RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 VPS54Q9P1Q0 977 aa19.56■□□□□ 0.72
COL7A1-202ENST00000422991 HTTP42858 3142 aa19.56■□□□□ 0.72
COL7A1-202ENST00000422991 HSD17B4P51659 736 aa19.55■□□□□ 0.72
COL7A1-202ENST00000422991 PRKCZQ05513 592 aa19.55■□□□□ 0.72
COL7A1-202ENST00000422991 FBXO46Q6PJ61 603 aaPredicted RBP19.55■□□□□ 0.72
COL7A1-202ENST00000422991 RNF207Q6ZRF8 634 aa19.55■□□□□ 0.72
COL7A1-202ENST00000422991 OTOP1Q7RTM1 612 aa19.55■□□□□ 0.72
COL7A1-202ENST00000422991 SAMD3Q8N6K7 520 aa19.55■□□□□ 0.72
COL7A1-202ENST00000422991 CCDC148Q8NFR7 591 aa19.55■□□□□ 0.72
COL7A1-202ENST00000422991 TBC1D5Q92609 795 aa19.55■□□□□ 0.72
COL7A1-202ENST00000422991 INTS4Q96HW7 963 aaKnown RBP19.55■□□□□ 0.72
COL7A1-202ENST00000422991 NUDT12Q9BQG2 462 aa19.55■□□□□ 0.72
COL7A1-202ENST00000422991 SRRDQ9UH36 339 aa19.55■□□□□ 0.72
COL7A1-202ENST00000422991 GABRQQ9UN88 632 aa19.55■□□□□ 0.72
COL7A1-202ENST00000422991 LRRC37A2A6NM11 1700 aa19.54■□□□□ 0.72
COL7A1-202ENST00000422991 COBLO75128 1261 aa19.54■□□□□ 0.72
COL7A1-202ENST00000422991 CFBP00751 764 aa19.54■□□□□ 0.72
COL7A1-202ENST00000422991 PGK2P07205 417 aa19.54■□□□□ 0.72
COL7A1-202ENST00000422991 HOXD10P28358 340 aa19.54■□□□□ 0.72
COL7A1-202ENST00000422991 ADCY7P51828 1080 aa19.54■□□□□ 0.72
COL7A1-202ENST00000422991 RPS6P62753 249 aaKnown RBP19.54■□□□□ 0.72
COL7A1-202ENST00000422991 MAP2K5Q13163 448 aa19.54■□□□□ 0.72
COL7A1-202ENST00000422991 BAATQ14032 418 aaPredicted RBP19.54■□□□□ 0.72
COL7A1-202ENST00000422991 CUL5Q93034 780 aa19.54■□□□□ 0.72
COL7A1-202ENST00000422991 ZMYND12Q9H0C1 365 aa19.54■□□□□ 0.72
COL7A1-202ENST00000422991 PSTPIP2Q9H939 334 aa19.54■□□□□ 0.72
COL7A1-202ENST00000422991 RIC8AQ9NPQ8 531 aa19.54■□□□□ 0.72
COL7A1-202ENST00000422991 SMC3Q9UQE7 1217 aa19.54■□□□□ 0.72
COL7A1-202ENST00000422991 TRIM17Q9Y577 477 aa19.54■□□□□ 0.72
COL7A1-202ENST00000422991 SMCO2A6NFE2 343 aa19.53■□□□□ 0.72
COL7A1-202ENST00000422991 GCOM1H8Y6P7 765 aaPredicted RBP19.53■□□□□ 0.72
COL7A1-202ENST00000422991 PIK3CDO00329 1044 aa19.53■□□□□ 0.72
COL7A1-202ENST00000422991 HOXC6P09630 235 aa19.53■□□□□ 0.72
COL7A1-202ENST00000422991 POLR2MP0CAP2 368 aa19.53■□□□□ 0.72
COL7A1-202ENST00000422991 CALML3P27482 149 aa19.53■□□□□ 0.72
COL7A1-202ENST00000422991 GJB2P29033 226 aa19.53■□□□□ 0.72
COL7A1-202ENST00000422991 RGS2P41220 211 aa19.53■□□□□ 0.72
COL7A1-202ENST00000422991 FLT3LGP49771 235 aa19.53■□□□□ 0.72
COL7A1-202ENST00000422991 TEX2Q8IWB9 1127 aa19.53■□□□□ 0.72
COL7A1-202ENST00000422991 FAM133AQ8N9E0 248 aa19.53■□□□□ 0.72
COL7A1-202ENST00000422991 FAM184AQ8NB25 1140 aa19.53■□□□□ 0.72
COL7A1-202ENST00000422991 SYTL5Q8TDW5 730 aaPredicted RBP19.53■□□□□ 0.72
COL7A1-202ENST00000422991 APBA2Q99767 749 aa19.53■□□□□ 0.72
COL7A1-202ENST00000422991 MAP3K20Q9NYL2 800 aaKnown RBP19.53■□□□□ 0.72
COL7A1-202ENST00000422991 POTEB2H3BUK9 544 aa19.52■□□□□ 0.72
COL7A1-202ENST00000422991 MEIS2O14770 477 aa19.52■□□□□ 0.72
COL7A1-202ENST00000422991 XBP1P17861 261 aa19.52■□□□□ 0.72
COL7A1-202ENST00000422991 HOXA13P31271 388 aaPredicted RBP19.52■□□□□ 0.72
COL7A1-202ENST00000422991 PRMT2P55345 433 aa19.52■□□□□ 0.72
COL7A1-202ENST00000422991 CNTN2Q02246 1040 aa19.52■□□□□ 0.72
COL7A1-202ENST00000422991 BECN1Q14457 450 aa19.52■□□□□ 0.72
COL7A1-202ENST00000422991 UBE2SQ16763 222 aa19.52■□□□□ 0.72
COL7A1-202ENST00000422991 ZNF792Q3KQV3 632 aa19.52■□□□□ 0.72
COL7A1-202ENST00000422991 USP17L6PQ6QN14 398 aa19.52■□□□□ 0.72
COL7A1-202ENST00000422991 FGD4Q96M96 766 aa19.52■□□□□ 0.72
COL7A1-202ENST00000422991 PHF20Q9BVI0 1012 aa19.52■□□□□ 0.72
COL7A1-202ENST00000422991 GLT8D2Q9H1C3 349 aa19.52■□□□□ 0.72
COL7A1-202ENST00000422991 C6orf50Q9HD87 102 aa19.52■□□□□ 0.72
COL7A1-202ENST00000422991 TSHZ2Q9NRE2 1034 aa19.52■□□□□ 0.72
COL7A1-202ENST00000422991 GJB4Q9NTQ9 266 aa19.52■□□□□ 0.72
COL7A1-202ENST00000422991 COL20A1Q9P218 1284 aa19.52■□□□□ 0.72
COL7A1-202ENST00000422991 KIF3AQ9Y496 699 aa19.52■□□□□ 0.72
COL7A1-202ENST00000422991 MRPL12P52815 198 aaKnown RBP19.51■□□□□ 0.71
COL7A1-202ENST00000422991 FOSBP53539 338 aa19.51■□□□□ 0.71
COL7A1-202ENST00000422991 IRF5Q13568 498 aa19.51■□□□□ 0.71
COL7A1-202ENST00000422991 NPY5RQ15761 445 aa19.51■□□□□ 0.71
COL7A1-202ENST00000422991 DPP9Q86TI2 863 aa19.51■□□□□ 0.71
COL7A1-202ENST00000422991 DAGLBQ8NCG7 672 aa19.51■□□□□ 0.71
COL7A1-202ENST00000422991 NPLOC4Q8TAT6 608 aa19.51■□□□□ 0.71
COL7A1-202ENST00000422991 PURBQ96QR8 312 aaKnown RBP19.51■□□□□ 0.71
COL7A1-202ENST00000422991 KCNJ14Q9UNX9 436 aa19.51■□□□□ 0.71
COL7A1-202ENST00000422991 DIS3Q9Y2L1 958 aaKnown RBP19.51■□□□□ 0.71
COL7A1-202ENST00000422991 ASTN1O14525 1302 aa19.51■□□□□ 0.71
COL7A1-202ENST00000422991 MCM3APO60318 1980 aa19.5■□□□□ 0.71
COL7A1-202ENST00000422991 SOWAHBA6NEL2 793 aa19.5■□□□□ 0.71
COL7A1-202ENST00000422991 ADAMTS3O15072 1205 aa19.5■□□□□ 0.71
COL7A1-202ENST00000422991 XRCC5P13010 732 aaKnown RBP19.5■□□□□ 0.71
COL7A1-202ENST00000422991 CYP2B6P20813 491 aa19.5■□□□□ 0.71
COL7A1-202ENST00000422991 GNA11P29992 359 aa19.5■□□□□ 0.71
COL7A1-202ENST00000422991 NLRP5P59047 1200 aa19.5■□□□□ 0.71
COL7A1-202ENST00000422991 GALNT17Q6IS24 598 aa19.5■□□□□ 0.71
COL7A1-202ENST00000422991 C8orf76Q96K31 380 aa19.5■□□□□ 0.71
COL7A1-202ENST00000422991 FOXD4L1Q9NU39 408 aa19.5■□□□□ 0.71
COL7A1-202ENST00000422991 SLC5A4Q9NY91 659 aa19.5■□□□□ 0.71
COL7A1-202ENST00000422991 PCDHA4Q9UN74 947 aa19.5■□□□□ 0.71
COL7A1-202ENST00000422991 CLK2P49760 499 aaKnown RBP19.49■□□□□ 0.71
COL7A1-202ENST00000422991 TRIM29Q14134 588 aa19.49■□□□□ 0.71
COL7A1-202ENST00000422991 KRT40Q6A162 431 aa19.49■□□□□ 0.71
COL7A1-202ENST00000422991 ZNF467Q7Z7K2 595 aaPredicted RBP19.49■□□□□ 0.71
COL7A1-202ENST00000422991 REXO1Q8N1G1 1221 aaKnown RBP19.49■□□□□ 0.71
COL7A1-202ENST00000422991 BICD2Q8TD16 824 aa19.49■□□□□ 0.71
COL7A1-202ENST00000422991 MAML3Q96JK9 1138 aa19.49■□□□□ 0.71
COL7A1-202ENST00000422991 FRMPD4Q14CM0 1322 aa19.49■□□□□ 0.71
COL7A1-202ENST00000422991 MMP1P03956 469 aa19.48■□□□□ 0.71
COL7A1-202ENST00000422991 HSP90AA1P07900 732 aaKnown RBP19.48■□□□□ 0.71
COL7A1-202ENST00000422991 ANP32AP39687 249 aaKnown RBP19.48■□□□□ 0.71
COL7A1-202ENST00000422991 CCL14Q16627 93 aa19.48■□□□□ 0.71
COL7A1-202ENST00000422991 FCHSD1Q86WN1 690 aa19.48■□□□□ 0.71
COL7A1-202ENST00000422991 BLIDQ8IZY5 108 aa19.48■□□□□ 0.71
COL7A1-202ENST00000422991 DNERQ8NFT8 737 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms