RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 GCOM1H8Y6P7 765 aaPredicted RBP25.47■■□□□ 1.67
SDC3-202ENST00000339394 POLR2MP0CAP2 368 aa25.47■■□□□ 1.67
SDC3-202ENST00000339394 ADORA2AP29274 412 aa25.47■■□□□ 1.67
SDC3-202ENST00000339394 GNA11P29992 359 aa25.47■■□□□ 1.67
SDC3-202ENST00000339394 HOXA13P31271 388 aaPredicted RBP25.47■■□□□ 1.67
SDC3-202ENST00000339394 HSD17B4P51659 736 aa25.47■■□□□ 1.67
SDC3-202ENST00000339394 ADCY7P51828 1080 aa25.47■■□□□ 1.67
SDC3-202ENST00000339394 TRIM29Q14134 588 aa25.47■■□□□ 1.67
SDC3-202ENST00000339394 MORN1Q5T089 497 aa25.47■■□□□ 1.67
SDC3-202ENST00000339394 SLC30A10Q6XR72 485 aa25.47■■□□□ 1.67
SDC3-202ENST00000339394 MAF1Q9H063 256 aa25.47■■□□□ 1.67
SDC3-202ENST00000339394 GJD2Q9UKL4 321 aa25.47■■□□□ 1.67
SDC3-202ENST00000339394 PFASO15067 1338 aa25.46■■□□□ 1.67
SDC3-202ENST00000339394 SLC15A5A6NIM6 579 aa25.46■■□□□ 1.67
SDC3-202ENST00000339394 PIK3CDO00329 1044 aa25.46■■□□□ 1.67
SDC3-202ENST00000339394 PGK2P07205 417 aa25.46■■□□□ 1.67
SDC3-202ENST00000339394 CALML3P27482 149 aa25.46■■□□□ 1.67
SDC3-202ENST00000339394 NPY5RQ15761 445 aa25.46■■□□□ 1.67
SDC3-202ENST00000339394 KRT40Q6A162 431 aa25.46■■□□□ 1.67
SDC3-202ENST00000339394 SAMD3Q8N6K7 520 aa25.46■■□□□ 1.67
SDC3-202ENST00000339394 FBXO18Q8NFZ0 1043 aa25.46■■□□□ 1.67
SDC3-202ENST00000339394 GLT8D2Q9H1C3 349 aa25.46■■□□□ 1.67
SDC3-202ENST00000339394 MAP3K20Q9NYL2 800 aaKnown RBP25.46■■□□□ 1.67
SDC3-202ENST00000339394 ADAMTS3O15072 1205 aa25.45■■□□□ 1.66
SDC3-202ENST00000339394 CTCFP49711 727 aaPredicted RBP25.45■■□□□ 1.66
SDC3-202ENST00000339394 GUCY1B3Q02153 619 aa25.45■■□□□ 1.66
SDC3-202ENST00000339394 LARP1BQ659C4 914 aaKnown RBP25.45■■□□□ 1.66
SDC3-202ENST00000339394 DNAJC25-GNG10A0A024R161 153 aa25.44■■□□□ 1.66
SDC3-202ENST00000339394 UBE2SQ16763 222 aa25.44■■□□□ 1.66
SDC3-202ENST00000339394 SYTL5Q8TDW5 730 aaPredicted RBP25.44■■□□□ 1.66
SDC3-202ENST00000339394 PURBQ96QR8 312 aaKnown RBP25.44■■□□□ 1.66
SDC3-202ENST00000339394 NUDT12Q9BQG2 462 aa25.44■■□□□ 1.66
SDC3-202ENST00000339394 COL20A1Q9P218 1284 aa25.44■■□□□ 1.66
SDC3-202ENST00000339394 PCDHA4Q9UN74 947 aa25.44■■□□□ 1.66
SDC3-202ENST00000339394 POTEB2H3BUK9 544 aa25.44■■□□□ 1.66
SDC3-202ENST00000339394 COBLO75128 1261 aa25.44■■□□□ 1.66
SDC3-202ENST00000339394 MMP1P03956 469 aa25.44■■□□□ 1.66
SDC3-202ENST00000339394 LBX1P52954 281 aa25.44■■□□□ 1.66
SDC3-202ENST00000339394 CNTN2Q02246 1040 aa25.44■■□□□ 1.66
SDC3-202ENST00000339394 ARHGEF6Q15052 776 aa25.44■■□□□ 1.66
SDC3-202ENST00000339394 GALNT17Q6IS24 598 aa25.44■■□□□ 1.66
SDC3-202ENST00000339394 DPP9Q86TI2 863 aa25.44■■□□□ 1.66
SDC3-202ENST00000339394 TEX2Q8IWB9 1127 aa25.44■■□□□ 1.66
SDC3-202ENST00000339394 BICD2Q8TD16 824 aa25.44■■□□□ 1.66
SDC3-202ENST00000339394 SOCS4Q8WXH5 440 aa25.44■■□□□ 1.66
SDC3-202ENST00000339394 USP6NLQ92738 828 aa25.44■■□□□ 1.66
SDC3-202ENST00000339394 MYH6P13533 1939 aa25.43■■□□□ 1.66
SDC3-202ENST00000339394 GNRH1P01148 92 aa25.43■■□□□ 1.66
SDC3-202ENST00000339394 FAM133AQ8N9E0 248 aa25.43■■□□□ 1.66
SDC3-202ENST00000339394 BIN2Q9UBW5 565 aaPredicted RBP25.43■■□□□ 1.66
SDC3-202ENST00000339394 GABRQQ9UN88 632 aa25.43■■□□□ 1.66
SDC3-202ENST00000339394 PDCP20941 246 aa25.42■■□□□ 1.66
SDC3-202ENST00000339394 CLK2P49760 499 aaKnown RBP25.42■■□□□ 1.66
SDC3-202ENST00000339394 PRKCZQ05513 592 aa25.42■■□□□ 1.66
SDC3-202ENST00000339394 MAP2K5Q13163 448 aa25.42■■□□□ 1.66
SDC3-202ENST00000339394 FCHSD1Q86WN1 690 aa25.42■■□□□ 1.66
SDC3-202ENST00000339394 BLIDQ8IZY5 108 aa25.42■■□□□ 1.66
SDC3-202ENST00000339394 DAGLBQ8NCG7 672 aa25.42■■□□□ 1.66
SDC3-202ENST00000339394 HOXD10P28358 340 aa25.41■■□□□ 1.66
SDC3-202ENST00000339394 FLT3LGP49771 235 aa25.41■■□□□ 1.66
SDC3-202ENST00000339394 REXO1Q8N1G1 1221 aaKnown RBP25.41■■□□□ 1.66
SDC3-202ENST00000339394 OXER1Q8TDS5 423 aa25.41■■□□□ 1.66
SDC3-202ENST00000339394 SRRDQ9UH36 339 aa25.41■■□□□ 1.66
SDC3-202ENST00000339394 H3BQV1 296 aa25.4■■□□□ 1.66
SDC3-202ENST00000339394 M0R2N6 131 aa25.4■■□□□ 1.66
SDC3-202ENST00000339394 SYT1P21579 422 aa25.4■■□□□ 1.66
SDC3-202ENST00000339394 RGS2P41220 211 aa25.4■■□□□ 1.66
SDC3-202ENST00000339394 ZNF792Q3KQV3 632 aa25.4■■□□□ 1.66
SDC3-202ENST00000339394 IFFO2Q5TF58 517 aa25.4■■□□□ 1.66
SDC3-202ENST00000339394 JAKMIP3Q5VZ66 844 aa25.4■■□□□ 1.66
SDC3-202ENST00000339394 RASGRP4Q8TDF6 673 aa25.4■■□□□ 1.66
SDC3-202ENST00000339394 TAAR1Q96RJ0 339 aa25.4■■□□□ 1.66
SDC3-202ENST00000339394 TMEM260Q9NX78 707 aa25.4■■□□□ 1.66
SDC3-202ENST00000339394 DAXXQ9UER7 740 aaPredicted RBP25.4■■□□□ 1.66
SDC3-202ENST00000339394 HOXC6P09630 235 aa25.39■■□□□ 1.66
SDC3-202ENST00000339394 CYP2B6P20813 491 aa25.39■■□□□ 1.66
SDC3-202ENST00000339394 OTOP1Q7RTM1 612 aa25.39■■□□□ 1.66
SDC3-202ENST00000339394 DIS3L2Q8IYB7 885 aaKnown RBP25.39■■□□□ 1.66
SDC3-202ENST00000339394 NPLOC4Q8TAT6 608 aa25.39■■□□□ 1.66
SDC3-202ENST00000339394 BRMS1Q9HCU9 246 aa25.39■■□□□ 1.66
SDC3-202ENST00000339394 SLC5A4Q9NY91 659 aa25.39■■□□□ 1.66
SDC3-202ENST00000339394 PCDHA6Q9UN73 950 aa25.39■■□□□ 1.66
SDC3-202ENST00000339394 TRIM17Q9Y577 477 aa25.39■■□□□ 1.66
SDC3-202ENST00000339394 PCDHA8Q9Y5H6 950 aa25.39■■□□□ 1.66
SDC3-202ENST00000339394 ASTN1O14525 1302 aa25.39■■□□□ 1.65
SDC3-202ENST00000339394 SOWAHBA6NEL2 793 aa25.39■■□□□ 1.65
SDC3-202ENST00000339394 SPDYE3A6NKU9 549 aa25.39■■□□□ 1.65
SDC3-202ENST00000339394 BTBD18B2RXH4 712 aa25.39■■□□□ 1.65
SDC3-202ENST00000339394 KRT2P35908 639 aa25.39■■□□□ 1.65
SDC3-202ENST00000339394 SAFBQ15424 915 aaKnown RBP eCLIP25.39■■□□□ 1.65
SDC3-202ENST00000339394 FGD4Q96M96 766 aa25.39■■□□□ 1.65
SDC3-202ENST00000339394 RMDN3Q96TC7 470 aa25.39■■□□□ 1.65
SDC3-202ENST00000339394 DIS3Q9Y2L1 958 aaKnown RBP25.39■■□□□ 1.65
SDC3-202ENST00000339394 NR5A1Q13285 461 aa25.38■■□□□ 1.65
SDC3-202ENST00000339394 DNERQ8NFT8 737 aa25.38■■□□□ 1.65
SDC3-202ENST00000339394 PGBD1Q96JS3 809 aa25.38■■□□□ 1.65
SDC3-202ENST00000339394 HTTP42858 3142 aa25.38■■□□□ 1.65
SDC3-202ENST00000339394 ZSWIM8A7E2V4 1837 aa25.37■■□□□ 1.65
SDC3-202ENST00000339394 FOSP01100 380 aaPredicted RBP25.37■■□□□ 1.65
SDC3-202ENST00000339394 XRCC5P13010 732 aaKnown RBP25.37■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms