RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 DDX11Q96FC9 970 aa14.02□□□□□ -0.17
SQSTM1-206ENST00000466342 SEZ6LQ9BYH1 1024 aa14.02□□□□□ -0.17
SQSTM1-206ENST00000466342 ABHD16BQ9H3Z7 469 aa14.02□□□□□ -0.17
SQSTM1-206ENST00000466342 CTNNA3Q9UI47 895 aa14.02□□□□□ -0.17
SQSTM1-206ENST00000466342 SYNPO2Q9UMS6 1093 aa14.02□□□□□ -0.17
SQSTM1-206ENST00000466342 COL4A4P53420 1690 aaPredicted RBP14.01□□□□□ -0.17
SQSTM1-206ENST00000466342 IGKV6D-41A0A0C4DH26 115 aa14.01□□□□□ -0.17
SQSTM1-206ENST00000466342 F5H6K3 240 aa14.01□□□□□ -0.17
SQSTM1-206ENST00000466342 VWA5AO00534 786 aa14.01□□□□□ -0.17
SQSTM1-206ENST00000466342 CTAGE5O15320 804 aa14.01□□□□□ -0.17
SQSTM1-206ENST00000466342 PFKMP08237 780 aa14.01□□□□□ -0.17
SQSTM1-206ENST00000466342 HAND2P61296 217 aa14.01□□□□□ -0.17
SQSTM1-206ENST00000466342 KLRC3Q07444 240 aa14.01□□□□□ -0.17
SQSTM1-206ENST00000466342 ITGA7Q13683 1181 aa14.01□□□□□ -0.17
SQSTM1-206ENST00000466342 TTLL4Q14679 1199 aa14.01□□□□□ -0.17
SQSTM1-206ENST00000466342 KIAA1211Q6ZU35 1233 aa14.01□□□□□ -0.17
SQSTM1-206ENST00000466342 ZNF467Q7Z7K2 595 aaPredicted RBP14.01□□□□□ -0.17
SQSTM1-206ENST00000466342 PHOSPHO2Q8TCD6 241 aa14.01□□□□□ -0.17
SQSTM1-206ENST00000466342 SCLYQ96I15 445 aa14.01□□□□□ -0.17
SQSTM1-206ENST00000466342 AGBL1Q96MI9 1066 aa14.01□□□□□ -0.17
SQSTM1-206ENST00000466342 LMCD1Q9NZU5 365 aa14.01□□□□□ -0.17
SQSTM1-206ENST00000466342 CLIP2Q9UDT6 1046 aa14.01□□□□□ -0.17
SQSTM1-206ENST00000466342 ZNF214Q9UL59 606 aaPredicted RBP14.01□□□□□ -0.17
SQSTM1-206ENST00000466342 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.01□□□□□ -0.177e-6■■□□□ 13.7
SQSTM1-206ENST00000466342 ZNF318Q5VUA4 2279 aa14.01□□□□□ -0.17
SQSTM1-206ENST00000466342 DNAJC25-GNG10A0A024R161 153 aa14□□□□□ -0.17
SQSTM1-206ENST00000466342 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14□□□□□ -0.17
SQSTM1-206ENST00000466342 ZNF213O14771 459 aa14□□□□□ -0.17
SQSTM1-206ENST00000466342 LPXNO60711 386 aa14□□□□□ -0.17
SQSTM1-206ENST00000466342 PRDM1O75626 825 aa14□□□□□ -0.17
SQSTM1-206ENST00000466342 CABYRO75952 493 aa14□□□□□ -0.17
SQSTM1-206ENST00000466342 FGRP09769 529 aa14□□□□□ -0.17
SQSTM1-206ENST00000466342 PCP11498 1178 aaKnown RBP14□□□□□ -0.17
SQSTM1-206ENST00000466342 SSTR3P32745 418 aaPredicted RBP14□□□□□ -0.17
SQSTM1-206ENST00000466342 IMMTQ16891 758 aaKnown RBP14□□□□□ -0.17
SQSTM1-206ENST00000466342 NEDD1Q8NHV4 660 aa14□□□□□ -0.17
SQSTM1-206ENST00000466342 MAP4K1Q92918 833 aa14□□□□□ -0.17
SQSTM1-206ENST00000466342 SLC9A7Q96T83 725 aa14□□□□□ -0.17
SQSTM1-206ENST00000466342 LSG1Q9H089 658 aaKnown RBP14□□□□□ -0.17
SQSTM1-206ENST00000466342 TRPV6Q9H1D0 765 aa14□□□□□ -0.17
SQSTM1-206ENST00000466342 FBXO28Q9NVF7 368 aa14□□□□□ -0.17
SQSTM1-206ENST00000466342 CDKN2AIPQ9NXV6 580 aaPredicted RBP14□□□□□ -0.17
SQSTM1-206ENST00000466342 MTMR4Q9NYA4 1195 aa14□□□□□ -0.17
SQSTM1-206ENST00000466342 PPP1R9AQ9ULJ8 1098 aa14□□□□□ -0.17
SQSTM1-206ENST00000466342 U3KPZ7 1027 aaPredicted RBP14□□□□□ -0.17
SQSTM1-206ENST00000466342 USP34Q70CQ2 3546 aa14□□□□□ -0.17
SQSTM1-206ENST00000466342 PTPRSQ13332 1948 aa14□□□□□ -0.17
SQSTM1-206ENST00000466342 PLIN4Q96Q06 1357 aa13.99□□□□□ -0.17
SQSTM1-206ENST00000466342 GRIN2DO15399 1336 aa13.99□□□□□ -0.17
SQSTM1-206ENST00000466342 KIF28PB7ZC32 967 aa13.99□□□□□ -0.17
SQSTM1-206ENST00000466342 ORC4O43929 436 aa13.99□□□□□ -0.17
SQSTM1-206ENST00000466342 RAD21O60216 631 aa13.99□□□□□ -0.17
SQSTM1-206ENST00000466342 B4GALT4O60513 344 aa13.99□□□□□ -0.17
SQSTM1-206ENST00000466342 TSPY3P0CV98 308 aa13.99□□□□□ -0.17
SQSTM1-206ENST00000466342 TSPY8P0CW00 308 aa13.99□□□□□ -0.17
SQSTM1-206ENST00000466342 BEX3Q00994 111 aa13.99□□□□□ -0.17
SQSTM1-206ENST00000466342 PPP4R3BQ5MIZ7 849 aa13.99□□□□□ -0.17
SQSTM1-206ENST00000466342 FAM83BQ5T0W9 1011 aa13.99□□□□□ -0.17
SQSTM1-206ENST00000466342 CXCL17Q6UXB2 119 aa13.99□□□□□ -0.17
SQSTM1-206ENST00000466342 TBC1D10CQ8IV04 446 aa13.99□□□□□ -0.17
SQSTM1-206ENST00000466342 PRPF38AQ8NAV1 312 aaKnown RBP13.99□□□□□ -0.17
SQSTM1-206ENST00000466342 REPS2Q8NFH8 660 aa13.99□□□□□ -0.17
SQSTM1-206ENST00000466342 STAG1Q8WVM7 1258 aa13.99□□□□□ -0.17
SQSTM1-206ENST00000466342 CEP95Q96GE4 821 aa13.99□□□□□ -0.17
SQSTM1-206ENST00000466342 UBE2ZQ9H832 354 aaPredicted RBP13.99□□□□□ -0.17
SQSTM1-206ENST00000466342 ANO2Q9NQ90 1003 aa13.99□□□□□ -0.17
SQSTM1-206ENST00000466342 POTEB3A0JP26 581 aa13.98□□□□□ -0.17
SQSTM1-206ENST00000466342 ST18O60284 1047 aa13.98□□□□□ -0.17
SQSTM1-206ENST00000466342 ARHGEF15O94989 841 aa13.98□□□□□ -0.17
SQSTM1-206ENST00000466342 TTLL1O95922 423 aa13.98□□□□□ -0.17
SQSTM1-206ENST00000466342 ACTN1P12814 892 aa13.98□□□□□ -0.17
SQSTM1-206ENST00000466342 TFAP4Q01664 338 aa13.98□□□□□ -0.17
SQSTM1-206ENST00000466342 LEXMQ3ZCV2 418 aa13.98□□□□□ -0.17
SQSTM1-206ENST00000466342 POTEBQ6S5H4 581 aa13.98□□□□□ -0.17
SQSTM1-206ENST00000466342 MFSD6Q6ZSS7 791 aa13.98□□□□□ -0.17
SQSTM1-206ENST00000466342 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.98□□□□□ -0.17
SQSTM1-206ENST00000466342 RNF41Q9H4P4 317 aaPredicted RBP13.98□□□□□ -0.17
SQSTM1-206ENST00000466342 INCENPQ9NQS7 918 aa13.98□□□□□ -0.17
SQSTM1-206ENST00000466342 RBM8AQ9Y5S9 174 aaKnown RBP13.98□□□□□ -0.17
SQSTM1-206ENST00000466342 NEDD4P46934 1319 aa13.97□□□□□ -0.17
SQSTM1-206ENST00000466342 DCXO43602 365 aa13.97□□□□□ -0.17
SQSTM1-206ENST00000466342 NDUFB10O96000 172 aa13.97□□□□□ -0.17
SQSTM1-206ENST00000466342 DEFB128Q7Z7B8 93 aa13.97□□□□□ -0.17
SQSTM1-206ENST00000466342 GMCL1P1Q8NEA9 526 aa13.97□□□□□ -0.17
SQSTM1-206ENST00000466342 SLF1Q9BQI6 1058 aa13.97□□□□□ -0.17
SQSTM1-206ENST00000466342 TOMM22Q9NS69 142 aa13.97□□□□□ -0.17
SQSTM1-206ENST00000466342 TRIOO75962 3097 aa13.97□□□□□ -0.17
SQSTM1-206ENST00000466342 TET1Q8NFU7 2136 aa13.97□□□□□ -0.17
SQSTM1-206ENST00000466342 TRIP12Q14669 1992 aaPredicted RBP13.96□□□□□ -0.17
SQSTM1-206ENST00000466342 CFAP54Q96N23 3096 aa13.96□□□□□ -0.17
SQSTM1-206ENST00000466342 TSPY2A6NKD2 308 aa13.96□□□□□ -0.17
SQSTM1-206ENST00000466342 RANBP6O60518 1105 aaKnown RBP13.96□□□□□ -0.17
SQSTM1-206ENST00000466342 CYP21A2P08686 494 aa13.96□□□□□ -0.17
SQSTM1-206ENST00000466342 IL9P15248 144 aa13.96□□□□□ -0.17
SQSTM1-206ENST00000466342 NT5C2P49902 561 aa13.96□□□□□ -0.17
SQSTM1-206ENST00000466342 FOXK2Q01167 660 aa13.96□□□□□ -0.17
SQSTM1-206ENST00000466342 TNFAIP2Q03169 654 aa13.96□□□□□ -0.17
SQSTM1-206ENST00000466342 RRP12Q5JTH9 1297 aaKnown RBP13.96□□□□□ -0.17
SQSTM1-206ENST00000466342 ARMCX2Q7L311 632 aa13.96□□□□□ -0.17
SQSTM1-206ENST00000466342 HERC6Q8IVU3 1022 aa13.96□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms