RNA–Protein interactions for RNA: ENST00000326956.11

SSBP3-201, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 2

Gene SSBP3, Length 2,913 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-201ENST00000326956 EIF4A3P38919 411 aaKnown RBP16.23■□□□□ 0.19
SSBP3-201ENST00000326956 MAGEA1P43355 309 aa16.23■□□□□ 0.19
SSBP3-201ENST00000326956 ITIH3Q06033 890 aa16.23■□□□□ 0.19
SSBP3-201ENST00000326956 STK4Q13043 487 aa16.23■□□□□ 0.19
SSBP3-201ENST00000326956 EMBQ6PCB8 327 aa16.23■□□□□ 0.19
SSBP3-201ENST00000326956 HDAC7Q8WUI4 952 aa16.23■□□□□ 0.19
SSBP3-201ENST00000326956 RRP36Q96EU6 259 aaKnown RBP16.23■□□□□ 0.19
SSBP3-201ENST00000326956 TRIM9Q9C026 710 aa16.23■□□□□ 0.19
SSBP3-201ENST00000326956 ATP8A2Q9NTI2 1148 aa16.23■□□□□ 0.19
SSBP3-201ENST00000326956 STIM2Q9P246 746 aa16.23■□□□□ 0.19
SSBP3-201ENST00000326956 FAM169AQ9Y6X4 670 aa16.23■□□□□ 0.19
SSBP3-201ENST00000326956 RASSF10A6NK89 507 aa16.23■□□□□ 0.19
SSBP3-201ENST00000326956 CYP2D6P10635 497 aa16.23■□□□□ 0.19
SSBP3-201ENST00000326956 PLCH1Q4KWH8 1693 aa16.23■□□□□ 0.19
SSBP3-201ENST00000326956 ALS2CLQ60I27 953 aa16.23■□□□□ 0.19
SSBP3-201ENST00000326956 NFRKBQ6P4R8 1299 aa16.23■□□□□ 0.19
SSBP3-201ENST00000326956 AK8Q96MA6 479 aa16.23■□□□□ 0.19
SSBP3-201ENST00000326956 MCM9Q9NXL9 1143 aa16.23■□□□□ 0.19
SSBP3-201ENST00000326956 PCDHA6Q9UN73 950 aa16.23■□□□□ 0.19
SSBP3-201ENST00000326956 PLAGL2Q9UPG8 496 aa16.23■□□□□ 0.19
SSBP3-201ENST00000326956 TOGARAM1Q9Y4F4 1720 aa16.23■□□□□ 0.19
SSBP3-201ENST00000326956 PCDHA8Q9Y5H6 950 aa16.23■□□□□ 0.19
SSBP3-201ENST00000326956 A6NNZ2 444 aa16.22■□□□□ 0.19
SSBP3-201ENST00000326956 FGFR1OPO95684 399 aaKnown RBP16.22■□□□□ 0.19
SSBP3-201ENST00000326956 FCER1AP12319 257 aa16.22■□□□□ 0.19
SSBP3-201ENST00000326956 PRLRP16471 622 aa16.22■□□□□ 0.19
SSBP3-201ENST00000326956 TFAP4Q01664 338 aa16.22■□□□□ 0.19
SSBP3-201ENST00000326956 EVX2Q03828 476 aa16.22■□□□□ 0.19
SSBP3-201ENST00000326956 TUBB8Q3ZCM7 444 aa16.22■□□□□ 0.19
SSBP3-201ENST00000326956 TTC19Q6DKK2 380 aaPredicted RBP16.22■□□□□ 0.19
SSBP3-201ENST00000326956 GALNT17Q6IS24 598 aa16.22■□□□□ 0.19
SSBP3-201ENST00000326956 CACNA2D4Q7Z3S7 1137 aa16.22■□□□□ 0.19
SSBP3-201ENST00000326956 CALML4Q96GE6 196 aa16.22■□□□□ 0.19
SSBP3-201ENST00000326956 CCDC87Q9NVE4 849 aa16.22■□□□□ 0.19
SSBP3-201ENST00000326956 EXOC5O00471 708 aa16.22■□□□□ 0.19
SSBP3-201ENST00000326956 ZNF263O14978 683 aa16.22■□□□□ 0.19
SSBP3-201ENST00000326956 EIF3HO15372 352 aaKnown RBP eCLIP16.22■□□□□ 0.19
SSBP3-201ENST00000326956 LETM2Q2VYF4 491 aa16.22■□□□□ 0.19
SSBP3-201ENST00000326956 RRAGAQ7L523 313 aa16.22■□□□□ 0.19
SSBP3-201ENST00000326956 CCDC84Q86UT8 332 aaPredicted RBP16.22■□□□□ 0.19
SSBP3-201ENST00000326956 GPIHBP1Q8IV16 184 aa16.22■□□□□ 0.19
SSBP3-201ENST00000326956 STAG2Q8N3U4 1231 aa16.22■□□□□ 0.19
SSBP3-201ENST00000326956 BCL9O00512 1426 aa16.22■□□□□ 0.19
SSBP3-201ENST00000326956 KIAA0754O94854 1291 aa16.22■□□□□ 0.19
SSBP3-201ENST00000326956 OR52Z1P0C646 297 aa16.22■□□□□ 0.19
SSBP3-201ENST00000326956 PRPHP41219 470 aa16.22■□□□□ 0.19
SSBP3-201ENST00000326956 MECOMQ03112 1051 aa16.22■□□□□ 0.19
SSBP3-201ENST00000326956 TXNRD1Q16881 649 aa16.22■□□□□ 0.19
SSBP3-201ENST00000326956 TDRD12Q587J7 1177 aaKnown RBP16.22■□□□□ 0.19
SSBP3-201ENST00000326956 MKNK2Q9HBH9 465 aa16.22■□□□□ 0.19
SSBP3-201ENST00000326956 CCNT1O60563 726 aaKnown RBP16.21■□□□□ 0.19
SSBP3-201ENST00000326956 INPP5BP32019 993 aa16.21■□□□□ 0.19
SSBP3-201ENST00000326956 VWA3BQ502W6 1294 aa16.21■□□□□ 0.19
SSBP3-201ENST00000326956 MIIPQ5JXC2 388 aa16.21■□□□□ 0.19
SSBP3-201ENST00000326956 CERS3Q8IU89 383 aa16.21■□□□□ 0.19
SSBP3-201ENST00000326956 ANKRD13CQ8N6S4 541 aa16.21■□□□□ 0.19
SSBP3-201ENST00000326956 TANGO6Q9C0B7 1094 aa16.21■□□□□ 0.19
SSBP3-201ENST00000326956 NDST4Q9H3R1 872 aa16.21■□□□□ 0.19
SSBP3-201ENST00000326956 SLC39A2Q9NP94 309 aa16.21■□□□□ 0.19
SSBP3-201ENST00000326956 ARHGAP20Q9P2F6 1191 aa16.21■□□□□ 0.19
SSBP3-201ENST00000326956 NDUFAB1O14561 156 aa16.21■□□□□ 0.18
SSBP3-201ENST00000326956 MMS22LQ6ZRQ5 1243 aa16.21■□□□□ 0.18
SSBP3-201ENST00000326956 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.21■□□□□ 0.18
SSBP3-201ENST00000326956 ZSCAN29Q8IWY8 852 aaPredicted RBP16.21■□□□□ 0.18
SSBP3-201ENST00000326956 NSUN4Q96CB9 384 aaKnown RBP16.21■□□□□ 0.18
SSBP3-201ENST00000326956 NOX5Q96PH1 765 aa16.21■□□□□ 0.18
SSBP3-201ENST00000326956 CPP00450 1065 aa16.2■□□□□ 0.18
SSBP3-201ENST00000326956 IRX3P78415 501 aaPredicted RBP16.2■□□□□ 0.18
SSBP3-201ENST00000326956 CFAP221Q4G0U5 840 aa16.2■□□□□ 0.18
SSBP3-201ENST00000326956 CFAP58Q5T655 872 aa16.2■□□□□ 0.18
SSBP3-201ENST00000326956 POTEDQ86YR6 584 aa16.2■□□□□ 0.18
SSBP3-201ENST00000326956 IFT20Q8IY31 132 aa16.2■□□□□ 0.18
SSBP3-201ENST00000326956 CDK5RAP3Q96JB5 506 aa16.2■□□□□ 0.18
SSBP3-201ENST00000326956 FAM84BQ96KN1 310 aaPredicted RBP16.2■□□□□ 0.18
SSBP3-201ENST00000326956 C7orf25Q9BPX7 421 aa16.2■□□□□ 0.18
SSBP3-201ENST00000326956 EHD4Q9H223 541 aa16.2■□□□□ 0.18
SSBP3-201ENST00000326956 BTG4Q9NY30 223 aa16.2■□□□□ 0.18
SSBP3-201ENST00000326956 SMARCAL1Q9NZC9 954 aa16.2■□□□□ 0.18
SSBP3-201ENST00000326956 SHANK3Q9BYB0 1731 aa16.2■□□□□ 0.18
SSBP3-201ENST00000326956 WTIPA6NIX2 430 aaPredicted RBP16.2■□□□□ 0.18
SSBP3-201ENST00000326956 NTSR2O95665 410 aa16.2■□□□□ 0.18
SSBP3-201ENST00000326956 NAPAP54920 295 aa16.2■□□□□ 0.18
SSBP3-201ENST00000326956 RCSD1Q6JBY9 416 aa16.2■□□□□ 0.18
SSBP3-201ENST00000326956 SV2BQ7L1I2 683 aa16.2■□□□□ 0.18
SSBP3-201ENST00000326956 DGKHQ86XP1 1220 aa16.2■□□□□ 0.18
SSBP3-201ENST00000326956 LUC7LQ9NQ29 371 aaKnown RBP16.2■□□□□ 0.18
SSBP3-201ENST00000326956 MYH10P35580 1976 aa16.19■□□□□ 0.18
SSBP3-201ENST00000326956 ADAMTS2O95450 1211 aa16.19■□□□□ 0.18
SSBP3-201ENST00000326956 ATP6V1AP38606 617 aa16.19■□□□□ 0.18
SSBP3-201ENST00000326956 TECP42680 631 aa16.19■□□□□ 0.18
SSBP3-201ENST00000326956 MAN2A1Q16706 1144 aa16.19■□□□□ 0.18
SSBP3-201ENST00000326956 B4GALNT4Q76KP1 1039 aa16.19■□□□□ 0.18
SSBP3-201ENST00000326956 SAMM50Q9Y512 469 aa16.19■□□□□ 0.18
SSBP3-201ENST00000326956 H0YHG0 523 aa16.19■□□□□ 0.18
SSBP3-201ENST00000326956 NCK2O43639 380 aa16.19■□□□□ 0.18
SSBP3-201ENST00000326956 HNRNPH3P31942 346 aaKnown RBP16.19■□□□□ 0.18
SSBP3-201ENST00000326956 USP8P40818 1118 aa16.19■□□□□ 0.18
SSBP3-201ENST00000326956 DNA2P51530 1060 aa16.19■□□□□ 0.18
SSBP3-201ENST00000326956 NONOQ15233 471 aaKnown RBP eCLIP16.19■□□□□ 0.181e-6■■■□□ 18.7
SSBP3-201ENST00000326956 KRT25Q7Z3Z0 450 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms