RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 MYH7BA7E2Y1 1941 aa13.73□□□□□ -0.21
VPS52-213ENST00000461743 PTPDC1A2A3K4 754 aa13.73□□□□□ -0.21
VPS52-213ENST00000461743 GOLGA8AA7E2F4 631 aa13.73□□□□□ -0.21
VPS52-213ENST00000461743 GOLGA8BA8MQT2 603 aa13.73□□□□□ -0.21
VPS52-213ENST00000461743 hCG_1984214I3L0E3 225 aa13.73□□□□□ -0.21
VPS52-213ENST00000461743 TAL1P17542 331 aaPredicted RBP13.73□□□□□ -0.21
VPS52-213ENST00000461743 METAP2P50579 478 aaKnown RBP eCLIP13.73□□□□□ -0.21
VPS52-213ENST00000461743 RPS6P62753 249 aaKnown RBP13.73□□□□□ -0.21
VPS52-213ENST00000461743 MLLT1Q03111 559 aaPredicted RBP13.73□□□□□ -0.21
VPS52-213ENST00000461743 BAATQ14032 418 aaPredicted RBP13.73□□□□□ -0.21
VPS52-213ENST00000461743 SLC30A10Q6XR72 485 aa13.73□□□□□ -0.21
VPS52-213ENST00000461743 ZNF713Q8N859 430 aaPredicted RBP13.73□□□□□ -0.21
VPS52-213ENST00000461743 TRPV1Q8NER1 839 aa13.73□□□□□ -0.21
VPS52-213ENST00000461743 BRF1Q92994 677 aa13.73□□□□□ -0.21
VPS52-213ENST00000461743 VAT1LQ9HCJ6 419 aa13.73□□□□□ -0.21
VPS52-213ENST00000461743 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.73□□□□□ -0.21
VPS52-213ENST00000461743 RBM27Q9P2N5 1060 aaKnown RBP13.73□□□□□ -0.21
VPS52-213ENST00000461743 BRPF3Q9ULD4 1205 aa13.73□□□□□ -0.21
VPS52-213ENST00000461743 PCDHA1Q9Y5I3 950 aa13.73□□□□□ -0.21
VPS52-213ENST00000461743 DNAH12Q6ZR08 3092 aa13.72□□□□□ -0.21
VPS52-213ENST00000461743 PPP1R11O60927 126 aaPredicted RBP13.72□□□□□ -0.21
VPS52-213ENST00000461743 FARP2O94887 1054 aaPredicted RBP13.72□□□□□ -0.21
VPS52-213ENST00000461743 PLEKHA8P1O95397 391 aa13.72□□□□□ -0.21
VPS52-213ENST00000461743 AKR1A1P14550 325 aa13.72□□□□□ -0.21
VPS52-213ENST00000461743 CPA1P15085 419 aa13.72□□□□□ -0.21
VPS52-213ENST00000461743 EN2P19622 333 aaPredicted RBP13.72□□□□□ -0.21
VPS52-213ENST00000461743 RXRAP19793 462 aa13.72□□□□□ -0.21
VPS52-213ENST00000461743 ALDH5A1P51649 535 aaPredicted RBP13.72□□□□□ -0.21
VPS52-213ENST00000461743 HSD17B4P51659 736 aa13.72□□□□□ -0.21
VPS52-213ENST00000461743 CNTN2Q02246 1040 aa13.72□□□□□ -0.21
VPS52-213ENST00000461743 UBE2Q1Q7Z7E8 422 aa13.72□□□□□ -0.21
VPS52-213ENST00000461743 CCDC144CPQ8IYA2 1237 aa13.72□□□□□ -0.21
VPS52-213ENST00000461743 SRBD1Q8N5C6 995 aaKnown RBP13.72□□□□□ -0.21
VPS52-213ENST00000461743 ALDH8A1Q9H2A2 487 aaPredicted RBP13.72□□□□□ -0.21
VPS52-213ENST00000461743 VTA1Q9NP79 307 aa13.72□□□□□ -0.21
VPS52-213ENST00000461743 ASTN1O14525 1302 aa13.71□□□□□ -0.21
VPS52-213ENST00000461743 SOWAHBA6NEL2 793 aa13.71□□□□□ -0.21
VPS52-213ENST00000461743 SNAI1O95863 264 aaPredicted RBP13.71□□□□□ -0.21
VPS52-213ENST00000461743 TFRCP02786 760 aaKnown RBP13.71□□□□□ -0.21
VPS52-213ENST00000461743 ZNF865P0CJ78 1059 aaPredicted RBP13.71□□□□□ -0.21
VPS52-213ENST00000461743 EDNRBP24530 442 aa13.71□□□□□ -0.21
VPS52-213ENST00000461743 CNGA1P29973 690 aa13.71□□□□□ -0.21
VPS52-213ENST00000461743 APOBRQ0VD83 1088 aa13.71□□□□□ -0.21
VPS52-213ENST00000461743 LHX8Q68G74 356 aa13.71□□□□□ -0.21
VPS52-213ENST00000461743 PPP1R18Q6NYC8 613 aa13.71□□□□□ -0.21
VPS52-213ENST00000461743 CEP290O15078 2479 aa13.71□□□□□ -0.21
VPS52-213ENST00000461743 RARBP10826 455 aa13.7□□□□□ -0.22
VPS52-213ENST00000461743 CALML3P27482 149 aa13.7□□□□□ -0.22
VPS52-213ENST00000461743 ACVR2BQ13705 512 aa13.7□□□□□ -0.22
VPS52-213ENST00000461743 TOB2Q14106 344 aaPredicted RBP13.7□□□□□ -0.22
VPS52-213ENST00000461743 ANKRD1Q15327 319 aa13.7□□□□□ -0.22
VPS52-213ENST00000461743 ZNF274Q96GC6 653 aaPredicted RBP13.7□□□□□ -0.22
VPS52-213ENST00000461743 KATNBL1Q9H079 304 aa13.7□□□□□ -0.22
VPS52-213ENST00000461743 ZHX1Q9UKY1 873 aaPredicted RBP13.7□□□□□ -0.22
VPS52-213ENST00000461743 FAM184BQ9ULE4 1060 aa13.7□□□□□ -0.22
VPS52-213ENST00000461743 FRMPD4Q14CM0 1322 aa13.69□□□□□ -0.22
VPS52-213ENST00000461743 DNM1LO00429 736 aa13.69□□□□□ -0.22
VPS52-213ENST00000461743 OPLAHO14841 1288 aa13.69□□□□□ -0.22
VPS52-213ENST00000461743 FUT2Q10981 343 aa13.69□□□□□ -0.22
VPS52-213ENST00000461743 RAB11FIP4Q86YS3 637 aa13.69□□□□□ -0.22
VPS52-213ENST00000461743 ARRDC4Q8NCT1 418 aa13.69□□□□□ -0.22
VPS52-213ENST00000461743 IL27Q8NEV9 243 aa13.69□□□□□ -0.22
VPS52-213ENST00000461743 SYTL5Q8TDW5 730 aaPredicted RBP13.69□□□□□ -0.22
VPS52-213ENST00000461743 NSUN6Q8TEA1 469 aaKnown RBP13.69□□□□□ -0.22
VPS52-213ENST00000461743 IWS1Q96ST2 819 aa13.69□□□□□ -0.22
VPS52-213ENST00000461743 UPF3BQ9BZI7 483 aaKnown RBP13.69□□□□□ -0.22
VPS52-213ENST00000461743 PDRG1Q9NUG6 133 aa13.69□□□□□ -0.22
VPS52-213ENST00000461743 NAP1L2Q9ULW6 460 aaPredicted RBP13.69□□□□□ -0.22
VPS52-213ENST00000461743 DOCK5Q9H7D0 1870 aa13.68□□□□□ -0.22
VPS52-213ENST00000461743 GCOM1H8Y6P7 765 aaPredicted RBP13.68□□□□□ -0.22
VPS52-213ENST00000461743 PIK3CDO00329 1044 aa13.68□□□□□ -0.22
VPS52-213ENST00000461743 DUSP11O75319 330 aaKnown RBP13.68□□□□□ -0.22
VPS52-213ENST00000461743 CFBP00751 764 aa13.68□□□□□ -0.22
VPS52-213ENST00000461743 POLR2MP0CAP2 368 aa13.68□□□□□ -0.22
VPS52-213ENST00000461743 CDC27P30260 824 aa13.68□□□□□ -0.22
VPS52-213ENST00000461743 PDE4DQ08499 809 aa13.68□□□□□ -0.22
VPS52-213ENST00000461743 NECAB2Q7Z6G3 386 aa13.68□□□□□ -0.22
VPS52-213ENST00000461743 HTATIP2Q9BUP3 242 aa13.68□□□□□ -0.22
VPS52-213ENST00000461743 GLT8D2Q9H1C3 349 aa13.68□□□□□ -0.22
VPS52-213ENST00000461743 FAM217BQ9NTX9 383 aaPredicted RBP13.68□□□□□ -0.22
VPS52-213ENST00000461743 SCN10AQ9Y5Y9 1956 aa13.67□□□□□ -0.22
VPS52-213ENST00000461743 KBTBD13C9JR72 458 aa13.67□□□□□ -0.22
VPS52-213ENST00000461743 SEC24BO95487 1268 aa13.67□□□□□ -0.22
VPS52-213ENST00000461743 IFNAR1P17181 557 aa13.67□□□□□ -0.22
VPS52-213ENST00000461743 CST5P28325 142 aaPredicted RBP13.67□□□□□ -0.22
VPS52-213ENST00000461743 PDIA3P30101 505 aaKnown RBP13.67□□□□□ -0.22
VPS52-213ENST00000461743 CCDC144BQ3MJ40 725 aa13.67□□□□□ -0.22
VPS52-213ENST00000461743 PRAMEF19Q5SWL8 479 aa13.67□□□□□ -0.22
VPS52-213ENST00000461743 RNF180Q86T96 592 aa13.67□□□□□ -0.22
VPS52-213ENST00000461743 CMTR1Q8N1G2 835 aaKnown RBP13.67□□□□□ -0.22
VPS52-213ENST00000461743 CUL5Q93034 780 aa13.67□□□□□ -0.22
VPS52-213ENST00000461743 RMDN3Q96TC7 470 aa13.67□□□□□ -0.22
VPS52-213ENST00000461743 RNF26Q9BY78 433 aaPredicted RBP13.67□□□□□ -0.22
VPS52-213ENST00000461743 UPF3AQ9H1J1 476 aaKnown RBP13.67□□□□□ -0.22
VPS52-213ENST00000461743 UPF2Q9HAU5 1272 aaKnown RBP13.67□□□□□ -0.22
VPS52-213ENST00000461743 XPNPEP3Q9NQH7 507 aa13.67□□□□□ -0.22
VPS52-213ENST00000461743 PXMP2Q9NR77 195 aa13.67□□□□□ -0.22
VPS52-213ENST00000461743 RBM47A0AV96 593 aaKnown RBP13.66□□□□□ -0.22
VPS52-213ENST00000461743 NKRFO15226 690 aaKnown RBP eCLIP13.66□□□□□ -0.22
VPS52-213ENST00000461743 COL6A1P12109 1028 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms