RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 P2RX5Q93086 422 aa8.49□□□□□ -1.05
NEDD9-204ENST00000448183 RIOK1Q9BRS2 568 aaKnown RBP8.49□□□□□ -1.05
NEDD9-204ENST00000448183 ACTR5Q9H9F9 607 aaPredicted RBP8.49□□□□□ -1.05
NEDD9-204ENST00000448183 JRKLQ9Y4A0 524 aa8.49□□□□□ -1.05
NEDD9-204ENST00000448183 POC1B-GALNT4F8VUJ3 575 aa8.49□□□□□ -1.05
NEDD9-204ENST00000448183 RNF8O76064 485 aa8.49□□□□□ -1.05
NEDD9-204ENST00000448183 MAN2A1Q16706 1144 aa8.49□□□□□ -1.05
NEDD9-204ENST00000448183 ARMCX5Q6P1M9 558 aa8.49□□□□□ -1.05
NEDD9-204ENST00000448183 SCYL2Q6P3W7 929 aa8.49□□□□□ -1.05
NEDD9-204ENST00000448183 UNC5CLQ8IV45 518 aa8.49□□□□□ -1.05
NEDD9-204ENST00000448183 VSTM4Q8IW00 320 aa8.49□□□□□ -1.05
NEDD9-204ENST00000448183 NLRP7Q8WX94 980 aa8.49□□□□□ -1.05
NEDD9-204ENST00000448183 GJA10Q969M2 543 aa8.49□□□□□ -1.05
NEDD9-204ENST00000448183 CNOT10Q9H9A5 744 aaKnown RBP8.49□□□□□ -1.05
NEDD9-204ENST00000448183 DDX25Q9UHL0 483 aaKnown RBP8.49□□□□□ -1.05
NEDD9-204ENST00000448183 CLEC11AQ9Y240 323 aa8.49□□□□□ -1.05
NEDD9-204ENST00000448183 ARHGEF5Q12774 1597 aa8.49□□□□□ -1.05
NEDD9-204ENST00000448183 INHBAP08476 426 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 LIG4P49917 911 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 MESDQ14696 234 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 CASP8Q14790 479 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 ZMYM1Q5SVZ6 1142 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 DPP8Q6V1X1 898 aaPredicted RBP8.48□□□□□ -1.05
NEDD9-204ENST00000448183 TRIM50Q86XT4 487 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 IL17REQ8NFR9 667 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 CDKL2Q92772 493 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 C8orf37Q96NL8 207 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 BTG4Q9NY30 223 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 THEGQ9P2T0 379 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 ATP8A1Q9Y2Q0 1164 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 HSPA6P17066 643 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 BPIFB4P59827 614 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 YWHAGP61981 247 aaKnown RBP eCLIP8.48□□□□□ -1.05
NEDD9-204ENST00000448183 KIF23Q02241 960 aaPredicted RBP8.48□□□□□ -1.05
NEDD9-204ENST00000448183 TCP10Q12799 353 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 NNTQ13423 1086 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 ZKSCAN8Q15776 578 aaPredicted RBP8.48□□□□□ -1.05
NEDD9-204ENST00000448183 FAM102BQ5T8I3 360 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 ALS2CLQ60I27 953 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 FBXO38Q6PIJ6 1188 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 ARHGEF18Q6ZSZ5 1173 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 PDZD4Q76G19 769 aaPredicted RBP8.48□□□□□ -1.05
NEDD9-204ENST00000448183 CCDC127Q96BQ5 260 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 AK8Q96MA6 479 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 FRMD3A2A2Y4 597 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 PNMA6AP0CW24 399 aaPredicted RBP8.48□□□□□ -1.05
NEDD9-204ENST00000448183 YARSP54577 528 aaKnown RBP8.48□□□□□ -1.05
NEDD9-204ENST00000448183 PLTPP55058 493 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 ZBED6P86452 979 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 TRIM42Q8IWZ5 723 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 ACRBPQ8NEB7 543 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 LARP4BQ92615 738 aaKnown RBP8.48□□□□□ -1.05
NEDD9-204ENST00000448183 CCNL1Q9UK58 526 aaPredicted RBP8.48□□□□□ -1.05
NEDD9-204ENST00000448183 FKBP3Q00688 224 aaKnown RBP8.48□□□□□ -1.05
NEDD9-204ENST00000448183 PTK2Q05397 1052 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 DHX9Q08211 1270 aaKnown RBP8.48□□□□□ -1.05
NEDD9-204ENST00000448183 ASPHQ12797 758 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 CUL4BQ13620 913 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 TCP11X2Q5H9J9 407 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 KSR1Q8IVT5 923 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 WHAMMQ8TF30 809 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 HAUS8Q9BT25 410 aa8.48□□□□□ -1.05
NEDD9-204ENST00000448183 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.48□□□□□ -1.05
NEDD9-204ENST00000448183 ATP10AO60312 1499 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 WDR46O15213 610 aaKnown RBP8.47□□□□□ -1.05
NEDD9-204ENST00000448183 GPC4O75487 556 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 MYL1P05976 194 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 KRT3P12035 628 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 NR2F2P24468 414 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 GARSP41250 739 aaKnown RBP8.47□□□□□ -1.05
NEDD9-204ENST00000448183 XKR9Q5GH70 373 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 TMCO4Q5TGY1 634 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 ZNF658Q5TYW1 1059 aaPredicted RBP8.47□□□□□ -1.05
NEDD9-204ENST00000448183 HOOK2Q96ED9 719 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 SCYL1Q96KG9 808 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 PANX2Q96RD6 677 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.47□□□□□ -1.05
NEDD9-204ENST00000448183 GPR108Q9NPR9 543 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 GPHNQ9NQX3 736 aaPredicted RBP8.47□□□□□ -1.05
NEDD9-204ENST00000448183 DBNLQ9UJU6 430 aaKnown RBP8.47□□□□□ -1.05
NEDD9-204ENST00000448183 MAN1B1Q9UKM7 699 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 NOD1Q9Y239 953 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 IVNS1ABPQ9Y6Y0 642 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 SOS2Q07890 1332 aaPredicted RBP8.47□□□□□ -1.05
NEDD9-204ENST00000448183 ERBB4Q15303 1308 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 SPECC1L-ADORA2AF8WAN1 911 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 PPFIA2O75334 1257 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 DLATP10515 647 aaKnown RBP8.47□□□□□ -1.05
NEDD9-204ENST00000448183 NR1D1P20393 614 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 GNPTABQ3T906 1256 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 LRRC24Q50LG9 513 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 SMYD4Q8IYR2 804 aaPredicted RBP8.47□□□□□ -1.05
NEDD9-204ENST00000448183 PDCD7Q8N8D1 485 aaKnown RBP8.47□□□□□ -1.05
NEDD9-204ENST00000448183 FBXO41Q8TF61 875 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 PBKQ96KB5 322 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 HESX1Q9UBX0 185 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 PTPN22Q9Y2R2 807 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 MAD1L1Q9Y6D9 718 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 ABCC12Q96J65 1359 aa8.47□□□□□ -1.05
NEDD9-204ENST00000448183 A0A087WWV3 80 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms