RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 SLC39A5Q6ZMH5 540 aa18.68■□□□□ 0.58
HDDC2-201ENST00000318787 RAB11FIP4Q86YS3 637 aa18.68■□□□□ 0.58
HDDC2-201ENST00000318787 ZNF654Q8IZM8 581 aa18.68■□□□□ 0.58
HDDC2-201ENST00000318787 IGDCC4Q8TDY8 1250 aa18.68■□□□□ 0.58
HDDC2-201ENST00000318787 VTI1AQ96AJ9 217 aa18.68■□□□□ 0.58
HDDC2-201ENST00000318787 MPHOSPH6Q99547 160 aaKnown RBP18.68■□□□□ 0.58
HDDC2-201ENST00000318787 KATNBL1Q9H079 304 aa18.68■□□□□ 0.58
HDDC2-201ENST00000318787 LY9Q9HBG7 655 aa18.68■□□□□ 0.58
HDDC2-201ENST00000318787 PDGFCQ9NRA1 345 aa18.68■□□□□ 0.58
HDDC2-201ENST00000318787 RBM27Q9P2N5 1060 aaKnown RBP18.68■□□□□ 0.58
HDDC2-201ENST00000318787 PRKAG2Q9UGJ0 569 aa18.68■□□□□ 0.58
HDDC2-201ENST00000318787 MRPL11Q9Y3B7 192 aaKnown RBP18.68■□□□□ 0.58
HDDC2-201ENST00000318787 A0A1W2PQ45 241 aaPredicted RBP18.68■□□□□ 0.58
HDDC2-201ENST00000318787 A0A1W2PQY0 241 aa18.68■□□□□ 0.58
HDDC2-201ENST00000318787 CFBP00751 764 aa18.68■□□□□ 0.58
HDDC2-201ENST00000318787 RXRAP19793 462 aa18.68■□□□□ 0.58
HDDC2-201ENST00000318787 PTGS1P23219 599 aa18.68■□□□□ 0.58
HDDC2-201ENST00000318787 COL9A3Q14050 684 aaPredicted RBP18.68■□□□□ 0.58
HDDC2-201ENST00000318787 KCNA10Q16322 511 aa18.68■□□□□ 0.58
HDDC2-201ENST00000318787 TRIM60Q495X7 471 aa18.68■□□□□ 0.58
HDDC2-201ENST00000318787 CTCFLQ8NI51 663 aaPredicted RBP18.68■□□□□ 0.58
HDDC2-201ENST00000318787 TBC1D5Q92609 795 aa18.68■□□□□ 0.58
HDDC2-201ENST00000318787 PIGSQ96S52 555 aa18.68■□□□□ 0.58
HDDC2-201ENST00000318787 AMNQ9BXJ7 453 aa18.68■□□□□ 0.58
HDDC2-201ENST00000318787 PHF24Q9UPV7 400 aa18.68■□□□□ 0.58
HDDC2-201ENST00000318787 ACLYP53396 1101 aa18.67■□□□□ 0.58
HDDC2-201ENST00000318787 BEX3Q00994 111 aa18.67■□□□□ 0.58
HDDC2-201ENST00000318787 TROAPQ12815 778 aa18.67■□□□□ 0.58
HDDC2-201ENST00000318787 GNASQ5JWF2 1037 aa18.67■□□□□ 0.58
HDDC2-201ENST00000318787 TLK2Q86UE8 772 aa18.67■□□□□ 0.58
HDDC2-201ENST00000318787 MCF2L2Q86YR7 1114 aa18.67■□□□□ 0.58
HDDC2-201ENST00000318787 TMEM87BQ96K49 555 aa18.67■□□□□ 0.58
HDDC2-201ENST00000318787 TCEANC2Q96MN5 208 aa18.67■□□□□ 0.58
HDDC2-201ENST00000318787 AP5M1Q9H0R1 490 aa18.67■□□□□ 0.58
HDDC2-201ENST00000318787 STARD7Q9NQZ5 370 aa18.67■□□□□ 0.58
HDDC2-201ENST00000318787 PPP4R2Q9NY27 417 aa18.67■□□□□ 0.58
HDDC2-201ENST00000318787 DNAH12Q6ZR08 3092 aa18.66■□□□□ 0.58
HDDC2-201ENST00000318787 KIAA1217Q5T5P2 1943 aa18.66■□□□□ 0.58
HDDC2-201ENST00000318787 SH2B2O14492 632 aaPredicted RBP18.66■□□□□ 0.58
HDDC2-201ENST00000318787 ZBTB5O15062 677 aa18.66■□□□□ 0.58
HDDC2-201ENST00000318787 FXR1P51114 621 aaKnown RBP eCLIP18.66■□□□□ 0.58
HDDC2-201ENST00000318787 MDM2Q00987 491 aaPredicted RBP18.66■□□□□ 0.58
HDDC2-201ENST00000318787 NEK1Q96PY6 1258 aa18.66■□□□□ 0.58
HDDC2-201ENST00000318787 VTA1Q9NP79 307 aa18.66■□□□□ 0.58
HDDC2-201ENST00000318787 PCDHA1Q9Y5I3 950 aa18.66■□□□□ 0.58
HDDC2-201ENST00000318787 DYNC1LI2O43237 492 aaPredicted RBP18.65■□□□□ 0.58
HDDC2-201ENST00000318787 PQBP1O60828 265 aaKnown RBP18.65■□□□□ 0.58
HDDC2-201ENST00000318787 PPP1R11O60927 126 aaPredicted RBP18.65■□□□□ 0.58
HDDC2-201ENST00000318787 DDAH1O94760 285 aa18.65■□□□□ 0.58
HDDC2-201ENST00000318787 ASGR1P07306 291 aa18.65■□□□□ 0.58
HDDC2-201ENST00000318787 SMPD1P17405 629 aa18.65■□□□□ 0.58
HDDC2-201ENST00000318787 KIF5BP33176 963 aa18.65■□□□□ 0.58
HDDC2-201ENST00000318787 MAGEA10P43363 369 aaPredicted RBP18.65■□□□□ 0.58
HDDC2-201ENST00000318787 TMEM63BQ5T3F8 832 aa18.65■□□□□ 0.58
HDDC2-201ENST00000318787 PCSK9Q8NBP7 692 aaKnown RBP18.65■□□□□ 0.58
HDDC2-201ENST00000318787 NAP1L2Q9ULW6 460 aaPredicted RBP18.65■□□□□ 0.58
HDDC2-201ENST00000318787 LTBP2Q14767 1821 aa18.64■□□□□ 0.58
HDDC2-201ENST00000318787 MOXD2PA6NHM9 499 aa18.64■□□□□ 0.57
HDDC2-201ENST00000318787 B4DLN1 442 aa18.64■□□□□ 0.57
HDDC2-201ENST00000318787 MRPL12P52815 198 aaKnown RBP18.64■□□□□ 0.57
HDDC2-201ENST00000318787 GJA9P57773 515 aa18.64■□□□□ 0.57
HDDC2-201ENST00000318787 TAPT1Q6NXT6 567 aa18.64■□□□□ 0.57
HDDC2-201ENST00000318787 MICU3Q86XE3 530 aa18.64■□□□□ 0.57
HDDC2-201ENST00000318787 CMTR1Q8N1G2 835 aaKnown RBP18.64■□□□□ 0.57
HDDC2-201ENST00000318787 TMTC2Q8N394 836 aa18.64■□□□□ 0.57
HDDC2-201ENST00000318787 KLHDC9Q8NEP7 349 aa18.64■□□□□ 0.57
HDDC2-201ENST00000318787 DNERQ8NFT8 737 aa18.64■□□□□ 0.57
HDDC2-201ENST00000318787 SYTL5Q8TDW5 730 aaPredicted RBP18.64■□□□□ 0.57
HDDC2-201ENST00000318787 GLT1D1Q96MS3 346 aa18.64■□□□□ 0.57
HDDC2-201ENST00000318787 TAAR1Q96RJ0 339 aa18.64■□□□□ 0.57
HDDC2-201ENST00000318787 LBHD1Q9BQE6 289 aaPredicted RBP18.64■□□□□ 0.57
HDDC2-201ENST00000318787 TSEN34Q9BSV6 310 aaKnown RBP18.64■□□□□ 0.57
HDDC2-201ENST00000318787 WDR11Q9BZH6 1224 aa18.64■□□□□ 0.57
HDDC2-201ENST00000318787 SLC12A7Q9Y666 1083 aa18.64■□□□□ 0.57
HDDC2-201ENST00000318787 CYTH3O43739 400 aa18.63■□□□□ 0.57
HDDC2-201ENST00000318787 EIF2AK2P19525 551 aaKnown RBP18.63■□□□□ 0.57
HDDC2-201ENST00000318787 FGD1P98174 961 aa18.63■□□□□ 0.57
HDDC2-201ENST00000318787 SLC35G1Q2M3R5 365 aa18.63■□□□□ 0.57
HDDC2-201ENST00000318787 ADCK5Q3MIX3 580 aa18.63■□□□□ 0.57
HDDC2-201ENST00000318787 ARHGEF16Q5VV41 709 aa18.63■□□□□ 0.57
HDDC2-201ENST00000318787 IQSEC1Q6DN90 963 aa18.63■□□□□ 0.57
HDDC2-201ENST00000318787 SYNE3Q6ZMZ3 975 aa18.63■□□□□ 0.57
HDDC2-201ENST00000318787 RASEFQ8IZ41 740 aa18.63■□□□□ 0.57
HDDC2-201ENST00000318787 RMDN3Q96TC7 470 aa18.63■□□□□ 0.57
HDDC2-201ENST00000318787 UBE2OQ9C0C9 1292 aaKnown RBP18.63■□□□□ 0.57
HDDC2-201ENST00000318787 UPF3AQ9H1J1 476 aaKnown RBP18.63■□□□□ 0.57
HDDC2-201ENST00000318787 PRO3102Q9H379 93 aa18.63■□□□□ 0.57
HDDC2-201ENST00000318787 RIOX1Q9H6W3 641 aa18.63■□□□□ 0.57
HDDC2-201ENST00000318787 COL20A1Q9P218 1284 aa18.63■□□□□ 0.57
HDDC2-201ENST00000318787 MYH7BA7E2Y1 1941 aa18.62■□□□□ 0.57
HDDC2-201ENST00000318787 PLEKHA8P1O95397 391 aa18.62■□□□□ 0.57
HDDC2-201ENST00000318787 HOXA13P31271 388 aaPredicted RBP18.62■□□□□ 0.57
HDDC2-201ENST00000318787 TLE2Q04725 743 aa18.62■□□□□ 0.57
HDDC2-201ENST00000318787 FSCN1Q16658 493 aaKnown RBP18.62■□□□□ 0.57
HDDC2-201ENST00000318787 CCDC82Q8N4S0 544 aa18.62■□□□□ 0.57
HDDC2-201ENST00000318787 RGS22Q8NE09 1264 aa18.62■□□□□ 0.57
HDDC2-201ENST00000318787 MORC4Q8TE76 937 aa18.62■□□□□ 0.57
HDDC2-201ENST00000318787 NSUN6Q8TEA1 469 aaKnown RBP18.62■□□□□ 0.57
HDDC2-201ENST00000318787 RRP36Q96EU6 259 aaKnown RBP18.62■□□□□ 0.57
HDDC2-201ENST00000318787 MTA3Q9BTC8 594 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms