RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 MYO7AQ13402 2215 aa11.66□□□□□ -0.54
USP39-212ENST00000465514 NLRC5Q86WI3 1866 aa11.66□□□□□ -0.54
USP39-212ENST00000465514 TNKSO95271 1327 aa11.65□□□□□ -0.54
USP39-212ENST00000465514 LCTP09848 1927 aa11.65□□□□□ -0.54
USP39-212ENST00000465514 MYH4Q9Y623 1939 aa11.65□□□□□ -0.54
USP39-212ENST00000465514 C19orf67A6NJJ6 358 aa11.65□□□□□ -0.54
USP39-212ENST00000465514 RAD21O60216 631 aa11.65□□□□□ -0.54
USP39-212ENST00000465514 RFC2P35250 354 aa11.65□□□□□ -0.54
USP39-212ENST00000465514 SLC4A3P48751 1232 aa11.65□□□□□ -0.54
USP39-212ENST00000465514 TCF15Q12870 199 aa11.65□□□□□ -0.54
USP39-212ENST00000465514 UBE3CQ15386 1083 aa11.65□□□□□ -0.54
USP39-212ENST00000465514 FAM83BQ5T0W9 1011 aa11.65□□□□□ -0.54
USP39-212ENST00000465514 AMOTL1Q8IY63 956 aa11.65□□□□□ -0.54
USP39-212ENST00000465514 NEK9Q8TD19 979 aa11.65□□□□□ -0.54
USP39-212ENST00000465514 CCDC17Q96LX7 622 aa11.65□□□□□ -0.54
USP39-212ENST00000465514 MUTYHQ9UIF7 546 aa11.65□□□□□ -0.54
USP39-212ENST00000465514 GNEQ9Y223 722 aaKnown RBP11.65□□□□□ -0.54
USP39-212ENST00000465514 SLC4A4Q9Y6R1 1079 aa11.65□□□□□ -0.54
USP39-212ENST00000465514 GREB1LQ9C091 1923 aaPredicted RBP11.64□□□□□ -0.55
USP39-212ENST00000465514 WDR87Q6ZQQ6 2873 aa11.64□□□□□ -0.55
USP39-212ENST00000465514 SMARCA5O60264 1052 aaPredicted RBP11.64□□□□□ -0.55
USP39-212ENST00000465514 ZEB2O60315 1214 aa11.64□□□□□ -0.55
USP39-212ENST00000465514 BAIAP3O94812 1187 aa11.64□□□□□ -0.55
USP39-212ENST00000465514 SUPT20HL2P0C7V6 817 aa11.64□□□□□ -0.55
USP39-212ENST00000465514 EEF2P13639 858 aaKnown RBP11.64□□□□□ -0.55
USP39-212ENST00000465514 IRS1P35568 1242 aa11.64□□□□□ -0.55
USP39-212ENST00000465514 KCNJ6P48051 423 aa11.64□□□□□ -0.55
USP39-212ENST00000465514 ZSCAN25Q6NSZ9 544 aa11.64□□□□□ -0.55
USP39-212ENST00000465514 C16orf86Q6ZW13 317 aa11.64□□□□□ -0.55
USP39-212ENST00000465514 ADHFE1Q8IWW8 467 aa11.64□□□□□ -0.55
USP39-212ENST00000465514 ANKRD35Q8N283 1001 aa11.64□□□□□ -0.55
USP39-212ENST00000465514 DDRGK1Q96HY6 314 aa11.64□□□□□ -0.55
USP39-212ENST00000465514 TGS1Q96RS0 853 aaKnown RBP11.64□□□□□ -0.55
USP39-212ENST00000465514 ZBED2Q9BTP6 218 aa11.64□□□□□ -0.55
USP39-212ENST00000465514 LRRCC1Q9C099 1032 aa11.64□□□□□ -0.55
USP39-212ENST00000465514 AP5M1Q9H0R1 490 aa11.64□□□□□ -0.55
USP39-212ENST00000465514 PRKAG3Q9UGI9 489 aa11.64□□□□□ -0.55
USP39-212ENST00000465514 RCAN3Q9UKA8 241 aa11.64□□□□□ -0.55
USP39-212ENST00000465514 EPG5Q9HCE0 2579 aa11.63□□□□□ -0.55
USP39-212ENST00000465514 DYNC1LI2O43237 492 aaPredicted RBP11.63□□□□□ -0.55
USP39-212ENST00000465514 ERVK-21P61565 698 aa11.63□□□□□ -0.55
USP39-212ENST00000465514 WDR5P61964 334 aaKnown RBP11.63□□□□□ -0.55
USP39-212ENST00000465514 C20orf194Q5TEA3 1177 aa11.63□□□□□ -0.55
USP39-212ENST00000465514 CTR9Q6PD62 1173 aa11.63□□□□□ -0.55
USP39-212ENST00000465514 SLF1Q9BQI6 1058 aa11.63□□□□□ -0.55
USP39-212ENST00000465514 UPF3BQ9BZI7 483 aaKnown RBP11.63□□□□□ -0.55
USP39-212ENST00000465514 PUS7LQ9H0K6 701 aaKnown RBP11.63□□□□□ -0.55
USP39-212ENST00000465514 KANSL2Q9H9L4 492 aa11.63□□□□□ -0.55
USP39-212ENST00000465514 GOPCQ9HD26 462 aa11.63□□□□□ -0.55
USP39-212ENST00000465514 FAM50BQ9Y247 325 aa11.63□□□□□ -0.55
USP39-212ENST00000465514 MICAL3Q7RTP6 2002 aa11.62□□□□□ -0.55
USP39-212ENST00000465514 LINC01553A4QN01 128 aa11.62□□□□□ -0.55
USP39-212ENST00000465514 IQCF3P0C7M6 154 aa11.62□□□□□ -0.55
USP39-212ENST00000465514 SMPD1P17405 629 aa11.62□□□□□ -0.55
USP39-212ENST00000465514 DEFB103AP81534 67 aa11.62□□□□□ -0.55
USP39-212ENST00000465514 CNTN2Q02246 1040 aa11.62□□□□□ -0.55
USP39-212ENST00000465514 HERC4Q5GLZ8 1057 aaPredicted RBP11.62□□□□□ -0.55
USP39-212ENST00000465514 EP400NLQ6ZTU2 488 aa11.62□□□□□ -0.55
USP39-212ENST00000465514 CPXCR1Q8N123 301 aa11.62□□□□□ -0.55
USP39-212ENST00000465514 NUP88Q99567 741 aaPredicted RBP11.62□□□□□ -0.55
USP39-212ENST00000465514 PRRX2Q99811 253 aa11.62□□□□□ -0.55
USP39-212ENST00000465514 SSUH2Q9Y2M2 353 aa11.62□□□□□ -0.55
USP39-212ENST00000465514 DDX49Q9Y6V7 483 aaKnown RBP11.62□□□□□ -0.55
USP39-212ENST00000465514 GVINP1Q7Z2Y8 2422 aa11.61□□□□□ -0.55
USP39-212ENST00000465514 DMXL1Q9Y485 3027 aa11.61□□□□□ -0.55
USP39-212ENST00000465514 TMEM63BQ5T3F8 832 aa11.61□□□□□ -0.55
USP39-212ENST00000465514 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.61□□□□□ -0.55
USP39-212ENST00000465514 RETREG2Q8NC44 543 aa11.61□□□□□ -0.55
USP39-212ENST00000465514 PPP1R13LQ8WUF5 828 aa11.61□□□□□ -0.55
USP39-212ENST00000465514 STRBPQ96SI9 672 aaKnown RBP11.61□□□□□ -0.55
USP39-212ENST00000465514 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.61□□□□□ -0.55
USP39-212ENST00000465514 ECHDC1Q9NTX5 307 aa11.61□□□□□ -0.55
USP39-212ENST00000465514 COL4A6Q14031 1691 aa11.61□□□□□ -0.55
USP39-212ENST00000465514 CACNA1GO43497 2377 aa11.6□□□□□ -0.55
USP39-212ENST00000465514 RALGAPA2Q2PPJ7 1873 aa11.6□□□□□ -0.55
USP39-212ENST00000465514 TMEM221A6NGB7 291 aa11.6□□□□□ -0.55
USP39-212ENST00000465514 GSG1L2A8MUP6 293 aa11.6□□□□□ -0.55
USP39-212ENST00000465514 M0R296 226 aa11.6□□□□□ -0.55
USP39-212ENST00000465514 ATP2A1O14983 1001 aa11.6□□□□□ -0.55
USP39-212ENST00000465514 SBK1Q52WX2 424 aa11.6□□□□□ -0.55
USP39-212ENST00000465514 FAM47CQ5HY64 1035 aa11.6□□□□□ -0.55
USP39-212ENST00000465514 ERMP1Q7Z2K6 904 aa11.6□□□□□ -0.55
USP39-212ENST00000465514 BMP8AQ7Z5Y6 402 aa11.6□□□□□ -0.55
USP39-212ENST00000465514 RNF135Q8IUD6 432 aa11.6□□□□□ -0.55
USP39-212ENST00000465514 SUGP1Q8IWZ8 645 aaKnown RBP11.6□□□□□ -0.55
USP39-212ENST00000465514 STK11IPQ8N1F8 1099 aa11.6□□□□□ -0.55
USP39-212ENST00000465514 FBXO22Q8NEZ5 403 aa11.6□□□□□ -0.55
USP39-212ENST00000465514 SPDYE1Q8NFV5 336 aaPredicted RBP11.6□□□□□ -0.55
USP39-212ENST00000465514 EDAQ92838 391 aa11.6□□□□□ -0.55
USP39-212ENST00000465514 PBXIP1Q96AQ6 731 aa11.6□□□□□ -0.55
USP39-212ENST00000465514 PABPC5Q96DU9 382 aaKnown RBP11.6□□□□□ -0.55
USP39-212ENST00000465514 MRPL38Q96DV4 380 aaKnown RBP11.6□□□□□ -0.55
USP39-212ENST00000465514 C17orf80Q9BSJ5 609 aa11.6□□□□□ -0.55
USP39-212ENST00000465514 RAVER2Q9HCJ3 691 aaKnown RBP11.6□□□□□ -0.55
USP39-212ENST00000465514 ALG13Q9NP73 1137 aaKnown RBP11.6□□□□□ -0.55
USP39-212ENST00000465514 PDGFCQ9NRA1 345 aa11.6□□□□□ -0.55
USP39-212ENST00000465514 HOMER2Q9NSB8 354 aa11.6□□□□□ -0.55
USP39-212ENST00000465514 ARPP21Q9UBL0 812 aaPredicted RBP11.6□□□□□ -0.55
USP39-212ENST00000465514 DNAH14Q0VDD8 3507 aa11.6□□□□□ -0.55
USP39-212ENST00000465514 KMT2BQ9UMN6 2715 aaPredicted RBP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms