RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 IGKV6D-41A0A0C4DH26 115 aa9.18□□□□□ -0.94
VPS50-204ENST00000438395 RANBP6O60518 1105 aaKnown RBP9.18□□□□□ -0.94
VPS50-204ENST00000438395 DUSP11O75319 330 aaKnown RBP9.18□□□□□ -0.94
VPS50-204ENST00000438395 OATP04181 439 aa9.18□□□□□ -0.94
VPS50-204ENST00000438395 ZNF865P0CJ78 1059 aaPredicted RBP9.18□□□□□ -0.94
VPS50-204ENST00000438395 ACVR2BQ13705 512 aa9.18□□□□□ -0.94
VPS50-204ENST00000438395 SHHQ15465 462 aa9.18□□□□□ -0.94
VPS50-204ENST00000438395 TKFCQ3LXA3 575 aa9.18□□□□□ -0.94
VPS50-204ENST00000438395 GNASQ5JWF2 1037 aa9.18□□□□□ -0.94
VPS50-204ENST00000438395 ZMYM1Q5SVZ6 1142 aa9.18□□□□□ -0.94
VPS50-204ENST00000438395 ARMCX2Q7L311 632 aa9.18□□□□□ -0.94
VPS50-204ENST00000438395 CHMP4CQ96CF2 233 aa9.18□□□□□ -0.94
VPS50-204ENST00000438395 GMCL1Q96IK5 515 aa9.18□□□□□ -0.94
VPS50-204ENST00000438395 PHOX2BQ99453 314 aa9.18□□□□□ -0.94
VPS50-204ENST00000438395 ABHD16BQ9H3Z7 469 aa9.18□□□□□ -0.94
VPS50-204ENST00000438395 RNF146Q9NTX7 359 aa9.18□□□□□ -0.94
VPS50-204ENST00000438395 MTMR7Q9Y216 660 aa9.18□□□□□ -0.94
VPS50-204ENST00000438395 RIPK3Q9Y572 518 aa9.18□□□□□ -0.94
VPS50-204ENST00000438395 FRMPD3Q5JV73 1810 aa9.17□□□□□ -0.94
VPS50-204ENST00000438395 DNAJC25-GNG10A0A024R161 153 aa9.17□□□□□ -0.94
VPS50-204ENST00000438395 TRIM43BA6NCK2 446 aa9.17□□□□□ -0.94
VPS50-204ENST00000438395 ASB14A6NK59 587 aa9.17□□□□□ -0.94
VPS50-204ENST00000438395 KIAA0355O15063 1070 aa9.17□□□□□ -0.94
VPS50-204ENST00000438395 TLR3O15455 904 aaKnown RBP9.17□□□□□ -0.94
VPS50-204ENST00000438395 TLL1O43897 1013 aa9.17□□□□□ -0.94
VPS50-204ENST00000438395 ADAMTS4O75173 837 aa9.17□□□□□ -0.94
VPS50-204ENST00000438395 ALAS1P13196 640 aa9.17□□□□□ -0.94
VPS50-204ENST00000438395 MCCP23508 829 aa9.17□□□□□ -0.94
VPS50-204ENST00000438395 SMAD3P84022 425 aaKnown RBP9.17□□□□□ -0.94
VPS50-204ENST00000438395 KCNA10Q16322 511 aa9.17□□□□□ -0.94
VPS50-204ENST00000438395 CCDC144BQ3MJ40 725 aa9.17□□□□□ -0.94
VPS50-204ENST00000438395 C9orf50Q5SZB4 431 aa9.17□□□□□ -0.94
VPS50-204ENST00000438395 ANKRD45Q5TZF3 282 aa9.17□□□□□ -0.94
VPS50-204ENST00000438395 MAMDC4Q6UXC1 1216 aa9.17□□□□□ -0.94
VPS50-204ENST00000438395 SH3RF1Q7Z6J0 888 aa9.17□□□□□ -0.94
VPS50-204ENST00000438395 PI4K2BQ8TCG2 481 aa9.17□□□□□ -0.94
VPS50-204ENST00000438395 OTUD7AQ8TE49 926 aaPredicted RBP9.17□□□□□ -0.94
VPS50-204ENST00000438395 MKL1Q969V6 931 aa9.17□□□□□ -0.94
VPS50-204ENST00000438395 TRIM43Q96BQ3 446 aaPredicted RBP9.17□□□□□ -0.94
VPS50-204ENST00000438395 SEC62Q99442 399 aaKnown RBP9.17□□□□□ -0.94
VPS50-204ENST00000438395 IRX2Q9BZI1 471 aaPredicted RBP9.17□□□□□ -0.94
VPS50-204ENST00000438395 COL6A3P12111 3177 aa9.17□□□□□ -0.94
VPS50-204ENST00000438395 MYH7P12883 1935 aa9.17□□□□□ -0.94
VPS50-204ENST00000438395 ELP1O95163 1332 aa9.16□□□□□ -0.94
VPS50-204ENST00000438395 RLFQ13129 1914 aa9.16□□□□□ -0.94
VPS50-204ENST00000438395 A0A0U1RQG5 324 aaPredicted RBP9.16□□□□□ -0.94
VPS50-204ENST00000438395 ZEB2O60315 1214 aa9.16□□□□□ -0.94
VPS50-204ENST00000438395 SNAI1O95863 264 aaPredicted RBP9.16□□□□□ -0.94
VPS50-204ENST00000438395 CST5P28325 142 aaPredicted RBP9.16□□□□□ -0.94
VPS50-204ENST00000438395 RRP1P56182 461 aaKnown RBP9.16□□□□□ -0.94
VPS50-204ENST00000438395 PPIGQ13427 754 aaKnown RBP eCLIP9.16□□□□□ -0.94
VPS50-204ENST00000438395 KCTD1Q719H9 257 aa9.16□□□□□ -0.94
VPS50-204ENST00000438395 ANKRD33Q7Z3H0 272 aa9.16□□□□□ -0.94
VPS50-204ENST00000438395 CCDC144CPQ8IYA2 1237 aa9.16□□□□□ -0.94
VPS50-204ENST00000438395 STAG1Q8WVM7 1258 aa9.16□□□□□ -0.94
VPS50-204ENST00000438395 EVI5LQ96CN4 794 aa9.16□□□□□ -0.94
VPS50-204ENST00000438395 TOX2Q96NM4 488 aa9.16□□□□□ -0.94
VPS50-204ENST00000438395 TRERF1Q96PN7 1200 aa9.16□□□□□ -0.94
VPS50-204ENST00000438395 AP5M1Q9H0R1 490 aa9.16□□□□□ -0.94
VPS50-204ENST00000438395 CCPG1Q9ULG6 757 aa9.16□□□□□ -0.94
VPS50-204ENST00000438395 PCDHB15Q9Y5E8 787 aa9.16□□□□□ -0.94
VPS50-204ENST00000438395 TTC28Q96AY4 2481 aa9.16□□□□□ -0.94
VPS50-204ENST00000438395 CABYRO75952 493 aa9.15□□□□□ -0.94
VPS50-204ENST00000438395 ASGR1P07306 291 aa9.15□□□□□ -0.94
VPS50-204ENST00000438395 TNFAIP2Q03169 654 aa9.15□□□□□ -0.94
VPS50-204ENST00000438395 CTDSPL2Q05D32 466 aa9.15□□□□□ -0.94
VPS50-204ENST00000438395 RRP12Q5JTH9 1297 aaKnown RBP9.15□□□□□ -0.94
VPS50-204ENST00000438395 RCSD1Q6JBY9 416 aa9.15□□□□□ -0.94
VPS50-204ENST00000438395 NSMFQ6X4W1 530 aa9.15□□□□□ -0.94
VPS50-204ENST00000438395 CCDC129Q6ZRS4 1044 aa9.15□□□□□ -0.94
VPS50-204ENST00000438395 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.15□□□□□ -0.94
VPS50-204ENST00000438395 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.15□□□□□ -0.94
VPS50-204ENST00000438395 TMEM199Q8N511 208 aa9.15□□□□□ -0.94
VPS50-204ENST00000438395 MAFAQ8NHW3 353 aaPredicted RBP9.15□□□□□ -0.94
VPS50-204ENST00000438395 DCAF4Q8WV16 495 aa9.15□□□□□ -0.94
VPS50-204ENST00000438395 AGBL1Q96MI9 1066 aa9.15□□□□□ -0.94
VPS50-204ENST00000438395 GUCD1Q96NT3 240 aa9.15□□□□□ -0.94
VPS50-204ENST00000438395 MPHOSPH6Q99547 160 aaKnown RBP9.15□□□□□ -0.94
VPS50-204ENST00000438395 MTIF3Q9H2K0 278 aaKnown RBP9.15□□□□□ -0.94
VPS50-204ENST00000438395 A1CFQ9NQ94 594 aaKnown RBP9.15□□□□□ -0.94
VPS50-204ENST00000438395 ADD3Q9UEY8 706 aaKnown RBP9.15□□□□□ -0.94
VPS50-204ENST00000438395 PNMA2Q9UL42 364 aa9.15□□□□□ -0.94
VPS50-204ENST00000438395 LAMA2P24043 3122 aaKnown RBP9.14□□□□□ -0.95
VPS50-204ENST00000438395 TMEM265A0A087WTH1 108 aa9.14□□□□□ -0.95
VPS50-204ENST00000438395 MYADML2A6NDP7 307 aa9.14□□□□□ -0.95
VPS50-204ENST00000438395 ARVCFO00192 962 aa9.14□□□□□ -0.95
VPS50-204ENST00000438395 ACTN4O43707 911 aaKnown RBP9.14□□□□□ -0.95
VPS50-204ENST00000438395 ORC4O43929 436 aa9.14□□□□□ -0.95
VPS50-204ENST00000438395 PLA2G6O60733 806 aa9.14□□□□□ -0.95
VPS50-204ENST00000438395 FOSL2P15408 326 aa9.14□□□□□ -0.95
VPS50-204ENST00000438395 MFAP1P55081 439 aaKnown RBP9.14□□□□□ -0.95
VPS50-204ENST00000438395 GJA9P57773 515 aa9.14□□□□□ -0.95
VPS50-204ENST00000438395 CNTN2Q02246 1040 aa9.14□□□□□ -0.95
VPS50-204ENST00000438395 FAAP100Q0VG06 881 aa9.14□□□□□ -0.95
VPS50-204ENST00000438395 FSCN1Q16658 493 aaKnown RBP9.14□□□□□ -0.95
VPS50-204ENST00000438395 TLK2Q86UE8 772 aa9.14□□□□□ -0.95
VPS50-204ENST00000438395 KLHDC9Q8NEP7 349 aa9.14□□□□□ -0.95
VPS50-204ENST00000438395 CDX2Q99626 313 aaPredicted RBP9.14□□□□□ -0.95
VPS50-204ENST00000438395 UPF3AQ9H1J1 476 aaKnown RBP9.14□□□□□ -0.95
VPS50-204ENST00000438395 HELLSQ9NRZ9 838 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms