RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 RASGRP4Q8TDF6 673 aa10.54□□□□□ -0.72
ATG4A-202ENST00000345734 STK32AQ8WU08 396 aa10.54□□□□□ -0.72
ATG4A-202ENST00000345734 TRIM44Q96DX7 344 aaPredicted RBP10.54□□□□□ -0.72
ATG4A-202ENST00000345734 MAP7D2Q96T17 732 aa10.54□□□□□ -0.72
ATG4A-202ENST00000345734 LZTS2Q9BRK4 669 aa10.54□□□□□ -0.72
ATG4A-202ENST00000345734 UBA5Q9GZZ9 404 aa10.54□□□□□ -0.72
ATG4A-202ENST00000345734 VAT1LQ9HCJ6 419 aa10.54□□□□□ -0.72
ATG4A-202ENST00000345734 RRAGDQ9NQL2 400 aaPredicted RBP10.54□□□□□ -0.72
ATG4A-202ENST00000345734 FAM237AA0A1B0GTK4 181 aa10.54□□□□□ -0.72
ATG4A-202ENST00000345734 TMEM88BA6NKF7 163 aa10.54□□□□□ -0.72
ATG4A-202ENST00000345734 STXBP3O00186 592 aa10.54□□□□□ -0.72
ATG4A-202ENST00000345734 TTLL1O95922 423 aa10.54□□□□□ -0.72
ATG4A-202ENST00000345734 ATP2B2Q01814 1243 aa10.54□□□□□ -0.72
ATG4A-202ENST00000345734 C11orf57Q6ZUT1 292 aaPredicted RBP10.54□□□□□ -0.72
ATG4A-202ENST00000345734 HOMER1Q86YM7 354 aa10.54□□□□□ -0.72
ATG4A-202ENST00000345734 BLIDQ8IZY5 108 aa10.54□□□□□ -0.72
ATG4A-202ENST00000345734 SPZ1Q9BXG8 430 aa10.54□□□□□ -0.72
ATG4A-202ENST00000345734 DHX36Q9H2U1 1008 aaKnown RBP10.54□□□□□ -0.72
ATG4A-202ENST00000345734 SH3GLB2Q9NR46 395 aa10.54□□□□□ -0.72
ATG4A-202ENST00000345734 PI4KBQ9UBF8 816 aa10.54□□□□□ -0.72
ATG4A-202ENST00000345734 USTQ9Y2C2 406 aa10.54□□□□□ -0.72
ATG4A-202ENST00000345734 PCDHB9Q9Y5E1 797 aa10.54□□□□□ -0.72
ATG4A-202ENST00000345734 BRCA1P38398 1863 aaKnown RBP10.53□□□□□ -0.72
ATG4A-202ENST00000345734 DXOO77932 396 aaKnown RBP10.53□□□□□ -0.72
ATG4A-202ENST00000345734 VIL1P09327 827 aaKnown RBP10.53□□□□□ -0.72
ATG4A-202ENST00000345734 STX1AQ16623 288 aa10.53□□□□□ -0.72
ATG4A-202ENST00000345734 TTC38Q5R3I4 469 aa10.53□□□□□ -0.72
ATG4A-202ENST00000345734 SMAP1Q8IYB5 467 aaPredicted RBP10.53□□□□□ -0.72
ATG4A-202ENST00000345734 PIGSQ96S52 555 aa10.53□□□□□ -0.72
ATG4A-202ENST00000345734 GMLQ99445 158 aa10.53□□□□□ -0.72
ATG4A-202ENST00000345734 EVA1BQ9NVM1 165 aa10.53□□□□□ -0.72
ATG4A-202ENST00000345734 BARHL2Q9NY43 387 aa10.53□□□□□ -0.72
ATG4A-202ENST00000345734 PIM2Q9P1W9 311 aa10.53□□□□□ -0.72
ATG4A-202ENST00000345734 KCNH3Q9ULD8 1083 aa10.53□□□□□ -0.72
ATG4A-202ENST00000345734 NOL7Q9UMY1 257 aaKnown RBP10.53□□□□□ -0.72
ATG4A-202ENST00000345734 PCDHA4Q9UN74 947 aa10.53□□□□□ -0.72
ATG4A-202ENST00000345734 CEP131Q9UPN4 1083 aa10.53□□□□□ -0.72
ATG4A-202ENST00000345734 SRPRBQ9Y5M8 271 aaKnown RBP10.53□□□□□ -0.72
ATG4A-202ENST00000345734 M0R2N6 131 aa10.52□□□□□ -0.72
ATG4A-202ENST00000345734 ADCY5O95622 1261 aa10.52□□□□□ -0.72
ATG4A-202ENST00000345734 CALML3P27482 149 aa10.52□□□□□ -0.72
ATG4A-202ENST00000345734 ZNF165P49910 485 aa10.52□□□□□ -0.72
ATG4A-202ENST00000345734 LONRF3Q496Y0 759 aa10.52□□□□□ -0.72
ATG4A-202ENST00000345734 USP49Q70CQ1 688 aa10.52□□□□□ -0.72
ATG4A-202ENST00000345734 CSRNP2Q9H175 543 aa10.52□□□□□ -0.72
ATG4A-202ENST00000345734 PPP1R1BQ9UD71 204 aaPredicted RBP10.52□□□□□ -0.72
ATG4A-202ENST00000345734 FER1L6Q2WGJ9 1857 aa10.52□□□□□ -0.72
ATG4A-202ENST00000345734 CLRN2A0PK11 232 aa10.52□□□□□ -0.73
ATG4A-202ENST00000345734 SNHG28P0DPA3 235 aa10.52□□□□□ -0.73
ATG4A-202ENST00000345734 TGFB2P61812 414 aa10.52□□□□□ -0.73
ATG4A-202ENST00000345734 CERKLQ49MI3 558 aaPredicted RBP10.52□□□□□ -0.73
ATG4A-202ENST00000345734 THSD4Q6ZMP0 1018 aa10.52□□□□□ -0.73
ATG4A-202ENST00000345734 CCDC125Q86Z20 511 aa10.52□□□□□ -0.73
ATG4A-202ENST00000345734 RRP36Q96EU6 259 aaKnown RBP10.52□□□□□ -0.73
ATG4A-202ENST00000345734 TIGD1Q96MW7 591 aa10.52□□□□□ -0.73
ATG4A-202ENST00000345734 VRTNQ9H8Y1 702 aa10.52□□□□□ -0.73
ATG4A-202ENST00000345734 PCDHA6Q9UN73 950 aa10.52□□□□□ -0.73
ATG4A-202ENST00000345734 PCDHA8Q9Y5H6 950 aa10.52□□□□□ -0.73
ATG4A-202ENST00000345734 TCP10L2B9ZVM9 353 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 BIN1O00499 593 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 ATG7O95352 703 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 GDF11O95390 407 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 POLD1P28340 1107 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 NAPAP54920 295 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 R3HDM1Q15032 1099 aaKnown RBP10.51□□□□□ -0.73
ATG4A-202ENST00000345734 ASPRV1Q53RT3 343 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 DALRD3Q5D0E6 543 aaKnown RBP10.51□□□□□ -0.73
ATG4A-202ENST00000345734 TTBK2Q6IQ55 1244 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 NIM1KQ8IY84 436 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 CCDC148Q8NFR7 591 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 CCDC17Q96LX7 622 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 MTFR1LQ9H019 292 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 RIOX1Q9H6W3 641 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 ZMIZ1Q9ULJ6 1067 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 ZNRF3Q9ULT6 936 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 FOXN1O15353 648 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 POLR2DO15514 142 aaKnown RBP10.51□□□□□ -0.73
ATG4A-202ENST00000345734 ENTPD3O75355 529 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 SMARCA1P28370 1054 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 MCM7P33993 719 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 JAG1P78504 1218 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 ZNF543Q08ER8 600 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 KCNH2Q12809 1159 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 PNOCQ13519 176 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 RRP1BQ14684 758 aaKnown RBP10.51□□□□□ -0.73
ATG4A-202ENST00000345734 SEPT2Q15019 361 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 IQCB1Q15051 598 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 MSS51Q4VC12 460 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 PTCRAQ6ISU1 281 aaPredicted RBP10.51□□□□□ -0.73
ATG4A-202ENST00000345734 TATDN1Q6P1N9 297 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 METTL16Q86W50 562 aaKnown RBP10.51□□□□□ -0.73
ATG4A-202ENST00000345734 FOXP4Q8IVH2 680 aaPredicted RBP10.51□□□□□ -0.73
ATG4A-202ENST00000345734 DAGLBQ8NCG7 672 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 ANO10Q9NW15 660 aa10.51□□□□□ -0.73
ATG4A-202ENST00000345734 SEC63Q9UGP8 760 aaKnown RBP10.51□□□□□ -0.73
ATG4A-202ENST00000345734 ATRNL1Q5VV63 1379 aa10.5□□□□□ -0.73
ATG4A-202ENST00000345734 EEF2P13639 858 aaKnown RBP10.5□□□□□ -0.73
ATG4A-202ENST00000345734 TRAPPC10P48553 1259 aa10.5□□□□□ -0.73
ATG4A-202ENST00000345734 ATP2C1P98194 919 aaPredicted RBP10.5□□□□□ -0.73
ATG4A-202ENST00000345734 CXCL9Q07325 125 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms