RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 SHROOM1Q2M3G4 852 aaPredicted RBP8.04□□□□□ -1.12
COL28A1-202ENST00000430711 TMTC1Q8IUR5 882 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 TGFBRAP1Q8WUH2 860 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 RNF25Q96BH1 459 aaPredicted RBP8.04□□□□□ -1.12
COL28A1-202ENST00000430711 CNOT6LQ96LI5 555 aaKnown RBP8.04□□□□□ -1.12
COL28A1-202ENST00000430711 UBA5Q9GZZ9 404 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 BCAS3Q9H6U6 928 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 VAT1LQ9HCJ6 419 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 SLC39A2Q9NP94 309 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 KBTBD4Q9NVX7 518 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 LRWD1Q9UFC0 647 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 PCDHA4Q9UN74 947 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 STX8Q9UNK0 236 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 ADAMTSL1Q8N6G6 1762 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 CCDC88AQ3V6T2 1871 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 SPATA31A1Q5TZJ5 1347 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 NAV1Q8NEY1 1877 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 CTAGE15A4D2H0 777 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 ZSCAN5CA6NGD5 496 aaPredicted RBP8.04□□□□□ -1.12
COL28A1-202ENST00000430711 SEMA3EO15041 775 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 SLC37A4O43826 429 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 CTAGE8P0CG41 777 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 TAL1P17542 331 aaPredicted RBP8.04□□□□□ -1.12
COL28A1-202ENST00000430711 XBP1P17861 261 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 TECP42680 631 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 SLC7A5Q01650 507 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 SF3B3Q15393 1217 aaKnown RBP8.04□□□□□ -1.12
COL28A1-202ENST00000430711 LETM2Q2VYF4 491 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 FILIP1LQ4L180 1135 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 PARP10Q53GL7 1025 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 CCDC122Q5T0U0 273 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 TTC19Q6DKK2 380 aaPredicted RBP8.04□□□□□ -1.12
COL28A1-202ENST00000430711 CTAGE6Q86UF2 777 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 CTAGE4Q8IX94 777 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 GIMAP8Q8ND71 665 aaPredicted RBP8.04□□□□□ -1.12
COL28A1-202ENST00000430711 CCDC102AQ96A19 550 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 AK7Q96M32 723 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 TMEM47Q9BQJ4 181 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 TUBGCP2Q9BSJ2 902 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 MTA3Q9BTC8 594 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 NAA15Q9BXJ9 866 aaKnown RBP8.04□□□□□ -1.12
COL28A1-202ENST00000430711 NHEJ1Q9H9Q4 299 aaPredicted RBP8.04□□□□□ -1.12
COL28A1-202ENST00000430711 ARHGAP20Q9P2F6 1191 aa8.04□□□□□ -1.12
COL28A1-202ENST00000430711 DMGDHQ9UI17 866 aaKnown RBP8.04□□□□□ -1.12
COL28A1-202ENST00000430711 TTF2Q9UNY4 1162 aaKnown RBP8.04□□□□□ -1.12
COL28A1-202ENST00000430711 FRMPD2Q68DX3 1309 aaPredicted RBP8.04□□□□□ -1.12
COL28A1-202ENST00000430711 CCDC66A2RUB6 948 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 PRPF6O94906 941 aaKnown RBP8.03□□□□□ -1.12
COL28A1-202ENST00000430711 MOCS3O95396 460 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 HIBADHP31937 336 aaKnown RBP8.03□□□□□ -1.12
COL28A1-202ENST00000430711 USP14P54578 494 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 FAM193AP78312 1265 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 TRADDQ15628 312 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 PTPROQ16827 1216 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 CAVIN4Q5BKX8 364 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 C12orf60Q5U649 245 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 NFRKBQ6P4R8 1299 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 LRRC31Q6UY01 552 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 DYMQ7RTS9 669 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 C10orf67Q8IYJ2 551 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 CEP112Q8N8E3 955 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 PROCA1Q8NCQ7 364 aaPredicted RBP8.03□□□□□ -1.12
COL28A1-202ENST00000430711 RASSF8Q8NHQ8 419 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 HNRNPLLQ8WVV9 542 aaKnown RBP8.03□□□□□ -1.12
COL28A1-202ENST00000430711 BBXQ8WY36 941 aaPredicted RBP8.03□□□□□ -1.12
COL28A1-202ENST00000430711 CTAGE1Q96RT6 745 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 TRIM9Q9C026 710 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 KAT14Q9H8E8 782 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 FAM204AQ9H8W3 233 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 FAM207AQ9NSI2 230 aaPredicted RBP8.03□□□□□ -1.12
COL28A1-202ENST00000430711 BLOC1S4Q9NUP1 217 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 BIN2Q9UBW5 565 aaPredicted RBP8.03□□□□□ -1.12
COL28A1-202ENST00000430711 MAST2Q6P0Q8 1798 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 PSMD14O00487 310 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 CCNT1O60563 726 aaKnown RBP8.03□□□□□ -1.12
COL28A1-202ENST00000430711 TDP2O95551 362 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 SRGNP10124 158 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 RASA1P20936 1047 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 DNA2P51530 1060 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 EIF6P56537 245 aaKnown RBP8.03□□□□□ -1.12
COL28A1-202ENST00000430711 RPS8P62241 208 aaKnown RBP8.03□□□□□ -1.12
COL28A1-202ENST00000430711 PDE4DQ08499 809 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 GRM4Q14833 912 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 CSGALNACT2Q8N6G5 542 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 OR8K1Q8NGG5 319 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 JAKMIP2Q96AA8 810 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 PNMA5Q96PV4 448 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 PIGSQ96S52 555 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 BRMS1Q9HCU9 246 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 HPCAL4Q9UM19 191 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 CAPN11Q9UMQ6 739 aa8.03□□□□□ -1.12
COL28A1-202ENST00000430711 CCDC194A0A1B0GVG4 234 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 MYMKA6NI61 221 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 ATP8B1O43520 1251 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 RNF40O75150 1001 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 RHOBTB3O94955 611 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 TPM1P09493 284 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 GGCXP38435 758 aa8.02□□□□□ -1.13
COL28A1-202ENST00000430711 MATR3P43243 847 aaKnown RBP eCLIP8.02□□□□□ -1.13
COL28A1-202ENST00000430711 GRB10Q13322 594 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms