RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 SMARCC2Q8TAQ2 1214 aa25.52■■□□□ 1.68
SHMT1-203ENST00000354098 RAET1EQ8TD07 263 aa25.52■■□□□ 1.68
SHMT1-203ENST00000354098 ZNF236Q9UL36 1845 aa25.52■■□□□ 1.68
SHMT1-203ENST00000354098 ZNFX1Q9P2E3 1918 aaKnown RBP25.52■■□□□ 1.68
SHMT1-203ENST00000354098 POTEB2H3BUK9 544 aa25.52■■□□□ 1.68
SHMT1-203ENST00000354098 HOXC6P09630 235 aa25.52■■□□□ 1.68
SHMT1-203ENST00000354098 HOXA13P31271 388 aaPredicted RBP25.52■■□□□ 1.68
SHMT1-203ENST00000354098 PRMT2P55345 433 aa25.52■■□□□ 1.68
SHMT1-203ENST00000354098 FAM133AQ8N9E0 248 aa25.52■■□□□ 1.68
SHMT1-203ENST00000354098 COL20A1Q9P218 1284 aa25.52■■□□□ 1.68
SHMT1-203ENST00000354098 K7ELQ4 463 aaPredicted RBP25.51■■□□□ 1.67
SHMT1-203ENST00000354098 HSD17B4P51659 736 aa25.51■■□□□ 1.67
SHMT1-203ENST00000354098 IRF5Q13568 498 aa25.51■■□□□ 1.67
SHMT1-203ENST00000354098 SYTL5Q8TDW5 730 aaPredicted RBP25.51■■□□□ 1.67
SHMT1-203ENST00000354098 FGD4Q96M96 766 aa25.51■■□□□ 1.67
SHMT1-203ENST00000354098 APBA2Q99767 749 aa25.51■■□□□ 1.67
SHMT1-203ENST00000354098 PSTPIP2Q9H939 334 aa25.51■■□□□ 1.67
SHMT1-203ENST00000354098 GJB4Q9NTQ9 266 aa25.51■■□□□ 1.67
SHMT1-203ENST00000354098 FLRT1Q9NZU1 646 aa25.51■■□□□ 1.67
SHMT1-203ENST00000354098 SOWAHBA6NEL2 793 aa25.5■■□□□ 1.67
SHMT1-203ENST00000354098 SMCO2A6NFE2 343 aa25.5■■□□□ 1.67
SHMT1-203ENST00000354098 XRCC5P13010 732 aaKnown RBP25.5■■□□□ 1.67
SHMT1-203ENST00000354098 ELNP15502 786 aa25.5■■□□□ 1.67
SHMT1-203ENST00000354098 PPP1R18Q6NYC8 613 aa25.5■■□□□ 1.67
SHMT1-203ENST00000354098 USP17L6PQ6QN14 398 aa25.5■■□□□ 1.67
SHMT1-203ENST00000354098 HTTP42858 3142 aa25.5■■□□□ 1.67
SHMT1-203ENST00000354098 ASTN1O14525 1302 aa25.5■■□□□ 1.67
SHMT1-203ENST00000354098 GCOM1H8Y6P7 765 aaPredicted RBP25.49■■□□□ 1.67
SHMT1-203ENST00000354098 MEIS2O14770 477 aa25.49■■□□□ 1.67
SHMT1-203ENST00000354098 ADAMTS3O15072 1205 aa25.49■■□□□ 1.67
SHMT1-203ENST00000354098 ADCY3O60266 1144 aa25.49■■□□□ 1.67
SHMT1-203ENST00000354098 POLR2MP0CAP2 368 aa25.49■■□□□ 1.67
SHMT1-203ENST00000354098 GHRHRQ02643 423 aa25.49■■□□□ 1.67
SHMT1-203ENST00000354098 MAML3Q96JK9 1138 aa25.49■■□□□ 1.67
SHMT1-203ENST00000354098 CUL4AQ13619 759 aa25.48■■□□□ 1.67
SHMT1-203ENST00000354098 TRIB2Q92519 343 aa25.48■■□□□ 1.67
SHMT1-203ENST00000354098 TAAR1Q96RJ0 339 aa25.48■■□□□ 1.67
SHMT1-203ENST00000354098 ALG1Q9BT22 464 aa25.48■■□□□ 1.67
SHMT1-203ENST00000354098 SLC5A4Q9NY91 659 aa25.48■■□□□ 1.67
SHMT1-203ENST00000354098 DDX49Q9Y6V7 483 aaKnown RBP25.48■■□□□ 1.67
SHMT1-203ENST00000354098 UBE2SQ16763 222 aa25.48■■□□□ 1.67
SHMT1-203ENST00000354098 HSCBQ8IWL3 235 aa25.48■■□□□ 1.67
SHMT1-203ENST00000354098 RIC8AQ9NPQ8 531 aa25.48■■□□□ 1.67
SHMT1-203ENST00000354098 SH3GLB2Q9NR46 395 aa25.48■■□□□ 1.67
SHMT1-203ENST00000354098 DIS3Q9Y2L1 958 aaKnown RBP25.48■■□□□ 1.67
SHMT1-203ENST00000354098 LCTP09848 1927 aa25.47■■□□□ 1.67
SHMT1-203ENST00000354098 ADCY7P51828 1080 aa25.47■■□□□ 1.67
SHMT1-203ENST00000354098 PKN2Q16513 984 aaKnown RBP25.47■■□□□ 1.67
SHMT1-203ENST00000354098 FBXO46Q6PJ61 603 aaPredicted RBP25.47■■□□□ 1.67
SHMT1-203ENST00000354098 FCHSD1Q86WN1 690 aa25.47■■□□□ 1.67
SHMT1-203ENST00000354098 WASF1Q92558 559 aa25.47■■□□□ 1.67
SHMT1-203ENST00000354098 MAF1Q9H063 256 aa25.47■■□□□ 1.67
SHMT1-203ENST00000354098 ZMYND12Q9H0C1 365 aa25.47■■□□□ 1.67
SHMT1-203ENST00000354098 MAP3K20Q9NYL2 800 aaKnown RBP25.47■■□□□ 1.67
SHMT1-203ENST00000354098 RBBP6Q7Z6E9 1792 aaKnown RBP25.47■■□□□ 1.67
SHMT1-203ENST00000354098 PIK3CDO00329 1044 aa25.46■■□□□ 1.67
SHMT1-203ENST00000354098 FOSBP53539 338 aa25.46■■□□□ 1.67
SHMT1-203ENST00000354098 COL13A1Q5TAT6 717 aaPredicted RBP25.46■■□□□ 1.67
SHMT1-203ENST00000354098 CCDC12Q8WUD4 166 aaPredicted RBP25.46■■□□□ 1.67
SHMT1-203ENST00000354098 CUL5Q93034 780 aa25.46■■□□□ 1.67
SHMT1-203ENST00000354098 KCNJ14Q9UNX9 436 aa25.46■■□□□ 1.67
SHMT1-203ENST00000354098 HMGN5P82970 282 aaKnown RBP25.45■■□□□ 1.67
SHMT1-203ENST00000354098 SAMD3Q8N6K7 520 aa25.45■■□□□ 1.67
SHMT1-203ENST00000354098 PXYLP1Q8TE99 480 aa25.45■■□□□ 1.67
SHMT1-203ENST00000354098 SH3TC2Q8TF17 1288 aa25.45■■□□□ 1.67
SHMT1-203ENST00000354098 MCOLN1Q9GZU1 580 aa25.45■■□□□ 1.67
SHMT1-203ENST00000354098 PLXNA1Q9UIW2 1896 aa25.45■■□□□ 1.66
SHMT1-203ENST00000354098 ESYT2A0FGR8 921 aa25.45■■□□□ 1.66
SHMT1-203ENST00000354098 IGHA2P01877 340 aa25.45■■□□□ 1.66
SHMT1-203ENST00000354098 GRK4P32298 578 aa25.45■■□□□ 1.66
SHMT1-203ENST00000354098 MRPL12P52815 198 aaKnown RBP25.45■■□□□ 1.66
SHMT1-203ENST00000354098 NLRP5P59047 1200 aa25.45■■□□□ 1.66
SHMT1-203ENST00000354098 TRIM32Q13049 653 aa25.45■■□□□ 1.66
SHMT1-203ENST00000354098 CCDC148Q8NFR7 591 aa25.45■■□□□ 1.66
SHMT1-203ENST00000354098 C6orf50Q9HD87 102 aa25.45■■□□□ 1.66
SHMT1-203ENST00000354098 CYP2C19P33261 490 aa25.44■■□□□ 1.66
SHMT1-203ENST00000354098 ALDH5A1P51649 535 aaPredicted RBP25.44■■□□□ 1.66
SHMT1-203ENST00000354098 OLFML2BQ68BL8 750 aa25.44■■□□□ 1.66
SHMT1-203ENST00000354098 SLAIN1Q8ND83 568 aa25.44■■□□□ 1.66
SHMT1-203ENST00000354098 RMDN3Q96TC7 470 aa25.44■■□□□ 1.66
SHMT1-203ENST00000354098 FOXD4L1Q9NU39 408 aa25.44■■□□□ 1.66
SHMT1-203ENST00000354098 TMEM260Q9NX78 707 aa25.44■■□□□ 1.66
SHMT1-203ENST00000354098 BIN2Q9UBW5 565 aaPredicted RBP25.44■■□□□ 1.66
SHMT1-203ENST00000354098 ZSCAN21Q9Y5A6 473 aaPredicted RBP25.44■■□□□ 1.66
SHMT1-203ENST00000354098 CENPFP49454 3210 aa25.44■■□□□ 1.66
SHMT1-203ENST00000354098 GJB2P29033 226 aa25.43■■□□□ 1.66
SHMT1-203ENST00000354098 NPY5RQ15761 445 aa25.43■■□□□ 1.66
SHMT1-203ENST00000354098 ZNF467Q7Z7K2 595 aaPredicted RBP25.43■■□□□ 1.66
SHMT1-203ENST00000354098 FAM184AQ8NB25 1140 aa25.43■■□□□ 1.66
SHMT1-203ENST00000354098 TINF2Q9BSI4 451 aa25.43■■□□□ 1.66
SHMT1-203ENST00000354098 PHF20Q9BVI0 1012 aa25.43■■□□□ 1.66
SHMT1-203ENST00000354098 ADD3Q9UEY8 706 aaKnown RBP25.43■■□□□ 1.66
SHMT1-203ENST00000354098 MAMDC4Q6UXC1 1216 aa25.42■■□□□ 1.66
SHMT1-203ENST00000354098 DNERQ8NFT8 737 aa25.42■■□□□ 1.66
SHMT1-203ENST00000354098 SMC3Q9UQE7 1217 aa25.42■■□□□ 1.66
SHMT1-203ENST00000354098 XBP1P17861 261 aa25.42■■□□□ 1.66
SHMT1-203ENST00000354098 EIF2AK2P19525 551 aaKnown RBP25.42■■□□□ 1.66
SHMT1-203ENST00000354098 GNA11P29992 359 aa25.42■■□□□ 1.66
SHMT1-203ENST00000354098 CLK2P49760 499 aaKnown RBP25.42■■□□□ 1.66
SHMT1-203ENST00000354098 UBXN2AP68543 259 aa25.42■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms