RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 DDAH1O94760 285 aa26.72■■□□□ 1.87
PTPN4-208ENST00000460289 SYN1P17600 705 aa26.72■■□□□ 1.87
PTPN4-208ENST00000460289 LIFRP42702 1097 aa26.72■■□□□ 1.87
PTPN4-208ENST00000460289 ACLYP53396 1101 aa26.72■■□□□ 1.87
PTPN4-208ENST00000460289 SNX17Q15036 470 aa26.72■■□□□ 1.87
PTPN4-208ENST00000460289 KCNA10Q16322 511 aa26.72■■□□□ 1.87
PTPN4-208ENST00000460289 TAPT1Q6NXT6 567 aa26.72■■□□□ 1.87
PTPN4-208ENST00000460289 NFXL1Q6ZNB6 911 aa26.72■■□□□ 1.87
PTPN4-208ENST00000460289 PPP4R2Q9NY27 417 aa26.72■■□□□ 1.87
PTPN4-208ENST00000460289 RBM27Q9P2N5 1060 aaKnown RBP26.72■■□□□ 1.87
PTPN4-208ENST00000460289 ATP11BQ9Y2G3 1177 aa26.72■■□□□ 1.87
PTPN4-208ENST00000460289 A0A1W2PQ45 241 aaPredicted RBP26.71■■□□□ 1.87
PTPN4-208ENST00000460289 A0A1W2PQY0 241 aa26.71■■□□□ 1.87
PTPN4-208ENST00000460289 CCDC69A6NI79 296 aa26.71■■□□□ 1.87
PTPN4-208ENST00000460289 SH2B2O14492 632 aaPredicted RBP26.71■■□□□ 1.87
PTPN4-208ENST00000460289 KIF5BP33176 963 aa26.71■■□□□ 1.87
PTPN4-208ENST00000460289 PDE4DQ08499 809 aa26.71■■□□□ 1.87
PTPN4-208ENST00000460289 CCSAPQ6IQ19 270 aaPredicted RBP26.71■■□□□ 1.87
PTPN4-208ENST00000460289 FBXO16Q8IX29 292 aaPredicted RBP26.71■■□□□ 1.87
PTPN4-208ENST00000460289 ZNF654Q8IZM8 581 aa26.71■■□□□ 1.87
PTPN4-208ENST00000460289 CTCFLQ8NI51 663 aaPredicted RBP26.71■■□□□ 1.87
PTPN4-208ENST00000460289 PRO3102Q9H379 93 aa26.71■■□□□ 1.87
PTPN4-208ENST00000460289 PRKAG2Q9UGJ0 569 aa26.71■■□□□ 1.87
PTPN4-208ENST00000460289 Q9Y3F1 56 aa26.71■■□□□ 1.87
PTPN4-208ENST00000460289 DDX49Q9Y6V7 483 aaKnown RBP26.71■■□□□ 1.87
PTPN4-208ENST00000460289 C11orf97A0A1B0GVM6 126 aaPredicted RBP26.7■■□□□ 1.86
PTPN4-208ENST00000460289 NKX3-2P78367 333 aa26.7■■□□□ 1.86
PTPN4-208ENST00000460289 TSGA10IPQ3SY00 556 aa26.7■■□□□ 1.86
PTPN4-208ENST00000460289 GNASQ5JWF2 1037 aa26.7■■□□□ 1.86
PTPN4-208ENST00000460289 NEK1Q96PY6 1258 aa26.7■■□□□ 1.86
PTPN4-208ENST00000460289 AP5M1Q9H0R1 490 aa26.7■■□□□ 1.86
PTPN4-208ENST00000460289 PDGFCQ9NRA1 345 aa26.7■■□□□ 1.86
PTPN4-208ENST00000460289 GNEQ9Y223 722 aaKnown RBP26.7■■□□□ 1.86
PTPN4-208ENST00000460289 PCDHA1Q9Y5I3 950 aa26.7■■□□□ 1.86
PTPN4-208ENST00000460289 CALM1P0DP23 149 aa26.69■■□□□ 1.86
PTPN4-208ENST00000460289 CALM2P0DP24 149 aa26.69■■□□□ 1.86
PTPN4-208ENST00000460289 CALM3P0DP25 149 aa26.69■■□□□ 1.86
PTPN4-208ENST00000460289 SMPD1P17405 629 aa26.69■■□□□ 1.86
PTPN4-208ENST00000460289 KRT32Q14532 448 aa26.69■■□□□ 1.86
PTPN4-208ENST00000460289 HOMER1Q86YM7 354 aa26.69■■□□□ 1.86
PTPN4-208ENST00000460289 TBC1D5Q92609 795 aa26.69■■□□□ 1.86
PTPN4-208ENST00000460289 PIGSQ96S52 555 aa26.69■■□□□ 1.86
PTPN4-208ENST00000460289 GDF15Q99988 308 aa26.69■■□□□ 1.86
PTPN4-208ENST00000460289 GPHNQ9NQX3 736 aaPredicted RBP26.69■■□□□ 1.86
PTPN4-208ENST00000460289 STARD7Q9NQZ5 370 aa26.69■■□□□ 1.86
PTPN4-208ENST00000460289 MAP3K20Q9NYL2 800 aaKnown RBP26.69■■□□□ 1.86
PTPN4-208ENST00000460289 PNMA6FA0A0J9YX94 578 aa26.68■■□□□ 1.86
PTPN4-208ENST00000460289 MYADML2A6NDP7 307 aa26.68■■□□□ 1.86
PTPN4-208ENST00000460289 EDNRBP24530 442 aa26.68■■□□□ 1.86
PTPN4-208ENST00000460289 SMARCA1P28370 1054 aa26.68■■□□□ 1.86
PTPN4-208ENST00000460289 BMP8BP34820 402 aa26.68■■□□□ 1.86
PTPN4-208ENST00000460289 GNAQP50148 359 aa26.68■■□□□ 1.86
PTPN4-208ENST00000460289 TLK2Q86UE8 772 aa26.68■■□□□ 1.86
PTPN4-208ENST00000460289 SAMD3Q8N6K7 520 aa26.68■■□□□ 1.86
PTPN4-208ENST00000460289 SYTL5Q8TDW5 730 aaPredicted RBP26.68■■□□□ 1.86
PTPN4-208ENST00000460289 NSUN6Q8TEA1 469 aaKnown RBP26.68■■□□□ 1.86
PTPN4-208ENST00000460289 GLT1D1Q96MS3 346 aa26.68■■□□□ 1.86
PTPN4-208ENST00000460289 LZTS2Q9BRK4 669 aa26.68■■□□□ 1.86
PTPN4-208ENST00000460289 DNAH12Q6ZR08 3092 aa26.68■■□□□ 1.86
PTPN4-208ENST00000460289 A0A1W2PPC1 479 aa26.67■■□□□ 1.86
PTPN4-208ENST00000460289 DYNC1LI2O43237 492 aaPredicted RBP26.67■■□□□ 1.86
PTPN4-208ENST00000460289 CYTH3O43739 400 aa26.67■■□□□ 1.86
PTPN4-208ENST00000460289 ASGR1P07306 291 aa26.67■■□□□ 1.86
PTPN4-208ENST00000460289 TRIM60Q495X7 471 aa26.67■■□□□ 1.86
PTPN4-208ENST00000460289 SLC12A7Q9Y666 1083 aa26.67■■□□□ 1.86
PTPN4-208ENST00000460289 LCTP09848 1927 aa26.67■■□□□ 1.86
PTPN4-208ENST00000460289 ELP1O95163 1332 aa26.66■■□□□ 1.86
PTPN4-208ENST00000460289 RBM47A0AV96 593 aaKnown RBP26.66■■□□□ 1.86
PTPN4-208ENST00000460289 PPP1R11O60927 126 aaPredicted RBP26.66■■□□□ 1.86
PTPN4-208ENST00000460289 CFBP00751 764 aa26.66■■□□□ 1.86
PTPN4-208ENST00000460289 MAGEA10P43363 369 aaPredicted RBP26.66■■□□□ 1.86
PTPN4-208ENST00000460289 SLC35G1Q2M3R5 365 aa26.66■■□□□ 1.86
PTPN4-208ENST00000460289 DUSP28Q4G0W2 176 aa26.66■■□□□ 1.86
PTPN4-208ENST00000460289 TAAR1Q96RJ0 339 aa26.66■■□□□ 1.86
PTPN4-208ENST00000460289 IWS1Q96ST2 819 aa26.66■■□□□ 1.86
PTPN4-208ENST00000460289 MYL10Q9BUA6 226 aa26.66■■□□□ 1.86
PTPN4-208ENST00000460289 WDR11Q9BZH6 1224 aa26.66■■□□□ 1.86
PTPN4-208ENST00000460289 ZEB2O60315 1214 aa26.65■■□□□ 1.86
PTPN4-208ENST00000460289 HMGB1P09429 215 aaKnown RBP26.65■■□□□ 1.86
PTPN4-208ENST00000460289 GHRHRQ02643 423 aa26.65■■□□□ 1.86
PTPN4-208ENST00000460289 COL9A3Q14050 684 aaPredicted RBP26.65■■□□□ 1.86
PTPN4-208ENST00000460289 DHX32Q7L7V1 743 aaKnown RBP26.65■■□□□ 1.86
PTPN4-208ENST00000460289 RASEFQ8IZ41 740 aa26.65■■□□□ 1.86
PTPN4-208ENST00000460289 VTI1AQ96AJ9 217 aa26.65■■□□□ 1.86
PTPN4-208ENST00000460289 RMDN3Q96TC7 470 aa26.65■■□□□ 1.86
PTPN4-208ENST00000460289 SPZ1Q9BXG8 430 aa26.65■■□□□ 1.86
PTPN4-208ENST00000460289 MYH6P13533 1939 aa26.65■■□□□ 1.86
PTPN4-208ENST00000460289 CTAGE5O15320 804 aa26.64■■□□□ 1.86
PTPN4-208ENST00000460289 HSD17B4P51659 736 aa26.64■■□□□ 1.86
PTPN4-208ENST00000460289 IRX5P78411 483 aaPredicted RBP26.64■■□□□ 1.86
PTPN4-208ENST00000460289 TLE2Q04725 743 aa26.64■■□□□ 1.86
PTPN4-208ENST00000460289 FSCN1Q16658 493 aaKnown RBP26.64■■□□□ 1.86
PTPN4-208ENST00000460289 SYNE3Q6ZMZ3 975 aa26.64■■□□□ 1.86
PTPN4-208ENST00000460289 SGMS1Q86VZ5 419 aa26.64■■□□□ 1.86
PTPN4-208ENST00000460289 SCFD2Q8WU76 684 aa26.64■■□□□ 1.86
PTPN4-208ENST00000460289 RRP36Q96EU6 259 aaKnown RBP26.64■■□□□ 1.86
PTPN4-208ENST00000460289 LBHD1Q9BQE6 289 aaPredicted RBP26.64■■□□□ 1.86
PTPN4-208ENST00000460289 LRRC2Q9BYS8 371 aa26.64■■□□□ 1.86
PTPN4-208ENST00000460289 COL20A1Q9P218 1284 aa26.64■■□□□ 1.86
PTPN4-208ENST00000460289 CABYRO75952 493 aa26.63■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms