RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 MARCKSP29966 332 aaPredicted RBP6.85□□□□□ -1.31
VPS13D-202ENST00000460333 GNA11P29992 359 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 R3HDM1Q15032 1099 aaKnown RBP6.85□□□□□ -1.31
VPS13D-202ENST00000460333 PWP2Q15269 919 aaKnown RBP6.85□□□□□ -1.31
VPS13D-202ENST00000460333 CC2D1AQ6P1N0 951 aaPredicted RBP6.85□□□□□ -1.31
VPS13D-202ENST00000460333 PTF1AQ7RTS3 328 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 PODNQ7Z5L7 613 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 IGDCC4Q8TDY8 1250 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 CALML4Q96GE6 196 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 FOXP1Q9H334 677 aaPredicted RBP6.85□□□□□ -1.31
VPS13D-202ENST00000460333 HAUS4Q9H6D7 363 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 C6orf50Q9HD87 102 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 KCNJ6P48051 423 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 SLC4A8Q2Y0W8 1093 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 GALNT17Q6IS24 598 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 NOSTRINQ8IVI9 506 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 TRIML1Q8N9V2 468 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 USP28Q96RU2 1077 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 USP40Q9NVE5 1235 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 TJP1Q07157 1748 aa6.85□□□□□ -1.31
VPS13D-202ENST00000460333 CCDC160A6NGH7 325 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 ZBTB7AO95365 584 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 SLFN14P0C7P3 912 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 ANTXR2P58335 489 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 CFAP221Q4G0U5 840 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 FAM47AQ5JRC9 791 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 OTUD7BQ6GQQ9 843 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 HOMEZQ8IX15 550 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 USH1CQ9Y6N9 552 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 MYH3P11055 1940 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 SYNRGQ9UMZ2 1314 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 PRPF3O43395 683 aaKnown RBP6.84□□□□□ -1.31
VPS13D-202ENST00000460333 TM4SF1P30408 202 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 PPP4CP60510 307 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 KIF23Q02241 960 aaPredicted RBP6.84□□□□□ -1.31
VPS13D-202ENST00000460333 LRRC23Q53EV4 343 aaPredicted RBP6.84□□□□□ -1.31
VPS13D-202ENST00000460333 DALRD3Q5D0E6 543 aaKnown RBP6.84□□□□□ -1.31
VPS13D-202ENST00000460333 ALS2CLQ60I27 953 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 STYK1Q6J9G0 422 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 SAAL1Q96ER3 474 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 TCHPQ9BT92 498 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 GPHNQ9NQX3 736 aaPredicted RBP6.84□□□□□ -1.31
VPS13D-202ENST00000460333 LRRC4BQ9NT99 713 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 NRBP1Q9UHY1 535 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 SUFUQ9UMX1 484 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 WNK3Q9BYP7 1800 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 GLI3P10071 1580 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 POLRMTO00411 1230 aaKnown RBP6.84□□□□□ -1.31
VPS13D-202ENST00000460333 UBA7P41226 1012 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 PLA2G4DQ86XP0 818 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 PNMA1Q8ND90 353 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 TRIM58Q8NG06 486 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 NOX5Q96PH1 765 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 RIOK1Q9BRS2 568 aaKnown RBP6.84□□□□□ -1.31
VPS13D-202ENST00000460333 PPIP5K2O43314 1243 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 ACTN4O43707 911 aaKnown RBP6.84□□□□□ -1.31
VPS13D-202ENST00000460333 NOL3O60936 208 aaKnown RBP6.84□□□□□ -1.31
VPS13D-202ENST00000460333 PPP6R2O75170 966 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 NR1I2O75469 434 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 PRPF4BQ13523 1007 aaKnown RBP6.84□□□□□ -1.31
VPS13D-202ENST00000460333 PPP1R7Q15435 360 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 ARMC2Q8NEN0 867 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 CCDC17Q96LX7 622 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 KCNH3Q9ULD8 1083 aa6.84□□□□□ -1.31
VPS13D-202ENST00000460333 SMIM24O75264 130 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 FLOT1O75955 427 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 CMA1P23946 247 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 STAT6P42226 847 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 AFMP43652 599 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 DRP2Q13474 957 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 CASP8Q14790 479 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 DBN1Q16643 649 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 VWA3BQ502W6 1294 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 HEATR3Q7Z4Q2 680 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 CCDC63Q8NA47 563 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 P3H4Q92791 437 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 GLT8D2Q9H1C3 349 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 ZHX3Q9H4I2 956 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.83□□□□□ -1.32
VPS13D-202ENST00000460333 FAM184BQ9ULE4 1060 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 NFE2L3Q9Y4A8 694 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 TCP1P17987 556 aaKnown RBP6.83□□□□□ -1.32
VPS13D-202ENST00000460333 EPHB4P54760 987 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 NAPAP54920 295 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 ZBTB16Q05516 673 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 SLC39A14Q15043 492 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 DIXDC1Q155Q3 683 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 DOK7Q18PE1 504 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 TMEM132AQ24JP5 1023 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 CRY2Q49AN0 593 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 HSP90AA4PQ58FG1 418 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 RTKN2Q8IZC4 609 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 IQUBQ8NA54 791 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 CCDC110Q8TBZ0 833 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 SH3RF3Q8TEJ3 882 aaPredicted RBP6.83□□□□□ -1.32
VPS13D-202ENST00000460333 FERMT2Q96AC1 680 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 CFAP57Q96MR6 1250 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 DHX36Q9H2U1 1008 aaKnown RBP6.83□□□□□ -1.32
VPS13D-202ENST00000460333 BATF3Q9NR55 127 aa6.83□□□□□ -1.32
VPS13D-202ENST00000460333 MMP1P03956 469 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms