RNA–Protein interactions for RNA: ENST00000317516.11

TPM1-203, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 738 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-203ENST00000317516 CDK7P50613 346 aa20.73■□□□□ 0.91
TPM1-203ENST00000317516 IRX5P78411 483 aaPredicted RBP20.73■□□□□ 0.91
TPM1-203ENST00000317516 PDE4DQ08499 809 aa20.73■□□□□ 0.91
TPM1-203ENST00000317516 FAAP100Q0VG06 881 aa20.73■□□□□ 0.91
TPM1-203ENST00000317516 CDC37Q16543 378 aaPredicted RBP20.73■□□□□ 0.91
TPM1-203ENST00000317516 MCF2L2Q86YR7 1114 aa20.73■□□□□ 0.91
TPM1-203ENST00000317516 SEZ6LQ9BYH1 1024 aa20.73■□□□□ 0.91
TPM1-203ENST00000317516 ABCB11O95342 1321 aa20.73■□□□□ 0.91
TPM1-203ENST00000317516 CTAGE5O15320 804 aa20.72■□□□□ 0.91
TPM1-203ENST00000317516 TLR3O15455 904 aaKnown RBP20.72■□□□□ 0.91
TPM1-203ENST00000317516 SGSM2O43147 1006 aa20.72■□□□□ 0.91
TPM1-203ENST00000317516 BEX3Q00994 111 aa20.72■□□□□ 0.91
TPM1-203ENST00000317516 DUSP28Q4G0W2 176 aa20.72■□□□□ 0.91
TPM1-203ENST00000317516 SLC30A10Q6XR72 485 aa20.72■□□□□ 0.91
TPM1-203ENST00000317516 RALYLQ86SE5 291 aaKnown RBP20.72■□□□□ 0.91
TPM1-203ENST00000317516 DEFB123Q8N688 67 aa20.72■□□□□ 0.91
TPM1-203ENST00000317516 WDR11Q9BZH6 1224 aa20.72■□□□□ 0.91
TPM1-203ENST00000317516 CPVLQ9H3G5 476 aa20.72■□□□□ 0.91
TPM1-203ENST00000317516 VAT1LQ9HCJ6 419 aa20.72■□□□□ 0.91
TPM1-203ENST00000317516 DDX49Q9Y6V7 483 aaKnown RBP20.72■□□□□ 0.91
TPM1-203ENST00000317516 CYP21A2P08686 494 aa20.71■□□□□ 0.91
TPM1-203ENST00000317516 PTH1RQ03431 593 aa20.71■□□□□ 0.91
TPM1-203ENST00000317516 SART3Q15020 963 aaKnown RBP20.71■□□□□ 0.91
TPM1-203ENST00000317516 SHHQ15465 462 aa20.71■□□□□ 0.91
TPM1-203ENST00000317516 FBXO11Q86XK2 927 aa20.71■□□□□ 0.91
TPM1-203ENST00000317516 NCOA7Q8NI08 942 aa20.71■□□□□ 0.91
TPM1-203ENST00000317516 MRPL11Q9Y3B7 192 aaKnown RBP20.71■□□□□ 0.91
TPM1-203ENST00000317516 DNAH12Q6ZR08 3092 aa20.7■□□□□ 0.9
TPM1-203ENST00000317516 IFIT3O14879 490 aaKnown RBP20.7■□□□□ 0.9
TPM1-203ENST00000317516 TIMP1P01033 207 aa20.7■□□□□ 0.9
TPM1-203ENST00000317516 SEC23AQ15436 765 aa20.7■□□□□ 0.9
TPM1-203ENST00000317516 BRDTQ58F21 947 aaPredicted RBP20.7■□□□□ 0.9
TPM1-203ENST00000317516 CXCL17Q6UXB2 119 aa20.7■□□□□ 0.9
TPM1-203ENST00000317516 CYB5R4Q7L1T6 521 aa20.7■□□□□ 0.9
TPM1-203ENST00000317516 RBM47A0AV96 593 aaKnown RBP20.69■□□□□ 0.9
TPM1-203ENST00000317516 KLRF2D3W0D1 207 aa20.69■□□□□ 0.9
TPM1-203ENST00000317516 NKRFO15226 690 aaKnown RBP eCLIP20.69■□□□□ 0.9
TPM1-203ENST00000317516 ITGB8P26012 769 aa20.69■□□□□ 0.9
TPM1-203ENST00000317516 FPGSQ05932 587 aa20.69■□□□□ 0.9
TPM1-203ENST00000317516 TRAF1Q13077 416 aa20.69■□□□□ 0.9
TPM1-203ENST00000317516 QRICH1Q2TAL8 776 aa20.69■□□□□ 0.9
TPM1-203ENST00000317516 SCFD2Q8WU76 684 aa20.69■□□□□ 0.9
TPM1-203ENST00000317516 MAP4K1Q92918 833 aa20.69■□□□□ 0.9
TPM1-203ENST00000317516 JMJD4Q9H9V9 463 aa20.69■□□□□ 0.9
TPM1-203ENST00000317516 E7EWF7 191 aa20.68■□□□□ 0.9
TPM1-203ENST00000317516 EDNRBP24530 442 aa20.68■□□□□ 0.9
TPM1-203ENST00000317516 CPT1AP50416 773 aa20.68■□□□□ 0.9
TPM1-203ENST00000317516 ITGA7Q13683 1181 aa20.68■□□□□ 0.9
TPM1-203ENST00000317516 FAM109BQ6ICB4 259 aaPredicted RBP20.68■□□□□ 0.9
TPM1-203ENST00000317516 NSUN6Q8TEA1 469 aaKnown RBP20.68■□□□□ 0.9
TPM1-203ENST00000317516 AMNQ9BXJ7 453 aa20.68■□□□□ 0.9
TPM1-203ENST00000317516 GPHNQ9NQX3 736 aaPredicted RBP20.68■□□□□ 0.9
TPM1-203ENST00000317516 POLR3EQ9NVU0 708 aa20.68■□□□□ 0.9
TPM1-203ENST00000317516 TBX21Q9UL17 535 aa20.68■□□□□ 0.9
TPM1-203ENST00000317516 WTAPQ15007 396 aa20.67■□□□□ 0.9
TPM1-203ENST00000317516 PPP2R5BQ15173 497 aa20.67■□□□□ 0.9
TPM1-203ENST00000317516 C9orf50Q5SZB4 431 aa20.67■□□□□ 0.9
TPM1-203ENST00000317516 FAM126BQ8IXS8 530 aa20.67■□□□□ 0.9
TPM1-203ENST00000317516 STAG2Q8N3U4 1231 aa20.67■□□□□ 0.9
TPM1-203ENST00000317516 SLC43A3Q8NBI5 491 aa20.67■□□□□ 0.9
TPM1-203ENST00000317516 PALM3A6NDB9 673 aaPredicted RBP20.66■□□□□ 0.9
TPM1-203ENST00000317516 MFSD5Q6N075 450 aa20.66■□□□□ 0.9
TPM1-203ENST00000317516 Q7L0L9 218 aa20.66■□□□□ 0.9
TPM1-203ENST00000317516 TMEM199Q8N511 208 aa20.66■□□□□ 0.9
TPM1-203ENST00000317516 OR6J1Q8NGC5 347 aa20.66■□□□□ 0.9
TPM1-203ENST00000317516 SYTL5Q8TDW5 730 aaPredicted RBP20.66■□□□□ 0.9
TPM1-203ENST00000317516 IWS1Q96ST2 819 aa20.66■□□□□ 0.9
TPM1-203ENST00000317516 MAD2L2Q9UI95 211 aa20.66■□□□□ 0.9
TPM1-203ENST00000317516 LAMA3Q16787 3333 aa20.66■□□□□ 0.9
TPM1-203ENST00000317516 SZT2Q5T011 3432 aa20.66■□□□□ 0.9
TPM1-203ENST00000317516 ZBTB5O15062 677 aa20.65■□□□□ 0.9
TPM1-203ENST00000317516 KPNA6O60684 536 aa20.65■□□□□ 0.9
TPM1-203ENST00000317516 TXNP10599 105 aaKnown RBP20.65■□□□□ 0.9
TPM1-203ENST00000317516 PPIGQ13427 754 aaKnown RBP eCLIP20.65■□□□□ 0.92e-10■■□□□ 11.9
TPM1-203ENST00000317516 TTLL4Q14679 1199 aa20.65■□□□□ 0.9
TPM1-203ENST00000317516 TMEM63BQ5T3F8 832 aa20.65■□□□□ 0.9
TPM1-203ENST00000317516 CATIPQ7Z7H3 387 aa20.65■□□□□ 0.9
TPM1-203ENST00000317516 SAMD3Q8N6K7 520 aa20.65■□□□□ 0.9
TPM1-203ENST00000317516 TBC1D5Q92609 795 aa20.65■□□□□ 0.9
TPM1-203ENST00000317516 RNPC3Q96LT9 517 aaKnown RBP20.65■□□□□ 0.9
TPM1-203ENST00000317516 RMDN3Q96TC7 470 aa20.65■□□□□ 0.9
TPM1-203ENST00000317516 MTMR10Q9NXD2 777 aa20.65■□□□□ 0.9
TPM1-203ENST00000317516 MAP3K20Q9NYL2 800 aaKnown RBP20.65■□□□□ 0.9
TPM1-203ENST00000317516 RBM8AQ9Y5S9 174 aaKnown RBP20.65■□□□□ 0.9
TPM1-203ENST00000317516 CD4P01730 458 aa20.64■□□□□ 0.89
TPM1-203ENST00000317516 PTGS1P23219 599 aa20.64■□□□□ 0.89
TPM1-203ENST00000317516 SMAD3P84022 425 aaKnown RBP20.64■□□□□ 0.89
TPM1-203ENST00000317516 GRM4Q14833 912 aa20.64■□□□□ 0.89
TPM1-203ENST00000317516 STXBP2Q15833 593 aa20.64■□□□□ 0.89
TPM1-203ENST00000317516 TMEM67Q5HYA8 995 aa20.64■□□□□ 0.89
TPM1-203ENST00000317516 ARHGEF16Q5VV41 709 aa20.64■□□□□ 0.89
TPM1-203ENST00000317516 MTMR8Q96EF0 704 aa20.64■□□□□ 0.89
TPM1-203ENST00000317516 TAAR1Q96RJ0 339 aa20.64■□□□□ 0.89
TPM1-203ENST00000317516 PCDHA1Q9Y5I3 950 aa20.64■□□□□ 0.89
TPM1-203ENST00000317516 MCM3APO60318 1980 aa20.64■□□□□ 0.89
TPM1-203ENST00000317516 LAMA4Q16363 1823 aa20.63■□□□□ 0.89
TPM1-203ENST00000317516 CFBP00751 764 aa20.63■□□□□ 0.89
TPM1-203ENST00000317516 ZNF697Q5TEC3 545 aa20.63■□□□□ 0.89
TPM1-203ENST00000317516 CENPQQ7L2Z9 268 aaPredicted RBP20.63■□□□□ 0.89
TPM1-203ENST00000317516 MTA3Q9BTC8 594 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms