3K9P80192 1104 aa9.4□□□□□ -0.9
BRCA1-208ENST00000468300 EXOC8Q8IYI6 725 aa9.4□□□□□ -0.9
BRCA1-208ENST00000468300 CLEC4DQ8WXI8 215 aa9.4□□□□□ -0.9
BRCA1-208ENST00000468300 NUP62CLQ9H1M0 184 aa9.4□□□□□ -0.9
BRCA1-208ENST00000468300 RPAP3Q9H6T3 665 aaPredicted RBP9.4□□□□□ -0.9
BRCA1-208ENST00000468300 SLC38A10Q9HBR0 1119 aa9.4□□□□□ -0.9
BRCA1-208ENST00000468300 XRCC6P12956 609 aaKnown RBP eCLIP9.4□□□□□ -0.9
BRCA1-208ENST00000468300 HMGCS2P54868 508 aa9.4□□□□□ -0.9
BRCA1-208ENST00000468300 MOGSQ13724 837 aa9.4□□□□□ -0.9
BRCA1-208ENST00000468300 LONRF3Q496Y0 759 aa9.4□□□□□ -0.9
BRCA1-208ENST00000468300 NEK8Q86SG6 692 aa9.4□□□□□ -0.9
BRCA1-208ENST00000468300 LRRC15Q8TF66 581 aa9.4□□□□□ -0.9
BRCA1-208ENST00000468300 CHURC1Q8WUH1 139 aa9.4□□□□□ -0.9
BRCA1-208ENST00000468300 ERCC4Q92889 916 aaPredicted RBP9.4□□□□□ -0.9
BRCA1-208ENST00000468300 AGBL1Q96MI9 1066 aa9.4□□□□□ -0.9
BRCA1-208ENST00000468300 CEP131Q9UPN4 1083 aa9.4□□□□□ -0.9
BRCA1-208ENST00000468300 TDP2O95551 362 aa9.39□□□□□ -0.91
BRCA1-208ENST00000468300 ARL6IP4Q66PJ3 421 aaKnown RBP9.39□□□□□ -0.91
BRCA1-208ENST00000468300 CCDC174Q6PII3 467 aa9.39□□□□□ -0.91
BRCA1-208ENST00000468300 CKAP2LQ8IYA6 745 aa9.39□□□□□ -0.91
BRCA1-208ENST00000468300 SYAP1Q96A49 352 aaPredicted RBP9.39□□□□□ -0.91
BRCA1-208ENST00000468300 MBOAT7Q96N66 472 aa9.39□□□□□ -0.91
BRCA1-208ENST00000468300 FEZ1Q99689 392 aa9.39□□□□□ -0.91
BRCA1-208ENST00000468300 SLF1Q9BQI6 1058 aa9.39□□□□□ -0.91
BRCA1-208ENST00000468300 PPP1R9AQ9ULJ8 1098 aa9.39□□□□□ -0.91
BRCA1-208ENST00000468300 ACTN4O43707 911 aaKnown RBP9.39□□□□□ -0.91
BRCA1-208ENST00000468300 GHRHRQ02643 423 aa9.39□□□□□ -0.91
BRCA1-208ENST00000468300 POTEDQ86YR6 584 aa9.39□□□□□ -0.91
BRCA1-208ENST00000468300 JMYQ8N9B5 988 aa9.39□□□□□ -0.91
BRCA1-208ENST00000468300 PRPF38AQ8NAV1 312 aaKnown RBP9.39□□□□□ -0.91
BRCA1-208ENST00000468300 FERMT2Q96AC1 680 aa9.39□□□□□ -0.91
BRCA1-208ENST00000468300 PICK1Q9NRD5 415 aa9.39□□□□□ -0.91
BRCA1-208ENST00000468300 ISY1Q9ULR0 285 aaKnown RBP9.39□□□□□ -0.91
BRCA1-208ENST00000468300 TRAF5O00463 557 aa9.39□□□□□ -0.91
BRCA1-208ENST00000468300 FOXN1O15353 648 aa9.39□□□□□ -0.91
BRCA1-208ENST00000468300 CCNT1O60563 726 aaKnown RBP9.39□□□□□ -0.91
BRCA1-208ENST00000468300 ICAM1P05362 532 aa9.39□□□□□ -0.91
BRCA1-208ENST00000468300 MRPL12P52815 198 aaKnown RBP9.39□□□□□ -0.91
BRCA1-208ENST00000468300 USP14P54578 494 aa9.39□□□□□ -0.91
BRCA1-208ENST00000468300 IKQ13123 557 aaPredicted RBP9.39□□□□□ -0.91
BRCA1-208ENST00000468300 E2F4Q16254 413 aa9.39□□□□□ -0.91
BRCA1-208ENST00000468300 LETM2Q2VYF4 491 aa9.39□□□□□ -0.91
BRCA1-208ENST00000468300 PPP4R3AQ6IN85 833 aa9.39□□□□□ -0.91
BRCA1-208ENST00000468300 LDHDQ86WU2 507 aa9.39□□□□□ -0.91
BRCA1-208ENST00000468300 SYMPKQ92797 1274 aaKnown RBP9.39□□□□□ -0.91
BRCA1-208ENST00000468300 HAS1Q92839 578 aa9.39□□□□□ -0.91
BRCA1-208ENST00000468300 LENG9Q96B70 501 aa9.39□□□□□ -0.91
BRCA1-208ENST00000468300 TIGD1Q96MW7 591 aa9.39□□□□□ -0.91
BRCA1-208ENST00000468300 KCNH3Q9ULD8 1083 aa9.39□□□□□ -0.91
BRCA1-208ENST00000468300 CYP3A7-CYP3A51PA0A087WV96 503 aa9.38□□□□□ -0.91
BRCA1-208ENST00000468300 A0A087WWV3 80 aa9.38□□□□□ -0.91
BRCA1-208ENST00000468300 VWA3AA6NCI4 1184 aa9.38□□□□□ -0.91
BRCA1-208ENST00000468300 IQCA1LA6NCM1 817 aa9.38□□□□□ -0.91
BRCA1-208ENST00000468300 C19orf81C9J6K1 198 aa9.38□□□□□ -0.91
BRCA1-208ENST00000468300 VWA5AO00534 786 aa9.38□□□□□ -0.91
BRCA1-208ENST00000468300 LETM1O95202 739 aaPredicted RBP9.38□□□□□ -0.91
BRCA1-208ENST00000468300 BMP15O95972 392 aa9.38□□□□□ -0.91
BRCA1-208ENST00000468300 CYP3A7P24462 503 aa9.38□□□□□ -0.91
BRCA1-208ENST00000468300 HOXA13P31271 388 aaPredicted RBP9.38□□□□□ -0.91
BRCA1-208ENST00000468300 GJA5P36382 358 aa9.38□□□□□ -0.91
BRCA1-208ENST00000468300 PRPHP41219 470 aa9.38□□□□□ -0.91
BRCA1-208ENST00000468300 EAPPQ56P03 285 aaPredicted RBP9.38□□□□□ -0.91
BRCA1-208ENST00000468300 TREML2Q5T2D2 321 aa9.38□□□□□ -0.91
BRCA1-208ENST00000468300 LDLRAD1Q5T700 205 aa9.38□□□□□ -0.91
BRCA1-208ENST00000468300 CATSPERGQ6ZRH7 1159 aa9.38□□□□□ -0.91
BRCA1-208ENST00000468300 TNMDQ9H2S6 317 aa9.38□□□□□ -0.91
BRCA1-208ENST00000468300 GRPEL1Q9HAV7 217 aa9.38□□□□□ -0.91
BRCA1-208ENST00000468300 AS3MTQ9HBK9 375 aa9.38□□□□□ -0.91
BRCA1-208ENST00000468300 GOLGA6L3A6NEY3 463 aa9.38□□□□□ -0.91
BRCA1-208ENST00000468300 CCDC73Q6ZRK6 1079 aa9.38□□□□□ -0.91
BRCA1-208ENST00000468300 PNMA8AQ86V59 439 aaPredicted RBP9.38□□□□□ -0.91
BRCA1-208ENST00000468300 ANO3Q9BYT9 981 aa9.38□□□□□ -0.91
BRCA1-208ENST00000468300 COL20A1Q9P218 1284 aa9.38□□□□□ -0.91
BRCA1-208ENST00000468300 RIPK3Q9Y572 518 aa9.38□□□□□ -0.91
BRCA1-208ENST00000468300 PP2D1A8MPX8 630 aa9.37□□□□□ -0.91
BRCA1-208ENST00000468300 CDC25AP30304 524 aa9.37□□□□□ -0.91
BRCA1-208ENST00000468300 SYKP43405 635 aa9.37□□□□□ -0.91
BRCA1-208ENST00000468300 HSD17B4P51659 736 aa9.37□□□□□ -0.91
BRCA1-208ENST00000468300 MUM1L1Q5H9M0 696 aa9.37□□□□□ -0.91
BRCA1-208ENST00000468300 ELOA2Q8IYF1 753 aaPredicted RBP9.37□□□□□ -0.91
BRCA1-208ENST00000468300 ATG4CQ96DT6 458 aa9.37□□□□□ -0.91
BRCA1-208ENST00000468300 MTRQ99707 1265 aa9.37□□□□□ -0.91
BRCA1-208ENST00000468300 MMTAG2Q9BU76 263 aaKnown RBP9.37□□□□□ -0.91
BRCA1-208ENST00000468300 PANK2Q9BZ23 570 aa9.37□□□□□ -0.91
BRCA1-208ENST00000468300 SH3BP1Q9Y3L3 701 aa9.37□□□□□ -0.91
BRCA1-208ENST00000468300 IRF6O14896 467 aa9.37□□□□□ -0.91
BRCA1-208ENST00000468300 SREBF1P36956 1147 aa9.37□□□□□ -0.91
BRCA1-208ENST00000468300 AP3B2Q13367 1082 aa9.37□□□□□ -0.91
BRCA1-208ENST00000468300 ORC2Q13416 577 aaPredicted RBP9.37□□□□□ -0.91
BRCA1-208ENST00000468300 MAP1SQ66K74 1059 aaPredicted RBP9.37□□□□□ -0.91
BRCA1-208ENST00000468300 KRBA2Q6ZNG9 492 aa9.37□□□□□ -0.91
BRCA1-208ENST00000468300 SH3RF1Q7Z6J0 888 aa9.37□□□□□ -0.91
BRCA1-208ENST00000468300 GJA10Q969M2 543 aa9.37□□□□□ -0.91
BRCA1-208ENST00000468300 TANGO6Q9C0B7 1094 aa9.37□□□□□ -0.91
BRCA1-208ENST00000468300 ELP3Q9H9T3 547 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms