RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 KCNQ5Q9NR82 932 aa9.5□□□□□ -0.89
SYNE1-211ENST00000413186 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.5□□□□□ -0.89
SYNE1-211ENST00000413186 C4BP0C0L5 1744 aa9.5□□□□□ -0.89
SYNE1-211ENST00000413186 GOLGA6L10A0A0M3HER8 536 aa9.5□□□□□ -0.89
SYNE1-211ENST00000413186 GOLGA6L10A6NI86 522 aa9.5□□□□□ -0.89
SYNE1-211ENST00000413186 ZNF157P51786 506 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-211ENST00000413186 CDAN1Q8IWY9 1227 aa9.5□□□□□ -0.89
SYNE1-211ENST00000413186 PARK7Q99497 189 aaKnown RBP9.5□□□□□ -0.89
SYNE1-211ENST00000413186 CWC15Q9P013 229 aaKnown RBP9.5□□□□□ -0.89
SYNE1-211ENST00000413186 PCDHA7Q9UN72 937 aa9.5□□□□□ -0.89
SYNE1-211ENST00000413186 H0YCG3 227 aa9.5□□□□□ -0.89
SYNE1-211ENST00000413186 RHBDL3P58872 404 aa9.5□□□□□ -0.89
SYNE1-211ENST00000413186 SRBD1Q8N5C6 995 aaKnown RBP9.5□□□□□ -0.89
SYNE1-211ENST00000413186 RGS22Q8NE09 1264 aa9.5□□□□□ -0.89
SYNE1-211ENST00000413186 JPH2Q9BR39 696 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-211ENST00000413186 SYNPO2Q9UMS6 1093 aa9.5□□□□□ -0.89
SYNE1-211ENST00000413186 PFKFB1P16118 471 aa9.5□□□□□ -0.89
SYNE1-211ENST00000413186 POSTNQ15063 836 aa9.5□□□□□ -0.89
SYNE1-211ENST00000413186 HERC4Q5GLZ8 1057 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-211ENST00000413186 PRAMEF18Q5VWM3 479 aa9.5□□□□□ -0.89
SYNE1-211ENST00000413186 LDHDQ86WU2 507 aa9.5□□□□□ -0.89
SYNE1-211ENST00000413186 NLGN2Q8NFZ4 835 aa9.5□□□□□ -0.89
SYNE1-211ENST00000413186 PRIMPOLQ96LW4 560 aa9.5□□□□□ -0.89
SYNE1-211ENST00000413186 RMDN3Q96TC7 470 aa9.5□□□□□ -0.89
SYNE1-211ENST00000413186 GBA2Q9HCG7 927 aaPredicted RBP9.5□□□□□ -0.89
SYNE1-211ENST00000413186 PCDHA6Q9UN73 950 aa9.5□□□□□ -0.89
SYNE1-211ENST00000413186 PCDHA8Q9Y5H6 950 aa9.5□□□□□ -0.89
SYNE1-211ENST00000413186 DESP17661 470 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 SPECC1Q5M775 1068 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 NBPF12Q5TAG4 269 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-211ENST00000413186 STAG2Q8N3U4 1231 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 AP5M1Q9H0R1 490 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 CLIC4Q9Y696 253 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 ABCA3Q99758 1704 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 SHTN1A0MZ66 631 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 IBSPP21815 317 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-211ENST00000413186 HOXD10P28358 340 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 TROAPQ12815 778 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 STXBP2Q15833 593 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 UBE2SQ16763 222 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 TEX2Q8IWB9 1127 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 EXOC8Q8IYI6 725 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 GPATCH11Q8N954 259 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 LINC00301Q8NCQ3 95 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 GIMAP8Q8ND71 665 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-211ENST00000413186 DNAJC25Q9H1X3 360 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 CPVLQ9H3G5 476 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 ZKSCAN5Q9Y2L8 839 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 LTBP3Q9NS15 1303 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 CCDC169A6NNP5 214 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 CCDC172P0C7W6 258 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 EIF2AK2P19525 551 aaKnown RBP9.49□□□□□ -0.89
SYNE1-211ENST00000413186 GTF2A2P52657 109 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 STRN3Q13033 797 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 PKP1Q13835 747 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 SKIDA1Q1XH10 827 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-211ENST00000413186 FBXL16Q8N461 479 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 RIC8AQ9NPQ8 531 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 PRR12Q9ULL5 1215 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 TMX2Q9Y320 296 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 SLC25A27O95847 323 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 FCER1AP12319 257 aa9.49□□□□□ -0.89
SYNE1-211ENST00000413186 TTC12Q9H892 705 aaPredicted RBP9.49□□□□□ -0.89
SYNE1-211ENST00000413186 MYL5Q02045 173 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 SREBF2Q12772 1141 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 PTPN14Q15678 1187 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 GMCL1Q96IK5 515 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 FAM20AQ96MK3 541 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 PDGFDQ9GZP0 370 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-211ENST00000413186 LARSQ9P2J5 1176 aaKnown RBP9.48□□□□□ -0.89
SYNE1-211ENST00000413186 ARFGEF2Q9Y6D5 1785 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 M0QZ92 97 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 HOXA7P31268 230 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-211ENST00000413186 HOXA13P31271 388 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-211ENST00000413186 USP11P51784 963 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 BACE1P56817 501 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 IMPG2Q9BZV3 1241 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 STK17AQ9UEE5 414 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 SRPRBQ9Y5M8 271 aaKnown RBP9.48□□□□□ -0.89
SYNE1-211ENST00000413186 CCL15-CCL14A0A0B4J2E2 113 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 CNGA1P29973 690 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 SHMT1P34896 483 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 ECE1P42892 770 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 SNAP25P60880 206 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 TAF1CQ15572 869 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-211ENST00000413186 CCL15Q16663 113 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 TTBK2Q6IQ55 1244 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 MIS18BP1Q6P0N0 1132 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 CLEC10AQ8IUN9 316 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 AOPEPQ8N6M6 819 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 TRIML1Q8N9V2 468 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 GMCL1P1Q8NEA9 526 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 KIF18AQ8NI77 898 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 DDX4Q9NQI0 724 aaKnown RBP9.48□□□□□ -0.89
SYNE1-211ENST00000413186 SERTAD1Q9UHV2 236 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 BTAF1O14981 1849 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 CXCL11O14625 94 aa9.48□□□□□ -0.89
SYNE1-211ENST00000413186 GTPBP6O43824 516 aaPredicted RBP9.48□□□□□ -0.89
SYNE1-211ENST00000413186 MYL1P05976 194 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms