RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 LRRC10BA6NIK2 292 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 M0R2C6 588 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 ZRANB2O95218 330 aaKnown RBP eCLIP7.73□□□□□ -1.17
SYNE1-216ENST00000461872 ZNF174Q15697 407 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 RHOT2Q8IXI1 618 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 LY9Q9HBG7 655 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 TXLNGQ9NUQ3 528 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 SPATA24Q86W54 205 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 LARP4BQ92615 738 aaKnown RBP7.73□□□□□ -1.17
SYNE1-216ENST00000461872 ERGIC2Q96RQ1 377 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 TMX1Q9H3N1 280 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 KDM3BQ7LBC6 1761 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 SUN1O94901 812 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 KRT71Q3SY84 523 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 CABP7Q86V35 215 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 H2AFZP0C0S5 128 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 STAT1P42224 750 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 PDE6CP51160 858 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 SARNPP82979 210 aaKnown RBP7.73□□□□□ -1.17
SYNE1-216ENST00000461872 H2AFVQ71UI9 128 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 CNOT6LQ96LI5 555 aaKnown RBP7.73□□□□□ -1.17
SYNE1-216ENST00000461872 FUT8Q9BYC5 575 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 ANAPC4Q9UJX5 808 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 LTN1O94822 1766 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 MATR3P43243 847 aaKnown RBP eCLIP7.73□□□□□ -1.17
SYNE1-216ENST00000461872 RFX5P48382 616 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-216ENST00000461872 TCERG1LQ5VWI1 586 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 TC2NQ8N9U0 490 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 ANKIB1Q9P2G1 1089 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 KLHL14Q9P2G3 628 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 FER1L4A9Z1Z3 1794 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 CDKAL1Q5VV42 579 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 UNC13DQ70J99 1090 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 CHST3Q7LGC8 479 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 DAGLBQ8NCG7 672 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 AFDNP55196 1824 aaKnown RBP7.73□□□□□ -1.17
SYNE1-216ENST00000461872 ATP1A3P13637 1013 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 PDIA5Q14554 519 aa7.73□□□□□ -1.17
SYNE1-216ENST00000461872 ZKSCAN8Q15776 578 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-216ENST00000461872 TLR7Q9NYK1 1049 aaKnown RBP7.73□□□□□ -1.17
SYNE1-216ENST00000461872 ESYT2A0FGR8 921 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 TBC1D8O95759 1140 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 LMNAP02545 664 aaKnown RBP7.72□□□□□ -1.17
SYNE1-216ENST00000461872 IKQ13123 557 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-216ENST00000461872 NHEJ1Q9H9Q4 299 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-216ENST00000461872 RGS16O15492 202 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-216ENST00000461872 MB21D1Q8N884 522 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 COL4A3BPQ9Y5P4 624 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 PFKFB3Q16875 520 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-216ENST00000461872 C6orf118Q5T5N4 469 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 PAPD7Q5XG87 772 aaKnown RBP7.72□□□□□ -1.17
SYNE1-216ENST00000461872 INTS8Q75QN2 995 aaKnown RBP7.72□□□□□ -1.17
SYNE1-216ENST00000461872 PHLDB2Q86SQ0 1253 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 SUGP1Q8IWZ8 645 aaKnown RBP7.72□□□□□ -1.17
SYNE1-216ENST00000461872 FBXO41Q8TF61 875 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 IFT81Q8WYA0 676 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 FAM177BA6PVY3 158 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 PROSER3Q2NL68 480 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 GRAMD1AQ96CP6 724 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 ZHX3Q9H4I2 956 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 ATP8B3O60423 1300 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 BEND6Q5SZJ8 279 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-216ENST00000461872 KLHDC4Q8TBB5 520 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.72□□□□□ -1.17
SYNE1-216ENST00000461872 SENP1Q9P0U3 644 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 PCDHB13Q9Y5F0 798 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 CAPN7Q9Y6W3 813 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 EIF3HO15372 352 aaKnown RBP eCLIP7.72□□□□□ -1.17
SYNE1-216ENST00000461872 BPIFB4P59827 614 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 EDRF1Q3B7T1 1238 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 CCDC82Q8N4S0 544 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 SMC6Q96SB8 1091 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 HIP1RO75146 1068 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 RHOBTB3O94955 611 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 AOC3Q16853 763 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 LIN9Q5TKA1 542 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 AGBL2Q5U5Z8 902 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 IQCGQ9H095 443 aaKnown RBP7.72□□□□□ -1.17
SYNE1-216ENST00000461872 GOPCQ9HD26 462 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 SEPT11Q9NVA2 429 aaKnown RBP7.72□□□□□ -1.17
SYNE1-216ENST00000461872 L1RE1Q9UN81 338 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 SNX16P57768 344 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 FAM26FQ5R3K3 315 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 SHC4Q6S5L8 630 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 NDST4Q9H3R1 872 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 CCDC87Q9NVE4 849 aa7.72□□□□□ -1.17
SYNE1-216ENST00000461872 FBXO2Q9UK22 296 aaPredicted RBP7.72□□□□□ -1.17
SYNE1-216ENST00000461872 KIF11P52732 1056 aa7.71□□□□□ -1.17
SYNE1-216ENST00000461872 IRX5P78411 483 aaPredicted RBP7.71□□□□□ -1.17
SYNE1-216ENST00000461872 TBX2Q13207 712 aaPredicted RBP7.71□□□□□ -1.17
SYNE1-216ENST00000461872 FAM13AO94988 1023 aa7.71□□□□□ -1.17
SYNE1-216ENST00000461872 NEFHP12036 1026 aa7.71□□□□□ -1.17
SYNE1-216ENST00000461872 DPYDQ12882 1025 aa7.71□□□□□ -1.17
SYNE1-216ENST00000461872 NBPF5PQ86XG9 351 aaPredicted RBP7.71□□□□□ -1.17
SYNE1-216ENST00000461872 TRIM42Q8IWZ5 723 aa7.71□□□□□ -1.17
SYNE1-216ENST00000461872 RPGRQ92834 1020 aaKnown RBP7.71□□□□□ -1.17
SYNE1-216ENST00000461872 ATP6V1G3Q96LB4 118 aa7.71□□□□□ -1.17
SYNE1-216ENST00000461872 CCDC17Q96LX7 622 aa7.71□□□□□ -1.17
SYNE1-216ENST00000461872 MIS12Q9H081 205 aa7.71□□□□□ -1.17
SYNE1-216ENST00000461872 LGSNQ5TDP6 509 aa7.71□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms