RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ZNF396Q96N95 335 aaPredicted RBP11.54□□□□□ -0.56
CD44-207ENST00000425428 ZNF536O15090 1300 aa11.54□□□□□ -0.56
CD44-207ENST00000425428 ZNFX1Q9P2E3 1918 aaKnown RBP11.54□□□□□ -0.56
CD44-207ENST00000425428 SMCHD1A6NHR9 2005 aa11.54□□□□□ -0.56
CD44-207ENST00000425428 POTEB2H3BUK9 544 aa11.54□□□□□ -0.56
CD44-207ENST00000425428 PIK3CDO00329 1044 aa11.54□□□□□ -0.56
CD44-207ENST00000425428 PPP1R11O60927 126 aaPredicted RBP11.54□□□□□ -0.56
CD44-207ENST00000425428 DTNBO60941 627 aa11.54□□□□□ -0.56
CD44-207ENST00000425428 ZNF76P36508 570 aa11.54□□□□□ -0.56
CD44-207ENST00000425428 FCGRTP55899 365 aa11.54□□□□□ -0.56
CD44-207ENST00000425428 PLEKHH3Q7Z736 793 aa11.54□□□□□ -0.56
CD44-207ENST00000425428 FCHSD1Q86WN1 690 aa11.54□□□□□ -0.56
CD44-207ENST00000425428 NOSTRINQ8IVI9 506 aa11.54□□□□□ -0.56
CD44-207ENST00000425428 RNF186Q9NXI6 227 aa11.54□□□□□ -0.56
CD44-207ENST00000425428 BIN2Q9UBW5 565 aaPredicted RBP11.54□□□□□ -0.56
CD44-207ENST00000425428 TNPO2O14787 897 aaKnown RBP11.53□□□□□ -0.56
CD44-207ENST00000425428 SP3Q02447 781 aa11.53□□□□□ -0.56
CD44-207ENST00000425428 CSPP1Q1MSJ5 1256 aa11.53□□□□□ -0.56
CD44-207ENST00000425428 ARHGEF16Q5VV41 709 aa11.53□□□□□ -0.56
CD44-207ENST00000425428 JAKMIP3Q5VZ66 844 aa11.53□□□□□ -0.56
CD44-207ENST00000425428 C17orf99Q6UX52 265 aa11.53□□□□□ -0.56
CD44-207ENST00000425428 DPP9Q86TI2 863 aa11.53□□□□□ -0.56
CD44-207ENST00000425428 ABRAQ8N0Z2 381 aa11.53□□□□□ -0.56
CD44-207ENST00000425428 ZIC5Q96T25 663 aa11.53□□□□□ -0.56
CD44-207ENST00000425428 TXNRD2Q9NNW7 524 aa11.53□□□□□ -0.56
CD44-207ENST00000425428 CFAP45Q9UL16 551 aa11.53□□□□□ -0.56
CD44-207ENST00000425428 CEP131Q9UPN4 1083 aa11.53□□□□□ -0.56
CD44-207ENST00000425428 PLXNB2O15031 1838 aa11.52□□□□□ -0.56
CD44-207ENST00000425428 BTBD18B2RXH4 712 aa11.52□□□□□ -0.57
CD44-207ENST00000425428 MARCH6O60337 910 aa11.52□□□□□ -0.57
CD44-207ENST00000425428 CNMDO75829 334 aa11.52□□□□□ -0.57
CD44-207ENST00000425428 TBC1D8O95759 1140 aa11.52□□□□□ -0.57
CD44-207ENST00000425428 F13A1P00488 732 aa11.52□□□□□ -0.57
CD44-207ENST00000425428 BCRP11274 1271 aa11.52□□□□□ -0.57
CD44-207ENST00000425428 RPS6P62753 249 aaKnown RBP11.52□□□□□ -0.57
CD44-207ENST00000425428 RILPL1Q5EBL4 403 aa11.52□□□□□ -0.57
CD44-207ENST00000425428 MUM1L1Q5H9M0 696 aa11.52□□□□□ -0.57
CD44-207ENST00000425428 FOXD4L5Q5VV16 416 aaPredicted RBP11.52□□□□□ -0.57
CD44-207ENST00000425428 ATL3Q6DD88 541 aa11.52□□□□□ -0.57
CD44-207ENST00000425428 PIK3AP1Q6ZUJ8 805 aa11.52□□□□□ -0.57
CD44-207ENST00000425428 FERMT3Q86UX7 667 aa11.52□□□□□ -0.57
CD44-207ENST00000425428 DNERQ8NFT8 737 aa11.52□□□□□ -0.57
CD44-207ENST00000425428 NSUN6Q8TEA1 469 aaKnown RBP11.52□□□□□ -0.57
CD44-207ENST00000425428 SOCS4Q8WXH5 440 aa11.52□□□□□ -0.57
CD44-207ENST00000425428 FOXD4L4Q8WXT5 416 aaPredicted RBP11.52□□□□□ -0.57
CD44-207ENST00000425428 ERO1AQ96HE7 468 aa11.52□□□□□ -0.57
CD44-207ENST00000425428 CFHR5Q9BXR6 569 aa11.52□□□□□ -0.57
CD44-207ENST00000425428 MTMR6Q9Y217 621 aa11.52□□□□□ -0.57
CD44-207ENST00000425428 RIPK3Q9Y572 518 aa11.52□□□□□ -0.57
CD44-207ENST00000425428 NFIBO00712 420 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 NCLP19338 710 aaKnown RBP11.51□□□□□ -0.57
CD44-207ENST00000425428 U2AF2P26368 475 aaKnown RBP eCLIP11.51□□□□□ -0.57
CD44-207ENST00000425428 HOXA13P31271 388 aaPredicted RBP11.51□□□□□ -0.57
CD44-207ENST00000425428 TRAPPC10P48553 1259 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 HSD17B4P51659 736 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 BAATQ14032 418 aaPredicted RBP11.51□□□□□ -0.57
CD44-207ENST00000425428 UBE2SQ16763 222 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 Q3C1V9 767 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 USP17L6PQ6QN14 398 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 CLEC4DQ8WXI8 215 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 RMDN3Q96TC7 470 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 NUDT12Q9BQG2 462 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 EFCC1Q9HA90 598 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 A1CFQ9NQ94 594 aaKnown RBP11.51□□□□□ -0.57
CD44-207ENST00000425428 GJB4Q9NTQ9 266 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 CYP39A1Q9NYL5 469 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 PCDHA6Q9UN73 950 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 PCDHA8Q9Y5H6 950 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 MGAMO43451 1857 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 LOC102724159A0A0B4J2E5 919 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 SLC15A5A6NIM6 579 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 GOLGA6L22H0YM25 854 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 BRD1O95696 1058 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 BMP15O95972 392 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 GNRH1P01148 92 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 PWP2Q15269 919 aaKnown RBP11.51□□□□□ -0.57
CD44-207ENST00000425428 TYW1BQ6NUM6 668 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 XRRA1Q6P2D8 792 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 GPR142Q7Z601 462 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 NEK8Q86SG6 692 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 GBP4Q96PP9 640 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 ANO3Q9BYT9 981 aa11.51□□□□□ -0.57
CD44-207ENST00000425428 THSD7BQ9C0I4 1608 aa11.5□□□□□ -0.57
CD44-207ENST00000425428 ASB14A6NK59 587 aa11.5□□□□□ -0.57
CD44-207ENST00000425428 MEIS2O14770 477 aa11.5□□□□□ -0.57
CD44-207ENST00000425428 FKTNO75072 461 aa11.5□□□□□ -0.57
CD44-207ENST00000425428 GCFC2P16383 781 aaKnown RBP11.5□□□□□ -0.57
CD44-207ENST00000425428 PTPREP23469 700 aa11.5□□□□□ -0.57
CD44-207ENST00000425428 CCND2P30279 289 aa11.5□□□□□ -0.57
CD44-207ENST00000425428 RGS2P41220 211 aa11.5□□□□□ -0.57
CD44-207ENST00000425428 PSMC4P43686 418 aa11.5□□□□□ -0.57
CD44-207ENST00000425428 USP11P51784 963 aa11.5□□□□□ -0.57
CD44-207ENST00000425428 KRT85P78386 507 aa11.5□□□□□ -0.57
CD44-207ENST00000425428 NR5A1Q13285 461 aa11.5□□□□□ -0.57
CD44-207ENST00000425428 SYTL5Q8TDW5 730 aaPredicted RBP11.5□□□□□ -0.57
CD44-207ENST00000425428 IWS1Q96ST2 819 aa11.5□□□□□ -0.57
CD44-207ENST00000425428 PORCNQ9H237 461 aa11.5□□□□□ -0.57
CD44-207ENST00000425428 TCEAL9Q9UHQ7 104 aa11.5□□□□□ -0.57
CD44-207ENST00000425428 ADGRA2Q96PE1 1338 aa11.49□□□□□ -0.57
CD44-207ENST00000425428 PLXNA1Q9UIW2 1896 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms