RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 BACH1O14867 736 aa13.27□□□□□ -0.29
USP1-201ENST00000339950 ALX1Q15699 326 aa13.27□□□□□ -0.29
USP1-201ENST00000339950 NFRKBQ6P4R8 1299 aa13.27□□□□□ -0.29
USP1-201ENST00000339950 ALS2CR12Q96Q35 445 aa13.27□□□□□ -0.29
USP1-201ENST00000339950 PLA2G12BQ9BX93 195 aa13.27□□□□□ -0.29
USP1-201ENST00000339950 ARPP21Q9UBL0 812 aaPredicted RBP13.27□□□□□ -0.29
USP1-201ENST00000339950 H3BQF6 201 aa13.26□□□□□ -0.29
USP1-201ENST00000339950 TBC1D8O95759 1140 aa13.26□□□□□ -0.29
USP1-201ENST00000339950 H2AFXP16104 143 aaPredicted RBP13.26□□□□□ -0.29
USP1-201ENST00000339950 HOXA13P31271 388 aaPredicted RBP13.26□□□□□ -0.29
USP1-201ENST00000339950 CDK8P49336 464 aa13.26□□□□□ -0.29
USP1-201ENST00000339950 MAP3K9P80192 1104 aa13.26□□□□□ -0.29
USP1-201ENST00000339950 NKX1-1Q15270 411 aaPredicted RBP13.26□□□□□ -0.29
USP1-201ENST00000339950 MB21D1Q8N884 522 aa13.26□□□□□ -0.29
USP1-201ENST00000339950 MS4A14Q96JA4 679 aa13.26□□□□□ -0.29
USP1-201ENST00000339950 LSM14BQ9BX40 385 aaKnown RBP13.26□□□□□ -0.29
USP1-201ENST00000339950 ANKRD2Q9GZV1 360 aa13.26□□□□□ -0.29
USP1-201ENST00000339950 USP40Q9NVE5 1235 aa13.26□□□□□ -0.29
USP1-201ENST00000339950 BSDC1Q9NW68 430 aaPredicted RBP13.26□□□□□ -0.29
USP1-201ENST00000339950 GGA1Q9UJY5 639 aa13.26□□□□□ -0.29
USP1-201ENST00000339950 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.26□□□□□ -0.29
USP1-201ENST00000339950 CDR1P51861 262 aa13.26□□□□□ -0.29
USP1-201ENST00000339950 SEC23AQ15436 765 aa13.26□□□□□ -0.29
USP1-201ENST00000339950 EZH2Q15910 746 aaKnown RBP13.26□□□□□ -0.29
USP1-201ENST00000339950 E2F4Q16254 413 aa13.26□□□□□ -0.29
USP1-201ENST00000339950 PFKFB3Q16875 520 aaPredicted RBP13.26□□□□□ -0.29
USP1-201ENST00000339950 GLIS3Q8NEA6 775 aa13.26□□□□□ -0.29
USP1-201ENST00000339950 H7C1D1 291 aa13.26□□□□□ -0.29
USP1-201ENST00000339950 GFPT1Q06210 699 aaPredicted RBP13.26□□□□□ -0.29
USP1-201ENST00000339950 ARHGEF1Q92888 912 aaKnown RBP13.26□□□□□ -0.29
USP1-201ENST00000339950 ADAMTS1Q9UHI8 967 aa13.26□□□□□ -0.29
USP1-201ENST00000339950 E9PMD0 336 aa13.25□□□□□ -0.29
USP1-201ENST00000339950 IRX5P78411 483 aaPredicted RBP13.25□□□□□ -0.29
USP1-201ENST00000339950 ZNF526Q8TF50 670 aaPredicted RBP13.25□□□□□ -0.29
USP1-201ENST00000339950 P2RX5Q93086 422 aa13.25□□□□□ -0.29
USP1-201ENST00000339950 HOMER2Q9NSB8 354 aa13.25□□□□□ -0.29
USP1-201ENST00000339950 CFBP00751 764 aa13.25□□□□□ -0.29
USP1-201ENST00000339950 SLC1A4P43007 532 aa13.25□□□□□ -0.29
USP1-201ENST00000339950 ATP2C1P98194 919 aaPredicted RBP13.25□□□□□ -0.29
USP1-201ENST00000339950 ARHGAP44Q17R89 818 aa13.25□□□□□ -0.29
USP1-201ENST00000339950 TTC31Q49AM3 519 aaPredicted RBP13.25□□□□□ -0.29
USP1-201ENST00000339950 MAP9Q49MG5 647 aa13.25□□□□□ -0.29
USP1-201ENST00000339950 RIC1Q4ADV7 1423 aa13.25□□□□□ -0.29
USP1-201ENST00000339950 VEZTQ9HBM0 779 aa13.25□□□□□ -0.29
USP1-201ENST00000339950 ATP8A2Q9NTI2 1148 aa13.25□□□□□ -0.29
USP1-201ENST00000339950 CNTNAP5Q8WYK1 1306 aa13.25□□□□□ -0.29
USP1-201ENST00000339950 CEP104O60308 925 aa13.25□□□□□ -0.29
USP1-201ENST00000339950 GJC1P36383 396 aa13.25□□□□□ -0.29
USP1-201ENST00000339950 ADCY7P51828 1080 aa13.25□□□□□ -0.29
USP1-201ENST00000339950 WDR66Q8TBY9 1149 aa13.25□□□□□ -0.29
USP1-201ENST00000339950 NYXQ9GZU5 481 aa13.25□□□□□ -0.29
USP1-201ENST00000339950 NFAT5O94916 1531 aa13.25□□□□□ -0.29
USP1-201ENST00000339950 ARHGAP23Q9P227 1491 aa13.24□□□□□ -0.29
USP1-201ENST00000339950 OVOS2A0A0G2JMS6 1433 aa13.24□□□□□ -0.29
USP1-201ENST00000339950 DDAH1O94760 285 aa13.24□□□□□ -0.29
USP1-201ENST00000339950 SHISA4Q96DD7 197 aa13.24□□□□□ -0.29
USP1-201ENST00000339950 PCDHA12Q9UN75 941 aa13.24□□□□□ -0.29
USP1-201ENST00000339950 CTDP1Q9Y5B0 961 aaPredicted RBP13.24□□□□□ -0.29
USP1-201ENST00000339950 RNF40O75150 1001 aa13.24□□□□□ -0.29
USP1-201ENST00000339950 IL17AQ16552 155 aa13.24□□□□□ -0.29
USP1-201ENST00000339950 C8orf74Q6P047 294 aa13.24□□□□□ -0.29
USP1-201ENST00000339950 CCDC174Q6PII3 467 aa13.24□□□□□ -0.29
USP1-201ENST00000339950 GPBP1Q86WP2 473 aa13.24□□□□□ -0.29
USP1-201ENST00000339950 FAM114A1Q8IWE2 563 aa13.24□□□□□ -0.29
USP1-201ENST00000339950 SYCP3Q8IZU3 236 aa13.24□□□□□ -0.29
USP1-201ENST00000339950 FAM133AQ8N9E0 248 aa13.24□□□□□ -0.29
USP1-201ENST00000339950 RWDD2AQ9UIY3 292 aa13.24□□□□□ -0.29
USP1-201ENST00000339950 BICDL2A1A5D9 508 aa13.24□□□□□ -0.29
USP1-201ENST00000339950 MDM2Q00987 491 aaPredicted RBP13.24□□□□□ -0.29
USP1-201ENST00000339950 FOXR1Q6PIV2 292 aa13.24□□□□□ -0.29
USP1-201ENST00000339950 PHLDB2Q86SQ0 1253 aa13.24□□□□□ -0.29
USP1-201ENST00000339950 TICAM2Q86XR7 235 aa13.24□□□□□ -0.29
USP1-201ENST00000339950 GIMAP7Q8NHV1 300 aa13.24□□□□□ -0.29
USP1-201ENST00000339950 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.24□□□□□ -0.29
USP1-201ENST00000339950 MST1RQ04912 1400 aa13.24□□□□□ -0.29
USP1-201ENST00000339950 GOLGA6BA6NDN3 693 aa13.23□□□□□ -0.29
USP1-201ENST00000339950 DNM2P50570 870 aa13.23□□□□□ -0.29
USP1-201ENST00000339950 GUCY2DQ02846 1103 aa13.23□□□□□ -0.29
USP1-201ENST00000339950 CPXCR1Q8N123 301 aa13.23□□□□□ -0.29
USP1-201ENST00000339950 PANX2Q96RD6 677 aa13.23□□□□□ -0.29
USP1-201ENST00000339950 PCDHA6Q9UN73 950 aa13.23□□□□□ -0.29
USP1-201ENST00000339950 PCDHA8Q9Y5H6 950 aa13.23□□□□□ -0.29
USP1-201ENST00000339950 STK36Q9NRP7 1315 aa13.23□□□□□ -0.29
USP1-201ENST00000339950 RGPD1P0DJD0 1748 aa13.23□□□□□ -0.29
USP1-201ENST00000339950 GOLGA6CA6NDK9 693 aa13.23□□□□□ -0.29
USP1-201ENST00000339950 GOLGA6DP0CG33 693 aa13.23□□□□□ -0.29
USP1-201ENST00000339950 LONP1P36776 959 aaKnown RBP13.23□□□□□ -0.29
USP1-201ENST00000339950 LIG3P49916 1009 aa13.23□□□□□ -0.29
USP1-201ENST00000339950 GSTO1P78417 241 aa13.23□□□□□ -0.29
USP1-201ENST00000339950 KIAA0753Q2KHM9 967 aa13.23□□□□□ -0.29
USP1-201ENST00000339950 AFAP1L1Q8TED9 768 aa13.23□□□□□ -0.29
USP1-201ENST00000339950 TBC1D5Q92609 795 aa13.23□□□□□ -0.29
USP1-201ENST00000339950 GOLGA6AQ9NYA3 693 aa13.23□□□□□ -0.29
USP1-201ENST00000339950 CHORDC1Q9UHD1 332 aaPredicted RBP13.23□□□□□ -0.29
USP1-201ENST00000339950 SLIT1O75093 1534 aa13.23□□□□□ -0.29
USP1-201ENST00000339950 NKRFO15226 690 aaKnown RBP eCLIP13.23□□□□□ -0.29
USP1-201ENST00000339950 ZNF18P17022 549 aa13.23□□□□□ -0.29
USP1-201ENST00000339950 CCT5P48643 541 aa13.23□□□□□ -0.29
USP1-201ENST00000339950 KLHL30Q0D2K2 578 aa13.23□□□□□ -0.29
USP1-201ENST00000339950 CNNM4Q6P4Q7 775 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms