RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 LUZP1Q86V48 1076 aa14.71□□□□□ -0.05
SMARCB1-203ENST00000407082 MRFAP1L1Q96HT8 127 aa14.71□□□□□ -0.05
SMARCB1-203ENST00000407082 ZSCAN10Q96SZ4 725 aaPredicted RBP14.71□□□□□ -0.05
SMARCB1-203ENST00000407082 DNAJC25Q9H1X3 360 aa14.71□□□□□ -0.05
SMARCB1-203ENST00000407082 GOLPH3LQ9H4A5 285 aa14.71□□□□□ -0.05
SMARCB1-203ENST00000407082 ZNF287Q9HBT7 754 aa14.71□□□□□ -0.05
SMARCB1-203ENST00000407082 FAM13BQ9NYF5 915 aa14.71□□□□□ -0.05
SMARCB1-203ENST00000407082 GJD2Q9UKL4 321 aa14.71□□□□□ -0.05
SMARCB1-203ENST00000407082 ROBO3Q96MS0 1386 aa14.71□□□□□ -0.06
SMARCB1-203ENST00000407082 PFASO15067 1338 aa14.7□□□□□ -0.06
SMARCB1-203ENST00000407082 FAM237AA0A1B0GTK4 181 aa14.7□□□□□ -0.06
SMARCB1-203ENST00000407082 POTEB2H3BUK9 544 aa14.7□□□□□ -0.06
SMARCB1-203ENST00000407082 PRKAR2AP13861 404 aaKnown RBP14.7□□□□□ -0.06
SMARCB1-203ENST00000407082 CAP2P40123 477 aa14.7□□□□□ -0.06
SMARCB1-203ENST00000407082 SYKP43405 635 aa14.7□□□□□ -0.06
SMARCB1-203ENST00000407082 GCLCP48506 637 aaPredicted RBP14.7□□□□□ -0.06
SMARCB1-203ENST00000407082 SPP2Q13103 211 aa14.7□□□□□ -0.06
SMARCB1-203ENST00000407082 RRP1BQ14684 758 aaKnown RBP14.7□□□□□ -0.06
SMARCB1-203ENST00000407082 LRRC26Q2I0M4 334 aa14.7□□□□□ -0.06
SMARCB1-203ENST00000407082 PLA2G4DQ86XP0 818 aa14.7□□□□□ -0.06
SMARCB1-203ENST00000407082 NOSTRINQ8IVI9 506 aa14.7□□□□□ -0.06
SMARCB1-203ENST00000407082 TRIB2Q92519 343 aa14.7□□□□□ -0.06
SMARCB1-203ENST00000407082 PHKBQ93100 1093 aa14.7□□□□□ -0.06
SMARCB1-203ENST00000407082 INCENPQ9NQS7 918 aa14.7□□□□□ -0.06
SMARCB1-203ENST00000407082 FAM217BQ9NTX9 383 aaPredicted RBP14.7□□□□□ -0.06
SMARCB1-203ENST00000407082 TNKSO95271 1327 aa14.69□□□□□ -0.06
SMARCB1-203ENST00000407082 UNC80Q8N2C7 3258 aa14.69□□□□□ -0.06
SMARCB1-203ENST00000407082 A0A1B0GVL5 298 aa14.69□□□□□ -0.06
SMARCB1-203ENST00000407082 MPHOSPH10O00566 681 aaKnown RBP14.69□□□□□ -0.06
SMARCB1-203ENST00000407082 PRPF3O43395 683 aaKnown RBP14.69□□□□□ -0.06
SMARCB1-203ENST00000407082 NRDCO43847 1150 aa14.69□□□□□ -0.06
SMARCB1-203ENST00000407082 PRDM1O75626 825 aa14.69□□□□□ -0.06
SMARCB1-203ENST00000407082 GDF11O95390 407 aa14.69□□□□□ -0.06
SMARCB1-203ENST00000407082 NDUFA8P51970 172 aa14.69□□□□□ -0.06
SMARCB1-203ENST00000407082 HMGCS2P54868 508 aa14.69□□□□□ -0.06
SMARCB1-203ENST00000407082 NLRP12P59046 1061 aa14.69□□□□□ -0.06
SMARCB1-203ENST00000407082 NOLC1Q14978 699 aaKnown RBP eCLIP14.69□□□□□ -0.06
SMARCB1-203ENST00000407082 IQCB1Q15051 598 aa14.69□□□□□ -0.06
SMARCB1-203ENST00000407082 SEC23AQ15436 765 aa14.69□□□□□ -0.06
SMARCB1-203ENST00000407082 DNTTIP2Q5QJE6 756 aaKnown RBP14.69□□□□□ -0.06
SMARCB1-203ENST00000407082 FAM109BQ6ICB4 259 aaPredicted RBP14.69□□□□□ -0.06
SMARCB1-203ENST00000407082 RAB11FIP4Q86YS3 637 aa14.69□□□□□ -0.06
SMARCB1-203ENST00000407082 ZNF444Q8N0Y2 327 aaPredicted RBP14.69□□□□□ -0.06
SMARCB1-203ENST00000407082 KRI1Q8N9T8 703 aaKnown RBP14.69□□□□□ -0.06
SMARCB1-203ENST00000407082 ZNF579Q8NAF0 562 aaKnown RBP14.69□□□□□ -0.06
SMARCB1-203ENST00000407082 KIF28PB7ZC32 967 aa14.68□□□□□ -0.06
SMARCB1-203ENST00000407082 RANBP6O60518 1105 aaKnown RBP14.68□□□□□ -0.06
SMARCB1-203ENST00000407082 GH2P01242 217 aa14.68□□□□□ -0.06
SMARCB1-203ENST00000407082 KIF5BP33176 963 aa14.68□□□□□ -0.06
SMARCB1-203ENST00000407082 PABPC4Q13310 644 aaKnown RBP eCLIP14.68□□□□□ -0.06
SMARCB1-203ENST00000407082 ABCB5Q2M3G0 1257 aa14.68□□□□□ -0.06
SMARCB1-203ENST00000407082 AXDND1Q5T1B0 1012 aaPredicted RBP14.68□□□□□ -0.06
SMARCB1-203ENST00000407082 CCDC144CPQ8IYA2 1237 aa14.68□□□□□ -0.06
SMARCB1-203ENST00000407082 FAM177A1Q8N128 213 aaPredicted RBP14.68□□□□□ -0.06
SMARCB1-203ENST00000407082 MAFAQ8NHW3 353 aaPredicted RBP14.68□□□□□ -0.06
SMARCB1-203ENST00000407082 CTCFLQ8NI51 663 aaPredicted RBP14.68□□□□□ -0.06
SMARCB1-203ENST00000407082 NUP133Q8WUM0 1156 aa14.68□□□□□ -0.06
SMARCB1-203ENST00000407082 PRIMPOLQ96LW4 560 aa14.68□□□□□ -0.06
SMARCB1-203ENST00000407082 CCDC17Q96LX7 622 aa14.68□□□□□ -0.06
SMARCB1-203ENST00000407082 MAP3K14Q99558 947 aa14.68□□□□□ -0.06
SMARCB1-203ENST00000407082 CDX2Q99626 313 aaPredicted RBP14.68□□□□□ -0.06
SMARCB1-203ENST00000407082 FTOQ9C0B1 505 aaKnown RBP eCLIP14.68□□□□□ -0.06
SMARCB1-203ENST00000407082 ASCC2Q9H1I8 757 aaPredicted RBP14.68□□□□□ -0.06
SMARCB1-203ENST00000407082 CABP5Q9NP86 173 aa14.68□□□□□ -0.06
SMARCB1-203ENST00000407082 DACH1Q9UI36 760 aa14.68□□□□□ -0.06
SMARCB1-203ENST00000407082 TACC3Q9Y6A5 838 aa14.68□□□□□ -0.06
SMARCB1-203ENST00000407082 ASNSP08243 561 aa14.67□□□□□ -0.06
SMARCB1-203ENST00000407082 AKR1B1P15121 316 aa14.67□□□□□ -0.06
SMARCB1-203ENST00000407082 PFKFB1P16118 471 aa14.67□□□□□ -0.06
SMARCB1-203ENST00000407082 RXRAP19793 462 aa14.67□□□□□ -0.06
SMARCB1-203ENST00000407082 RASA1P20936 1047 aa14.67□□□□□ -0.06
SMARCB1-203ENST00000407082 GNAQP50148 359 aa14.67□□□□□ -0.06
SMARCB1-203ENST00000407082 GSDMDP57764 484 aa14.67□□□□□ -0.06
SMARCB1-203ENST00000407082 JAG1P78504 1218 aa14.67□□□□□ -0.06
SMARCB1-203ENST00000407082 PTPAQ15257 358 aa14.67□□□□□ -0.06
SMARCB1-203ENST00000407082 SHROOM1Q2M3G4 852 aaPredicted RBP14.67□□□□□ -0.06
SMARCB1-203ENST00000407082 RESP18Q5W5W9 173 aa14.67□□□□□ -0.06
SMARCB1-203ENST00000407082 DIS3L2Q8IYB7 885 aaKnown RBP14.67□□□□□ -0.06
SMARCB1-203ENST00000407082 PROCA1Q8NCQ7 364 aaPredicted RBP14.67□□□□□ -0.06
SMARCB1-203ENST00000407082 NUDT12Q9BQG2 462 aa14.67□□□□□ -0.06
SMARCB1-203ENST00000407082 PYM1Q9BRP8 204 aaKnown RBP14.67□□□□□ -0.06
SMARCB1-203ENST00000407082 GINM1Q9NU53 330 aa14.67□□□□□ -0.06
SMARCB1-203ENST00000407082 SPTLC3Q9NUV7 552 aa14.67□□□□□ -0.06
SMARCB1-203ENST00000407082 CLIP2Q9UDT6 1046 aa14.67□□□□□ -0.06
SMARCB1-203ENST00000407082 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.67□□□□□ -0.06
SMARCB1-203ENST00000407082 IKBKBO14920 756 aa14.66□□□□□ -0.06
SMARCB1-203ENST00000407082 PEX10O60683 326 aa14.66□□□□□ -0.06
SMARCB1-203ENST00000407082 PPFIA3O75145 1194 aa14.66□□□□□ -0.06
SMARCB1-203ENST00000407082 CCND3P30281 292 aaPredicted RBP14.66□□□□□ -0.06
SMARCB1-203ENST00000407082 KRT2P35908 639 aa14.66□□□□□ -0.06
SMARCB1-203ENST00000407082 CACNB2Q08289 660 aaPredicted RBP14.66□□□□□ -0.06
SMARCB1-203ENST00000407082 FAM47AQ5JRC9 791 aa14.66□□□□□ -0.06
SMARCB1-203ENST00000407082 ZNF280CQ8ND82 737 aa14.66□□□□□ -0.06
SMARCB1-203ENST00000407082 SENP6Q9GZR1 1112 aaPredicted RBP14.66□□□□□ -0.06
SMARCB1-203ENST00000407082 IMPACTQ9P2X3 320 aa14.66□□□□□ -0.06
SMARCB1-203ENST00000407082 PRKAG2Q9UGJ0 569 aa14.66□□□□□ -0.06
SMARCB1-203ENST00000407082 ZBTB21Q9ULJ3 1066 aa14.66□□□□□ -0.06
SMARCB1-203ENST00000407082 HPSEQ9Y251 543 aa14.66□□□□□ -0.06
SMARCB1-203ENST00000407082 TSPY2A6NKD2 308 aa14.65□□□□□ -0.06
SMARCB1-203ENST00000407082 USP17L5A8MUK1 530 aa14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms