RNA–Protein interactions for RNA: ENST00000417285.6

VEGFA-208, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,081 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-208ENST00000417285 TIMP1P01033 207 aa29.63■■■□□ 2.33
VEGFA-208ENST00000417285 CALML3P27482 149 aa29.63■■■□□ 2.33
VEGFA-208ENST00000417285 BEX3Q00994 111 aa29.63■■■□□ 2.33
VEGFA-208ENST00000417285 ASPRV1Q53RT3 343 aa29.63■■■□□ 2.33
VEGFA-208ENST00000417285 C9orf50Q5SZB4 431 aa29.63■■■□□ 2.33
VEGFA-208ENST00000417285 FBXO16Q8IX29 292 aaPredicted RBP29.63■■■□□ 2.33
VEGFA-208ENST00000417285 DNERQ8NFT8 737 aa29.63■■■□□ 2.33
VEGFA-208ENST00000417285 UBA5Q9GZZ9 404 aa29.63■■■□□ 2.33
VEGFA-208ENST00000417285 TLR3O15455 904 aaKnown RBP29.62■■■□□ 2.33
VEGFA-208ENST00000417285 RPS6P62753 249 aaKnown RBP29.62■■■□□ 2.33
VEGFA-208ENST00000417285 FPGSQ05932 587 aa29.62■■■□□ 2.33
VEGFA-208ENST00000417285 DUSP28Q4G0W2 176 aa29.62■■■□□ 2.33
VEGFA-208ENST00000417285 TBX21Q9UL17 535 aa29.62■■■□□ 2.33
VEGFA-208ENST00000417285 DDX49Q9Y6V7 483 aaKnown RBP29.62■■■□□ 2.33
VEGFA-208ENST00000417285 IL25Q9H293 177 aa29.61■■■□□ 2.33
VEGFA-208ENST00000417285 TNKSO95271 1327 aa29.61■■■□□ 2.33
VEGFA-208ENST00000417285 LTBP2Q14767 1821 aa29.6■■■□□ 2.33
VEGFA-208ENST00000417285 PARP1P09874 1014 aaKnown RBP29.6■■■□□ 2.33
VEGFA-208ENST00000417285 TRDNQ13061 729 aa29.6■■■□□ 2.33
VEGFA-208ENST00000417285 CXCL17Q6UXB2 119 aa29.6■■■□□ 2.33
VEGFA-208ENST00000417285 SLC43A3Q8NBI5 491 aa29.6■■■□□ 2.33
VEGFA-208ENST00000417285 WDR11Q9BZH6 1224 aa29.6■■■□□ 2.33
VEGFA-208ENST00000417285 STXBP5LQ9Y2K9 1186 aa29.6■■■□□ 2.33
VEGFA-208ENST00000417285 RBM47A0AV96 593 aaKnown RBP29.59■■■□□ 2.33
VEGFA-208ENST00000417285 CHMLP26374 656 aa29.59■■■□□ 2.33
VEGFA-208ENST00000417285 SMAD3P84022 425 aaKnown RBP29.59■■■□□ 2.33
VEGFA-208ENST00000417285 PDE4DQ08499 809 aa29.59■■■□□ 2.33
VEGFA-208ENST00000417285 MFSD5Q6N075 450 aa29.59■■■□□ 2.33
VEGFA-208ENST00000417285 SLC30A10Q6XR72 485 aa29.59■■■□□ 2.33
VEGFA-208ENST00000417285 ADGRF4Q8IZF3 695 aa29.59■■■□□ 2.33
VEGFA-208ENST00000417285 U3KPZ7 1027 aaPredicted RBP29.59■■■□□ 2.33
VEGFA-208ENST00000417285 ABCB11O95342 1321 aa29.58■■■□□ 2.33
VEGFA-208ENST00000417285 COL6A3P12111 3177 aa29.58■■■□□ 2.33
VEGFA-208ENST00000417285 CDC37Q16543 378 aaPredicted RBP29.58■■■□□ 2.33
VEGFA-208ENST00000417285 USH1GQ495M9 461 aa29.58■■■□□ 2.33
VEGFA-208ENST00000417285 IFIT1BQ5T764 474 aaKnown RBP29.58■■■□□ 2.33
VEGFA-208ENST00000417285 FAM126BQ8IXS8 530 aa29.58■■■□□ 2.33
VEGFA-208ENST00000417285 CPVLQ9H3G5 476 aa29.58■■■□□ 2.33
VEGFA-208ENST00000417285 EDNRBP24530 442 aa29.57■■■□□ 2.32
VEGFA-208ENST00000417285 ITGA7Q13683 1181 aa29.57■■■□□ 2.32
VEGFA-208ENST00000417285 MCF2L2Q86YR7 1114 aa29.57■■■□□ 2.32
VEGFA-208ENST00000417285 A0A0C4DFX4 3053 aa29.56■■■□□ 2.32
VEGFA-208ENST00000417285 NKRFO15226 690 aaKnown RBP eCLIP29.56■■■□□ 2.324e-7■□□□□ 10.1
VEGFA-208ENST00000417285 EPHB4P54760 987 aa29.56■■■□□ 2.32
VEGFA-208ENST00000417285 BRDTQ58F21 947 aaPredicted RBP29.56■■■□□ 2.32
VEGFA-208ENST00000417285 RNPC3Q96LT9 517 aaKnown RBP29.56■■■□□ 2.32
VEGFA-208ENST00000417285 DHX16O60231 1041 aaKnown RBP29.55■■■□□ 2.32
VEGFA-208ENST00000417285 CD4P01730 458 aa29.55■■■□□ 2.32
VEGFA-208ENST00000417285 CPT1AP50416 773 aa29.55■■■□□ 2.32
VEGFA-208ENST00000417285 PPIGQ13427 754 aaKnown RBP eCLIP29.55■■■□□ 2.321e-7■■□□□ 12.5
VEGFA-208ENST00000417285 TMEM63BQ5T3F8 832 aa29.55■■■□□ 2.32
VEGFA-208ENST00000417285 ZNF697Q5TEC3 545 aa29.55■■■□□ 2.32
VEGFA-208ENST00000417285 TMEM199Q8N511 208 aa29.55■■■□□ 2.32
VEGFA-208ENST00000417285 SLC17A8Q8NDX2 589 aa29.55■■■□□ 2.32
VEGFA-208ENST00000417285 SCFD2Q8WU76 684 aa29.55■■■□□ 2.32
VEGFA-208ENST00000417285 POLR3EQ9NVU0 708 aa29.55■■■□□ 2.32
VEGFA-208ENST00000417285 MRPL11Q9Y3B7 192 aaKnown RBP29.55■■■□□ 2.32
VEGFA-208ENST00000417285 SEC23AQ15436 765 aa29.54■■■□□ 2.32
VEGFA-208ENST00000417285 FBXO11Q86XK2 927 aa29.54■■■□□ 2.32
VEGFA-208ENST00000417285 JMJD4Q9H9V9 463 aa29.54■■■□□ 2.32
VEGFA-208ENST00000417285 VAT1LQ9HCJ6 419 aa29.54■■■□□ 2.32
VEGFA-208ENST00000417285 CYP21A2P08686 494 aa29.52■■■□□ 2.32
VEGFA-208ENST00000417285 PTH1RQ03431 593 aa29.52■■■□□ 2.32
VEGFA-208ENST00000417285 PPP2R5BQ15173 497 aa29.52■■■□□ 2.32
VEGFA-208ENST00000417285 QRICH1Q2TAL8 776 aa29.52■■■□□ 2.32
VEGFA-208ENST00000417285 CYB5R4Q7L1T6 521 aa29.52■■■□□ 2.32
VEGFA-208ENST00000417285 NSUN6Q8TEA1 469 aaKnown RBP29.52■■■□□ 2.32
VEGFA-208ENST00000417285 GPHNQ9NQX3 736 aaPredicted RBP29.52■■■□□ 2.32
VEGFA-208ENST00000417285 GRIN2DO15399 1336 aa29.51■■■□□ 2.32
VEGFA-208ENST00000417285 KLRF2D3W0D1 207 aa29.51■■■□□ 2.31
VEGFA-208ENST00000417285 SGSM2O43147 1006 aa29.51■■■□□ 2.31
VEGFA-208ENST00000417285 KPNA6O60684 536 aa29.51■■■□□ 2.31
VEGFA-208ENST00000417285 PTGS1P23219 599 aa29.51■■■□□ 2.31
VEGFA-208ENST00000417285 IWS1Q96ST2 819 aa29.51■■■□□ 2.31
VEGFA-208ENST00000417285 HSFX4A0A1B0GTS1 333 aaPredicted RBP29.5■■■□□ 2.31
VEGFA-208ENST00000417285 HSFX3A0A1B0GWH4 333 aaPredicted RBP29.5■■■□□ 2.31
VEGFA-208ENST00000417285 ERICH2A1L162 156 aa29.5■■■□□ 2.31
VEGFA-208ENST00000417285 TTLL4Q14679 1199 aa29.5■■■□□ 2.31
VEGFA-208ENST00000417285 OR6J1Q8NGC5 347 aa29.5■■■□□ 2.31
VEGFA-208ENST00000417285 SYTL5Q8TDW5 730 aaPredicted RBP29.5■■■□□ 2.31
VEGFA-208ENST00000417285 TBC1D5Q92609 795 aa29.5■■■□□ 2.31
VEGFA-208ENST00000417285 AMNQ9BXJ7 453 aa29.5■■■□□ 2.31
VEGFA-208ENST00000417285 SEMA6BQ9H3T3 888 aa29.5■■■□□ 2.31
VEGFA-208ENST00000417285 TXNP10599 105 aaKnown RBP29.49■■■□□ 2.31
VEGFA-208ENST00000417285 TRAF1Q13077 416 aa29.49■■■□□ 2.31
VEGFA-208ENST00000417285 SART3Q15020 963 aaKnown RBP29.49■■■□□ 2.31
VEGFA-208ENST00000417285 RALYLQ86SE5 291 aaKnown RBP29.49■■■□□ 2.31
VEGFA-208ENST00000417285 STAG2Q8N3U4 1231 aa29.49■■■□□ 2.31
VEGFA-208ENST00000417285 MAP3K20Q9NYL2 800 aaKnown RBP29.49■■■□□ 2.31
VEGFA-208ENST00000417285 PALM3A6NDB9 673 aaPredicted RBP29.48■■■□□ 2.31
VEGFA-208ENST00000417285 A6NJR5 290 aa29.48■■■□□ 2.31
VEGFA-208ENST00000417285 IFIT3O14879 490 aaKnown RBP29.48■■■□□ 2.31
VEGFA-208ENST00000417285 SUPT20HL2P0C7V6 817 aa29.48■■■□□ 2.31
VEGFA-208ENST00000417285 CSF2RAP15509 400 aa29.48■■■□□ 2.31
VEGFA-208ENST00000417285 PURAQ00577 322 aaKnown RBP29.48■■■□□ 2.31
VEGFA-208ENST00000417285 NCOA7Q8NI08 942 aa29.48■■■□□ 2.31
VEGFA-208ENST00000417285 MAP4K1Q92918 833 aa29.48■■■□□ 2.31
VEGFA-208ENST00000417285 GUCD1Q96NT3 240 aa29.48■■■□□ 2.31
VEGFA-208ENST00000417285 TAAR1Q96RJ0 339 aa29.48■■■□□ 2.31
VEGFA-208ENST00000417285 RMDN3Q96TC7 470 aa29.48■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms