RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 ALAS1P13196 640 aa18.94■□□□□ 0.62
PDLIM1-201ENST00000329399 IFNAR1P17181 557 aa18.94■□□□□ 0.62
PDLIM1-201ENST00000329399 ADGRF4Q8IZF3 695 aa18.94■□□□□ 0.62
PDLIM1-201ENST00000329399 ZNF654Q8IZM8 581 aa18.94■□□□□ 0.62
PDLIM1-201ENST00000329399 TRERF1Q96PN7 1200 aa18.94■□□□□ 0.62
PDLIM1-201ENST00000329399 PURBQ96QR8 312 aaKnown RBP18.94■□□□□ 0.62
PDLIM1-201ENST00000329399 TRAK2O60296 914 aa18.93■□□□□ 0.62
PDLIM1-201ENST00000329399 JAK2O60674 1132 aa18.93■□□□□ 0.62
PDLIM1-201ENST00000329399 SGPL1O95470 568 aa18.93■□□□□ 0.62
PDLIM1-201ENST00000329399 FDX1P10109 184 aa18.93■□□□□ 0.62
PDLIM1-201ENST00000329399 CNTN2Q02246 1040 aa18.93■□□□□ 0.62
PDLIM1-201ENST00000329399 TROAPQ12815 778 aa18.93■□□□□ 0.62
PDLIM1-201ENST00000329399 KCTD2Q14681 263 aa18.93■□□□□ 0.62
PDLIM1-201ENST00000329399 MCTP1Q6DN14 999 aa18.93■□□□□ 0.62
PDLIM1-201ENST00000329399 TRIM22Q8IYM9 498 aa18.93■□□□□ 0.62
PDLIM1-201ENST00000329399 FANCBQ8NB91 859 aa18.93■□□□□ 0.62
PDLIM1-201ENST00000329399 TMEM87AQ8NBN3 555 aa18.93■□□□□ 0.62
PDLIM1-201ENST00000329399 MYL10Q9BUA6 226 aa18.93■□□□□ 0.62
PDLIM1-201ENST00000329399 VAT1LQ9HCJ6 419 aa18.93■□□□□ 0.62
PDLIM1-201ENST00000329399 RNF146Q9NTX7 359 aa18.93■□□□□ 0.62
PDLIM1-201ENST00000329399 CEP290O15078 2479 aa18.93■□□□□ 0.62
PDLIM1-201ENST00000329399 PALM3A6NDB9 673 aaPredicted RBP18.92■□□□□ 0.62
PDLIM1-201ENST00000329399 ICAM1P05362 532 aa18.92■□□□□ 0.62
PDLIM1-201ENST00000329399 NCLP19338 710 aaKnown RBP18.92■□□□□ 0.62
PDLIM1-201ENST00000329399 MLLT1Q03111 559 aaPredicted RBP18.92■□□□□ 0.62
PDLIM1-201ENST00000329399 RTN1Q16799 776 aa18.92■□□□□ 0.62
PDLIM1-201ENST00000329399 GPATCH4Q5T3I0 446 aaKnown RBP18.92■□□□□ 0.62
PDLIM1-201ENST00000329399 OLFML2BQ68BL8 750 aa18.92■□□□□ 0.62
PDLIM1-201ENST00000329399 LHX8Q68G74 356 aa18.92■□□□□ 0.62
PDLIM1-201ENST00000329399 TRMT44Q8IYL2 757 aaKnown RBP18.92■□□□□ 0.62
PDLIM1-201ENST00000329399 CHST13Q8NET6 341 aa18.92■□□□□ 0.62
PDLIM1-201ENST00000329399 JMJD4Q9H9V9 463 aa18.92■□□□□ 0.62
PDLIM1-201ENST00000329399 NCOA5Q9HCD5 579 aaKnown RBP18.92■□□□□ 0.62
PDLIM1-201ENST00000329399 HMX1Q9NP08 348 aaPredicted RBP18.92■□□□□ 0.62
PDLIM1-201ENST00000329399 A1CFQ9NQ94 594 aaKnown RBP18.92■□□□□ 0.62
PDLIM1-201ENST00000329399 ORC3Q9UBD5 711 aaPredicted RBP18.92■□□□□ 0.62
PDLIM1-201ENST00000329399 CCPG1Q9ULG6 757 aa18.92■□□□□ 0.62
PDLIM1-201ENST00000329399 ASTN1O14525 1302 aa18.91■□□□□ 0.62
PDLIM1-201ENST00000329399 ZNF236Q9UL36 1845 aa18.91■□□□□ 0.62
PDLIM1-201ENST00000329399 MBD3O95983 291 aa18.91■□□□□ 0.62
PDLIM1-201ENST00000329399 PARP1P09874 1014 aaKnown RBP18.91■□□□□ 0.62
PDLIM1-201ENST00000329399 MNX1P50219 401 aaPredicted RBP18.91■□□□□ 0.62
PDLIM1-201ENST00000329399 SSRP1Q08945 709 aaKnown RBP18.91■□□□□ 0.62
PDLIM1-201ENST00000329399 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.91■□□□□ 0.62
PDLIM1-201ENST00000329399 MICU3Q86XE3 530 aa18.91■□□□□ 0.62
PDLIM1-201ENST00000329399 RAB11FIP4Q86YS3 637 aa18.91■□□□□ 0.62
PDLIM1-201ENST00000329399 CLEC4DQ8WXI8 215 aa18.91■□□□□ 0.62
PDLIM1-201ENST00000329399 DDX11Q96FC9 970 aa18.91■□□□□ 0.62
PDLIM1-201ENST00000329399 CRISPLD2Q9H0B8 497 aa18.91■□□□□ 0.62
PDLIM1-201ENST00000329399 RBM27Q9P2N5 1060 aaKnown RBP18.91■□□□□ 0.62
PDLIM1-201ENST00000329399 RBBP6Q7Z6E9 1792 aaKnown RBP18.91■□□□□ 0.62
PDLIM1-201ENST00000329399 KLRF2D3W0D1 207 aa18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 NFIBO00712 420 aa18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 KIF5BP33176 963 aa18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 COPB2P35606 906 aa18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 NTRK3Q16288 839 aa18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 KLHL40Q2TBA0 621 aa18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 ASPRV1Q53RT3 343 aa18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 MFSD14CQ5VZR4 134 aa18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 UBE2Q1Q7Z7E8 422 aa18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 ANKRD35Q8N283 1001 aa18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 SOWAHBA6NEL2 793 aa18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 CYTH3O43739 400 aa18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 TFRCP02786 760 aaKnown RBP18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 CYBAP13498 195 aa18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 RXRAP19793 462 aa18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 GNAQP50148 359 aa18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 KRT85P78386 507 aa18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 GRM4Q14833 912 aa18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 ANO1Q5XXA6 986 aa18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 DIS3LQ8TF46 1054 aaKnown RBP18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 TBC1D5Q92609 795 aa18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 C8orf76Q96K31 380 aa18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 TINF2Q9BSI4 451 aa18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 SCAND2PQ9GZW5 306 aaPredicted RBP18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 ACAD9Q9H845 621 aa18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 LMBRD1Q9NUN5 540 aa18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 CFAP45Q9UL16 551 aa18.9■□□□□ 0.62
PDLIM1-201ENST00000329399 RANBP2P49792 3224 aaKnown RBP18.89■□□□□ 0.61
PDLIM1-201ENST00000329399 PPP1R11O60927 126 aaPredicted RBP18.89■□□□□ 0.61
PDLIM1-201ENST00000329399 SNAI1O95863 264 aaPredicted RBP18.89■□□□□ 0.61
PDLIM1-201ENST00000329399 FDPSP14324 419 aaKnown RBP18.89■□□□□ 0.61
PDLIM1-201ENST00000329399 ADD1P35611 737 aaKnown RBP18.89■□□□□ 0.61
PDLIM1-201ENST00000329399 CDC37Q16543 378 aaPredicted RBP18.89■□□□□ 0.61
PDLIM1-201ENST00000329399 QRICH1Q2TAL8 776 aa18.89■□□□□ 0.61
PDLIM1-201ENST00000329399 USH1GQ495M9 461 aa18.89■□□□□ 0.61
PDLIM1-201ENST00000329399 FAM177A1Q8N128 213 aaPredicted RBP18.89■□□□□ 0.61
PDLIM1-201ENST00000329399 FAM133AQ8N9E0 248 aa18.89■□□□□ 0.61
PDLIM1-201ENST00000329399 FBXO18Q8NFZ0 1043 aa18.89■□□□□ 0.61
PDLIM1-201ENST00000329399 CTCFLQ8NI51 663 aaPredicted RBP18.89■□□□□ 0.61
PDLIM1-201ENST00000329399 RNF26Q9BY78 433 aaPredicted RBP18.89■□□□□ 0.61
PDLIM1-201ENST00000329399 FAM217BQ9NTX9 383 aaPredicted RBP18.89■□□□□ 0.61
PDLIM1-201ENST00000329399 CYP39A1Q9NYL5 469 aa18.89■□□□□ 0.61
PDLIM1-201ENST00000329399 FBXO40Q9UH90 709 aa18.89■□□□□ 0.61
PDLIM1-201ENST00000329399 DIS3Q9Y2L1 958 aaKnown RBP18.89■□□□□ 0.61
PDLIM1-201ENST00000329399 DEXIO95424 95 aa18.88■□□□□ 0.61
PDLIM1-201ENST00000329399 XBP1P17861 261 aa18.88■□□□□ 0.61
PDLIM1-201ENST00000329399 TRIM29Q14134 588 aa18.88■□□□□ 0.61
PDLIM1-201ENST00000329399 TKFCQ3LXA3 575 aa18.88■□□□□ 0.61
PDLIM1-201ENST00000329399 BRAPQ7Z569 592 aa18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms