RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 DTHD1Q6ZMT9 781 aa24.92■■□□□ 1.58
TRIM28-202ENST00000341753 BARGINQ6ZT62 677 aa24.92■■□□□ 1.58
TRIM28-202ENST00000341753 NOC4LQ9BVI4 516 aaKnown RBP24.92■■□□□ 1.58
TRIM28-202ENST00000341753 BAZ2AQ9UIF9 1905 aaKnown RBP24.92■■□□□ 1.58
TRIM28-202ENST00000341753 GRIN2DO15399 1336 aa24.92■■□□□ 1.58
TRIM28-202ENST00000341753 DDAH1O94760 285 aa24.92■■□□□ 1.58
TRIM28-202ENST00000341753 ERLIN2O94905 339 aa24.92■■□□□ 1.58
TRIM28-202ENST00000341753 UBA7P41226 1012 aa24.92■■□□□ 1.58
TRIM28-202ENST00000341753 SPA17Q15506 151 aa24.92■■□□□ 1.58
TRIM28-202ENST00000341753 BLIDQ8IZY5 108 aa24.92■■□□□ 1.58
TRIM28-202ENST00000341753 SPATA4Q8NEY3 305 aa24.92■■□□□ 1.58
TRIM28-202ENST00000341753 PURBQ96QR8 312 aaKnown RBP24.92■■□□□ 1.58
TRIM28-202ENST00000341753 CYP2D6P10635 497 aa24.91■■□□□ 1.58
TRIM28-202ENST00000341753 SF3B3Q15393 1217 aaKnown RBP24.91■■□□□ 1.58
TRIM28-202ENST00000341753 FBXW10Q5XX13 1052 aa24.91■■□□□ 1.58
TRIM28-202ENST00000341753 KCTD16Q68DU8 428 aa24.91■■□□□ 1.58
TRIM28-202ENST00000341753 SH2D3CQ8N5H7 860 aa24.91■■□□□ 1.58
TRIM28-202ENST00000341753 GIMAP8Q8ND71 665 aaPredicted RBP24.91■■□□□ 1.58
TRIM28-202ENST00000341753 EPHB6O15197 1021 aa24.91■■□□□ 1.58
TRIM28-202ENST00000341753 FCER1AP12319 257 aa24.91■■□□□ 1.58
TRIM28-202ENST00000341753 IQCEQ6IPM2 695 aa24.91■■□□□ 1.58
TRIM28-202ENST00000341753 TXNRD3Q86VQ6 643 aa24.91■■□□□ 1.58
TRIM28-202ENST00000341753 C2CD5Q86YS7 1000 aa24.91■■□□□ 1.58
TRIM28-202ENST00000341753 IFIH1Q9BYX4 1025 aaKnown RBP24.91■■□□□ 1.58
TRIM28-202ENST00000341753 INF2Q27J81 1249 aa24.9■■□□□ 1.58
TRIM28-202ENST00000341753 ARL6IP4Q66PJ3 421 aaKnown RBP24.9■■□□□ 1.58
TRIM28-202ENST00000341753 CLEC4GQ6UXB4 293 aa24.9■■□□□ 1.58
TRIM28-202ENST00000341753 CCDC170Q8IYT3 715 aa24.9■■□□□ 1.58
TRIM28-202ENST00000341753 NGLY1Q96IV0 654 aa24.9■■□□□ 1.58
TRIM28-202ENST00000341753 FAM207AQ9NSI2 230 aaPredicted RBP24.9■■□□□ 1.58
TRIM28-202ENST00000341753 GNPATO15228 680 aa24.9■■□□□ 1.58
TRIM28-202ENST00000341753 EIF3HO15372 352 aaKnown RBP eCLIP24.9■■□□□ 1.582e-12■■□□□ 11.9
TRIM28-202ENST00000341753 GUCY2CP25092 1073 aa24.9■■□□□ 1.58
TRIM28-202ENST00000341753 ATP1A2P50993 1020 aa24.9■■□□□ 1.58
TRIM28-202ENST00000341753 DNA2P51530 1060 aa24.9■■□□□ 1.58
TRIM28-202ENST00000341753 STK4Q13043 487 aa24.9■■□□□ 1.58
TRIM28-202ENST00000341753 PDCLQ13371 301 aa24.9■■□□□ 1.58
TRIM28-202ENST00000341753 UBE4AQ14139 1066 aa24.9■■□□□ 1.58
TRIM28-202ENST00000341753 TTMPQ5BVD1 217 aa24.9■■□□□ 1.58
TRIM28-202ENST00000341753 ZNF662Q6ZS27 426 aa24.9■■□□□ 1.58
TRIM28-202ENST00000341753 DUOX1Q9NRD9 1551 aa24.9■■□□□ 1.58
TRIM28-202ENST00000341753 EP400Q96L91 3159 aa24.89■■□□□ 1.58
TRIM28-202ENST00000341753 RHOBTB3O94955 611 aa24.89■■□□□ 1.58
TRIM28-202ENST00000341753 CPP00450 1065 aa24.89■■□□□ 1.58
TRIM28-202ENST00000341753 PRDX5P30044 214 aa24.89■■□□□ 1.58
TRIM28-202ENST00000341753 PDE4DQ08499 809 aa24.89■■□□□ 1.58
TRIM28-202ENST00000341753 MIIPQ5JXC2 388 aa24.89■■□□□ 1.58
TRIM28-202ENST00000341753 AMOTL1Q8IY63 956 aa24.89■■□□□ 1.58
TRIM28-202ENST00000341753 ATP2B2Q01814 1243 aa24.89■■□□□ 1.57
TRIM28-202ENST00000341753 NBPF5PQ86XG9 351 aaPredicted RBP24.89■■□□□ 1.57
TRIM28-202ENST00000341753 MMGT1Q8N4V1 131 aa24.89■■□□□ 1.57
TRIM28-202ENST00000341753 P2RX5Q93086 422 aa24.89■■□□□ 1.57
TRIM28-202ENST00000341753 DEF6Q9H4E7 631 aa24.89■■□□□ 1.57
TRIM28-202ENST00000341753 ARHGAP20Q9P2F6 1191 aa24.89■■□□□ 1.57
TRIM28-202ENST00000341753 PCDHA13Q9Y5I0 950 aa24.89■■□□□ 1.57
TRIM28-202ENST00000341753 TACC1O75410 805 aa24.88■■□□□ 1.57
TRIM28-202ENST00000341753 KCNB1Q14721 858 aa24.88■■□□□ 1.57
TRIM28-202ENST00000341753 OSBPL9Q96SU4 736 aa24.88■■□□□ 1.57
TRIM28-202ENST00000341753 ZPR1O75312 459 aa24.88■■□□□ 1.57
TRIM28-202ENST00000341753 PPARDQ03181 441 aa24.88■■□□□ 1.57
TRIM28-202ENST00000341753 NUP58Q9BVL2 599 aa24.88■■□□□ 1.57
TRIM28-202ENST00000341753 CCDC194A0A1B0GVG4 234 aa24.87■■□□□ 1.57
TRIM28-202ENST00000341753 SHTN1A0MZ66 631 aa24.87■■□□□ 1.57
TRIM28-202ENST00000341753 MECOMQ03112 1051 aa24.87■■□□□ 1.57
TRIM28-202ENST00000341753 CCDC181Q5TID7 509 aa24.87■■□□□ 1.57
TRIM28-202ENST00000341753 STAG2Q8N3U4 1231 aa24.87■■□□□ 1.57
TRIM28-202ENST00000341753 FNBP4Q8N3X1 1017 aaPredicted RBP24.87■■□□□ 1.57
TRIM28-202ENST00000341753 TRIM58Q8NG06 486 aa24.87■■□□□ 1.57
TRIM28-202ENST00000341753 SH2D4AQ9H788 454 aa24.87■■□□□ 1.57
TRIM28-202ENST00000341753 PLCG1P19174 1290 aa24.87■■□□□ 1.57
TRIM28-202ENST00000341753 EIF4A3P38919 411 aaKnown RBP24.87■■□□□ 1.57
TRIM28-202ENST00000341753 RPS8P62241 208 aaKnown RBP24.87■■□□□ 1.57
TRIM28-202ENST00000341753 MMS22LQ6ZRQ5 1243 aa24.87■■□□□ 1.57
TRIM28-202ENST00000341753 MS4A14Q96JA4 679 aa24.87■■□□□ 1.57
TRIM28-202ENST00000341753 KBTBD4Q9NVX7 518 aa24.87■■□□□ 1.57
TRIM28-202ENST00000341753 SALL4Q9UJQ4 1053 aa24.87■■□□□ 1.57
TRIM28-202ENST00000341753 RREB1Q92766 1687 aa24.87■■□□□ 1.57
TRIM28-202ENST00000341753 ASIC1P78348 528 aa24.86■■□□□ 1.57
TRIM28-202ENST00000341753 HAUS3Q68CZ6 603 aa24.86■■□□□ 1.57
TRIM28-202ENST00000341753 RUFY1Q96T51 708 aa24.86■■□□□ 1.57
TRIM28-202ENST00000341753 SETDB2Q96T68 719 aa24.86■■□□□ 1.57
TRIM28-202ENST00000341753 ESYT3A0FGR9 886 aa24.86■■□□□ 1.57
TRIM28-202ENST00000341753 KRT14P02533 472 aa24.86■■□□□ 1.57
TRIM28-202ENST00000341753 KIF11P52732 1056 aa24.86■■□□□ 1.57
TRIM28-202ENST00000341753 ZSCAN5CA6NGD5 496 aaPredicted RBP24.85■■□□□ 1.57
TRIM28-202ENST00000341753 USO1O60763 962 aaKnown RBP24.85■■□□□ 1.57
TRIM28-202ENST00000341753 RBM12Q9NTZ6 932 aaKnown RBP24.85■■□□□ 1.57
TRIM28-202ENST00000341753 CACNA1SQ13698 1873 aa24.85■■□□□ 1.57
TRIM28-202ENST00000341753 TSPY2A6NKD2 308 aa24.85■■□□□ 1.57
TRIM28-202ENST00000341753 GOLGA8KD6RF30 607 aa24.85■■□□□ 1.57
TRIM28-202ENST00000341753 BUB1O43683 1085 aa24.85■■□□□ 1.57
TRIM28-202ENST00000341753 ZEB2O60315 1214 aa24.85■■□□□ 1.57
TRIM28-202ENST00000341753 CCNE1P24864 410 aa24.85■■□□□ 1.57
TRIM28-202ENST00000341753 NSUN4Q96CB9 384 aaKnown RBP24.85■■□□□ 1.57
TRIM28-202ENST00000341753 GPR101Q96P66 508 aaPredicted RBP24.85■■□□□ 1.57
TRIM28-202ENST00000341753 SH3GL2Q99962 352 aa24.85■■□□□ 1.57
TRIM28-202ENST00000341753 TSGA10Q9BZW7 698 aa24.85■■□□□ 1.57
TRIM28-202ENST00000341753 PCDHA4Q9UN74 947 aa24.85■■□□□ 1.57
TRIM28-202ENST00000341753 RETREG2Q8NC44 543 aa24.85■■□□□ 1.57
TRIM28-202ENST00000341753 DHTKD1Q96HY7 919 aaPredicted RBP24.85■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms