RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 RABGAP1Q9Y3P9 1069 aa17.63■□□□□ 0.41
PDLIM5-202ENST00000318007 WNT7AO00755 349 aa17.62■□□□□ 0.41
PDLIM5-202ENST00000318007 FDX1P10109 184 aa17.62■□□□□ 0.41
PDLIM5-202ENST00000318007 RPS6P62753 249 aaKnown RBP17.62■□□□□ 0.41
PDLIM5-202ENST00000318007 ANKRD35Q8N283 1001 aa17.62■□□□□ 0.41
PDLIM5-202ENST00000318007 GPRC5AQ8NFJ5 357 aa17.62■□□□□ 0.41
PDLIM5-202ENST00000318007 UIMC1Q96RL1 719 aa17.62■□□□□ 0.41
PDLIM5-202ENST00000318007 COL20A1Q9P218 1284 aa17.62■□□□□ 0.41
PDLIM5-202ENST00000318007 GCOM1H8Y6P7 765 aaPredicted RBP17.62■□□□□ 0.41
PDLIM5-202ENST00000318007 TRPA1O75762 1119 aa17.62■□□□□ 0.41
PDLIM5-202ENST00000318007 POLR2MP0CAP2 368 aa17.62■□□□□ 0.41
PDLIM5-202ENST00000318007 U2AF2P26368 475 aaKnown RBP eCLIP17.62■□□□□ 0.412e-9■■■■■ 29.5
PDLIM5-202ENST00000318007 TM4SF4P48230 202 aa17.62■□□□□ 0.41
PDLIM5-202ENST00000318007 OAZ1P54368 228 aa17.62■□□□□ 0.41
PDLIM5-202ENST00000318007 BAATQ14032 418 aaPredicted RBP17.62■□□□□ 0.41
PDLIM5-202ENST00000318007 RNF207Q6ZRF8 634 aa17.62■□□□□ 0.41
PDLIM5-202ENST00000318007 FOXP1Q9H334 677 aaPredicted RBP17.62■□□□□ 0.41
PDLIM5-202ENST00000318007 ACAD9Q9H845 621 aa17.62■□□□□ 0.41
PDLIM5-202ENST00000318007 ESYT2A0FGR8 921 aa17.61■□□□□ 0.41
PDLIM5-202ENST00000318007 SPDYE3A6NKU9 549 aa17.61■□□□□ 0.41
PDLIM5-202ENST00000318007 M0R2N6 131 aa17.61■□□□□ 0.41
PDLIM5-202ENST00000318007 PGK2P07205 417 aa17.61■□□□□ 0.41
PDLIM5-202ENST00000318007 HSPA6P17066 643 aa17.61■□□□□ 0.41
PDLIM5-202ENST00000318007 RIOX2Q8IUF8 465 aa17.61■□□□□ 0.41
PDLIM5-202ENST00000318007 BICD2Q8TD16 824 aa17.61■□□□□ 0.41
PDLIM5-202ENST00000318007 TNFRSF25Q93038 417 aa17.61■□□□□ 0.41
PDLIM5-202ENST00000318007 A1CFQ9NQ94 594 aaKnown RBP17.61■□□□□ 0.41
PDLIM5-202ENST00000318007 ATP2A1O14983 1001 aa17.6■□□□□ 0.41
PDLIM5-202ENST00000318007 FIBPO43427 364 aa17.6■□□□□ 0.41
PDLIM5-202ENST00000318007 MYSM1Q5VVJ2 828 aa17.6■□□□□ 0.41
PDLIM5-202ENST00000318007 TBCKQ8TEA7 893 aa17.6■□□□□ 0.41
PDLIM5-202ENST00000318007 ZSCAN16Q9H4T2 348 aaPredicted RBP17.6■□□□□ 0.41
PDLIM5-202ENST00000318007 ZFYVE28Q9HCC9 887 aa17.6■□□□□ 0.41
PDLIM5-202ENST00000318007 TSKSQ9UJT2 592 aa17.6■□□□□ 0.41
PDLIM5-202ENST00000318007 CNPY2Q9Y2B0 182 aa17.6■□□□□ 0.41
PDLIM5-202ENST00000318007 TLR2O60603 784 aa17.6■□□□□ 0.41
PDLIM5-202ENST00000318007 GCLCP48506 637 aaPredicted RBP17.6■□□□□ 0.41
PDLIM5-202ENST00000318007 LETM2Q2VYF4 491 aa17.6■□□□□ 0.41
PDLIM5-202ENST00000318007 DAGLBQ8NCG7 672 aa17.6■□□□□ 0.41
PDLIM5-202ENST00000318007 ANO3Q9BYT9 981 aa17.6■□□□□ 0.41
PDLIM5-202ENST00000318007 CLK2P49760 499 aaKnown RBP17.59■□□□□ 0.41
PDLIM5-202ENST00000318007 TRAF1Q13077 416 aa17.59■□□□□ 0.41
PDLIM5-202ENST00000318007 EIF2AK2P19525 551 aaKnown RBP17.59■□□□□ 0.41
PDLIM5-202ENST00000318007 TOB1P50616 345 aaPredicted RBP17.59■□□□□ 0.41
PDLIM5-202ENST00000318007 CNTN2Q02246 1040 aa17.59■□□□□ 0.41
PDLIM5-202ENST00000318007 NONOQ15233 471 aaKnown RBP eCLIP17.59■□□□□ 0.41
PDLIM5-202ENST00000318007 FAM110CQ1W6H9 321 aa17.59■□□□□ 0.41
PDLIM5-202ENST00000318007 GALNT17Q6IS24 598 aa17.59■□□□□ 0.41
PDLIM5-202ENST00000318007 MCF2L2Q86YR7 1114 aa17.59■□□□□ 0.41
PDLIM5-202ENST00000318007 USP28Q96RU2 1077 aa17.59■□□□□ 0.41
PDLIM5-202ENST00000318007 CYP39A1Q9NYL5 469 aa17.59■□□□□ 0.41
PDLIM5-202ENST00000318007 PCDHB6Q9Y5E3 794 aa17.59■□□□□ 0.41
PDLIM5-202ENST00000318007 CLIC4Q9Y696 253 aa17.59■□□□□ 0.41
PDLIM5-202ENST00000318007 MCM7P33993 719 aa17.58■□□□□ 0.4
PDLIM5-202ENST00000318007 BRAPQ7Z569 592 aa17.58■□□□□ 0.4
PDLIM5-202ENST00000318007 SYTL5Q8TDW5 730 aaPredicted RBP17.58■□□□□ 0.4
PDLIM5-202ENST00000318007 TAAR1Q96RJ0 339 aa17.58■□□□□ 0.4
PDLIM5-202ENST00000318007 MRVI1Q9Y6F6 885 aa17.58■□□□□ 0.4
PDLIM5-202ENST00000318007 CA12O43570 354 aa17.57■□□□□ 0.4
PDLIM5-202ENST00000318007 CCNT1O60563 726 aaKnown RBP17.57■□□□□ 0.4
PDLIM5-202ENST00000318007 CCNA1P78396 465 aa17.57■□□□□ 0.4
PDLIM5-202ENST00000318007 ZNF174Q15697 407 aa17.57■□□□□ 0.4
PDLIM5-202ENST00000318007 KRT25Q7Z3Z0 450 aa17.57■□□□□ 0.4
PDLIM5-202ENST00000318007 MMP19Q99542 508 aa17.57■□□□□ 0.4
PDLIM5-202ENST00000318007 RBBP6Q7Z6E9 1792 aaKnown RBP17.57■□□□□ 0.4
PDLIM5-202ENST00000318007 ADGRA2Q96PE1 1338 aa17.57■□□□□ 0.4
PDLIM5-202ENST00000318007 HSD17B4P51659 736 aa17.57■□□□□ 0.4
PDLIM5-202ENST00000318007 C17orf99Q6UX52 265 aa17.57■□□□□ 0.4
PDLIM5-202ENST00000318007 CHST13Q8NET6 341 aa17.57■□□□□ 0.4
PDLIM5-202ENST00000318007 GTF3C2Q8WUA4 911 aaPredicted RBP17.57■□□□□ 0.4
PDLIM5-202ENST00000318007 ARHGAP39Q9C0H5 1083 aa17.57■□□□□ 0.4
PDLIM5-202ENST00000318007 RNF186Q9NXI6 227 aa17.57■□□□□ 0.4
PDLIM5-202ENST00000318007 ATP6V1DQ9Y5K8 247 aa17.57■□□□□ 0.4
PDLIM5-202ENST00000318007 BAG4O95429 457 aaKnown RBP17.56■□□□□ 0.4
PDLIM5-202ENST00000318007 TDP2O95551 362 aa17.56■□□□□ 0.4
PDLIM5-202ENST00000318007 SLC25A27O95847 323 aa17.56■□□□□ 0.4
PDLIM5-202ENST00000318007 BCRP11274 1271 aa17.56■□□□□ 0.4
PDLIM5-202ENST00000318007 PDIA4P13667 645 aaKnown RBP17.56■□□□□ 0.4
PDLIM5-202ENST00000318007 KCTD2Q14681 263 aa17.56■□□□□ 0.4
PDLIM5-202ENST00000318007 SF3A1Q15459 793 aaKnown RBP17.56■□□□□ 0.4
PDLIM5-202ENST00000318007 GPR142Q7Z601 462 aa17.56■□□□□ 0.4
PDLIM5-202ENST00000318007 IL31RAQ8NI17 732 aa17.56■□□□□ 0.4
PDLIM5-202ENST00000318007 RMDN3Q96TC7 470 aa17.56■□□□□ 0.4
PDLIM5-202ENST00000318007 RTEL1Q9NZ71 1219 aa17.56■□□□□ 0.4
PDLIM5-202ENST00000318007 MORF4L1Q9UBU8 362 aa17.56■□□□□ 0.4
PDLIM5-202ENST00000318007 IVNS1ABPQ9Y6Y0 642 aa17.56■□□□□ 0.4
PDLIM5-202ENST00000318007 ZSWIM8A7E2V4 1837 aa17.56■□□□□ 0.4
PDLIM5-202ENST00000318007 TCHHQ07283 1943 aa17.56■□□□□ 0.4
PDLIM5-202ENST00000318007 PIK3CDO00329 1044 aa17.55■□□□□ 0.4
PDLIM5-202ENST00000318007 FCER1AP12319 257 aa17.55■□□□□ 0.4
PDLIM5-202ENST00000318007 MYCLP12524 364 aaPredicted RBP17.55■□□□□ 0.4
PDLIM5-202ENST00000318007 MAP2K2P36507 400 aa17.55■□□□□ 0.4
PDLIM5-202ENST00000318007 ARHGEF16Q5VV41 709 aa17.55■□□□□ 0.4
PDLIM5-202ENST00000318007 GJA10Q969M2 543 aa17.55■□□□□ 0.4
PDLIM5-202ENST00000318007 FBXO40Q9UH90 709 aa17.55■□□□□ 0.4
PDLIM5-202ENST00000318007 NOL7Q9UMY1 257 aaKnown RBP17.55■□□□□ 0.4
PDLIM5-202ENST00000318007 MYH15Q9Y2K3 1946 aa17.55■□□□□ 0.4
PDLIM5-202ENST00000318007 ALDH1A1P00352 501 aa17.55■□□□□ 0.4
PDLIM5-202ENST00000318007 TKFCQ3LXA3 575 aa17.55■□□□□ 0.4
PDLIM5-202ENST00000318007 TTC38Q5R3I4 469 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms