RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 LOC102724159A0A0B4J2E5 919 aa20.48■□□□□ 0.87
COL7A1-206ENST00000466591 ITGB8P26012 769 aa20.48■□□□□ 0.87
COL7A1-206ENST00000466591 PPIGQ13427 754 aaKnown RBP eCLIP20.48■□□□□ 0.872e-10■■■□□ 16.1
COL7A1-206ENST00000466591 PWP2Q15269 919 aaKnown RBP20.48■□□□□ 0.87
COL7A1-206ENST00000466591 CDC37Q16543 378 aaPredicted RBP20.48■□□□□ 0.87
COL7A1-206ENST00000466591 IFIT1BQ5T764 474 aaKnown RBP20.48■□□□□ 0.87
COL7A1-206ENST00000466591 FAM109BQ6ICB4 259 aaPredicted RBP20.48■□□□□ 0.87
COL7A1-206ENST00000466591 OR6J1Q8NGC5 347 aa20.48■□□□□ 0.87
COL7A1-206ENST00000466591 WDR11Q9BZH6 1224 aa20.48■□□□□ 0.87
COL7A1-206ENST00000466591 VAT1LQ9HCJ6 419 aa20.48■□□□□ 0.87
COL7A1-206ENST00000466591 Q9Y3F1 56 aa20.48■□□□□ 0.87
COL7A1-206ENST00000466591 TNKSO95271 1327 aa20.48■□□□□ 0.87
COL7A1-206ENST00000466591 ERICH2A1L162 156 aa20.47■□□□□ 0.87
COL7A1-206ENST00000466591 SNHG28P0DPA3 235 aa20.47■□□□□ 0.87
COL7A1-206ENST00000466591 CPT1AP50416 773 aa20.47■□□□□ 0.87
COL7A1-206ENST00000466591 RPS6P62753 249 aaKnown RBP20.47■□□□□ 0.87
COL7A1-206ENST00000466591 SMAD3P84022 425 aaKnown RBP20.47■□□□□ 0.87
COL7A1-206ENST00000466591 PPP2R5BQ15173 497 aa20.47■□□□□ 0.87
COL7A1-206ENST00000466591 TTC22Q5TAA0 569 aa20.47■□□□□ 0.87
COL7A1-206ENST00000466591 GNEQ9Y223 722 aaKnown RBP20.47■□□□□ 0.87
COL7A1-206ENST00000466591 LAMA4Q16363 1823 aa20.46■□□□□ 0.87
COL7A1-206ENST00000466591 MYL3P08590 195 aa20.46■□□□□ 0.87
COL7A1-206ENST00000466591 ITGA7Q13683 1181 aa20.46■□□□□ 0.87
COL7A1-206ENST00000466591 MFSD5Q6N075 450 aa20.46■□□□□ 0.87
COL7A1-206ENST00000466591 TAPT1Q6NXT6 567 aa20.46■□□□□ 0.87
COL7A1-206ENST00000466591 RALYLQ86SE5 291 aaKnown RBP20.46■□□□□ 0.87
COL7A1-206ENST00000466591 MCF2L2Q86YR7 1114 aa20.46■□□□□ 0.87
COL7A1-206ENST00000466591 SEZ6LQ9BYH1 1024 aa20.46■□□□□ 0.87
COL7A1-206ENST00000466591 CPVLQ9H3G5 476 aa20.46■□□□□ 0.87
COL7A1-206ENST00000466591 POLR3EQ9NVU0 708 aa20.46■□□□□ 0.87
COL7A1-206ENST00000466591 ZSWIM5Q9P217 1185 aa20.46■□□□□ 0.87
COL7A1-206ENST00000466591 ASTN1O14525 1302 aa20.46■□□□□ 0.87
COL7A1-206ENST00000466591 ABCB11O95342 1321 aa20.46■□□□□ 0.87
COL7A1-206ENST00000466591 DNAH12Q6ZR08 3092 aa20.45■□□□□ 0.86
COL7A1-206ENST00000466591 CDK7P50613 346 aa20.45■□□□□ 0.86
COL7A1-206ENST00000466591 DUSP28Q4G0W2 176 aa20.45■□□□□ 0.86
COL7A1-206ENST00000466591 FAM47CQ5HY64 1035 aa20.45■□□□□ 0.86
COL7A1-206ENST00000466591 FAM126BQ8IXS8 530 aa20.45■□□□□ 0.86
COL7A1-206ENST00000466591 ENAHQ8N8S7 591 aaPredicted RBP20.45■□□□□ 0.86
COL7A1-206ENST00000466591 DNERQ8NFT8 737 aa20.45■□□□□ 0.86
COL7A1-206ENST00000466591 CLEC4DQ8WXI8 215 aa20.45■□□□□ 0.86
COL7A1-206ENST00000466591 MTIF3Q9H2K0 278 aaKnown RBP20.45■□□□□ 0.86
COL7A1-206ENST00000466591 TBX21Q9UL17 535 aa20.45■□□□□ 0.86
COL7A1-206ENST00000466591 LAMA3Q16787 3333 aa20.45■□□□□ 0.86
COL7A1-206ENST00000466591 CHMP4BP1P59074 171 aa20.44■□□□□ 0.86
COL7A1-206ENST00000466591 PSRC1Q6PGN9 363 aaPredicted RBP20.44■□□□□ 0.86
COL7A1-206ENST00000466591 FBXO11Q86XK2 927 aa20.44■□□□□ 0.86
COL7A1-206ENST00000466591 ADGRF4Q8IZF3 695 aa20.44■□□□□ 0.86
COL7A1-206ENST00000466591 SCFD2Q8WU76 684 aa20.44■□□□□ 0.86
COL7A1-206ENST00000466591 HIPK3Q9H422 1215 aa20.44■□□□□ 0.86
COL7A1-206ENST00000466591 MRPL11Q9Y3B7 192 aaKnown RBP20.44■□□□□ 0.86
COL7A1-206ENST00000466591 U3KPZ7 1027 aaPredicted RBP20.44■□□□□ 0.86
COL7A1-206ENST00000466591 EPHB4P54760 987 aa20.43■□□□□ 0.86
COL7A1-206ENST00000466591 PSMC6P62333 389 aa20.43■□□□□ 0.86
COL7A1-206ENST00000466591 NKX3-2P78367 333 aa20.43■□□□□ 0.86
COL7A1-206ENST00000466591 SART3Q15020 963 aaKnown RBP20.43■□□□□ 0.86
COL7A1-206ENST00000466591 MORC4Q8TE76 937 aa20.43■□□□□ 0.86
COL7A1-206ENST00000466591 LRRC37A2A6NM11 1700 aa20.43■□□□□ 0.86
COL7A1-206ENST00000466591 HSFX4A0A1B0GTS1 333 aaPredicted RBP20.42■□□□□ 0.86
COL7A1-206ENST00000466591 HSFX3A0A1B0GWH4 333 aaPredicted RBP20.42■□□□□ 0.86
COL7A1-206ENST00000466591 NKRFO15226 690 aaKnown RBP eCLIP20.42■□□□□ 0.86
COL7A1-206ENST00000466591 CTAGE5O15320 804 aa20.42■□□□□ 0.86
COL7A1-206ENST00000466591 TXNP10599 105 aaKnown RBP20.42■□□□□ 0.86
COL7A1-206ENST00000466591 CSF2RAP15509 400 aa20.42■□□□□ 0.86
COL7A1-206ENST00000466591 PTGS1P23219 599 aa20.42■□□□□ 0.86
COL7A1-206ENST00000466591 CYP2C18P33260 490 aa20.42■□□□□ 0.86
COL7A1-206ENST00000466591 TTLL4Q14679 1199 aa20.42■□□□□ 0.86
COL7A1-206ENST00000466591 ACRP10323 421 aa20.41■□□□□ 0.86
COL7A1-206ENST00000466591 GSPT1P15170 499 aaKnown RBP20.41■□□□□ 0.86
COL7A1-206ENST00000466591 PDE4AP27815 886 aa20.41■□□□□ 0.86
COL7A1-206ENST00000466591 QRICH1Q2TAL8 776 aa20.41■□□□□ 0.86
COL7A1-206ENST00000466591 ARHGEF16Q5VV41 709 aa20.41■□□□□ 0.86
COL7A1-206ENST00000466591 NSUN6Q8TEA1 469 aaKnown RBP20.41■□□□□ 0.86
COL7A1-206ENST00000466591 ANKS1AQ92625 1134 aa20.41■□□□□ 0.86
COL7A1-206ENST00000466591 GUCD1Q96NT3 240 aa20.41■□□□□ 0.86
COL7A1-206ENST00000466591 BUD13Q9BRD0 619 aaKnown RBP eCLIP20.41■□□□□ 0.86
COL7A1-206ENST00000466591 MTG1Q9BT17 334 aaPredicted RBP20.41■□□□□ 0.86
COL7A1-206ENST00000466591 NOD1Q9Y239 953 aa20.41■□□□□ 0.86
COL7A1-206ENST00000466591 DLL1O00548 723 aa20.4■□□□□ 0.86
COL7A1-206ENST00000466591 IFIT3O14879 490 aaKnown RBP20.4■□□□□ 0.86
COL7A1-206ENST00000466591 KPNA6O60684 536 aa20.4■□□□□ 0.86
COL7A1-206ENST00000466591 CFBP00751 764 aa20.4■□□□□ 0.86
COL7A1-206ENST00000466591 SUPT20HL2P0C7V6 817 aa20.4■□□□□ 0.86
COL7A1-206ENST00000466591 TMEM63BQ5T3F8 832 aa20.4■□□□□ 0.86
COL7A1-206ENST00000466591 SEPT14Q6ZU15 432 aa20.4■□□□□ 0.86
COL7A1-206ENST00000466591 RGS22Q8NE09 1264 aa20.4■□□□□ 0.86
COL7A1-206ENST00000466591 CDX2Q99626 313 aaPredicted RBP20.4■□□□□ 0.86
COL7A1-206ENST00000466591 AMNQ9BXJ7 453 aa20.4■□□□□ 0.86
COL7A1-206ENST00000466591 TRPV6Q9H1D0 765 aa20.4■□□□□ 0.86
COL7A1-206ENST00000466591 SEMA6BQ9H3T3 888 aa20.4■□□□□ 0.86
COL7A1-206ENST00000466591 B4GALT4O60513 344 aa20.39■□□□□ 0.85
COL7A1-206ENST00000466591 FOSL2P15408 326 aa20.39■□□□□ 0.85
COL7A1-206ENST00000466591 CCL23P55773 120 aa20.39■□□□□ 0.85
COL7A1-206ENST00000466591 TRAF1Q13077 416 aa20.39■□□□□ 0.85
COL7A1-206ENST00000466591 HOMER1Q86YM7 354 aa20.39■□□□□ 0.85
COL7A1-206ENST00000466591 RMDN3Q96TC7 470 aa20.39■□□□□ 0.85
COL7A1-206ENST00000466591 TMEM265A0A087WTH1 108 aa20.38■□□□□ 0.85
COL7A1-206ENST00000466591 KLRF2D3W0D1 207 aa20.38■□□□□ 0.85
COL7A1-206ENST00000466591 CD4P01730 458 aa20.38■□□□□ 0.85
COL7A1-206ENST00000466591 WTAPQ15007 396 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms